Wall clock time and date at job start Tue Mar 31 2020 12:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46786 * 2 1 4 4 C 1.50691 * 109.47304 * 120.00259 * 2 1 3 5 5 H 1.07999 * 119.99884 * 120.00014 * 4 2 1 6 6 C 1.37878 * 120.00042 * 299.99924 * 4 2 1 7 7 N 1.31512 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00115 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47280 * 90.00000 * 8 6 4 10 10 H 1.48500 * 109.47239 * 210.00439 * 8 6 4 11 11 H 1.48504 * 109.46844 * 330.00033 * 8 6 4 12 12 N 1.46500 * 109.47006 * 240.00391 * 2 1 3 13 13 C 1.34779 * 120.00169 * 84.99489 * 12 2 1 14 14 O 1.21282 * 119.99922 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00037 * 180.02562 * 13 12 2 16 16 C 1.53006 * 109.46866 * 180.02562 * 15 13 12 17 17 N 1.46500 * 109.46998 * 179.97438 * 16 15 13 18 18 C 1.35093 * 120.50779 * 269.72964 * 17 16 15 19 19 O 1.21296 * 120.13129 * 1.67609 * 18 17 16 20 20 C 1.50743 * 119.74638 * 181.44038 * 18 17 16 21 21 O 1.43006 * 109.73888 * 329.14621 * 20 18 17 22 22 C 1.35978 * 116.71174 * 46.19739 * 21 20 18 23 23 C 1.38394 * 120.66478 * 147.14246 * 22 21 20 24 24 C 1.38312 * 119.87602 * 180.02562 * 23 22 21 25 25 C 1.38285 * 120.25765 * 359.96838 * 24 23 22 26 26 C 1.38285 * 120.19979 * 0.02562 * 25 24 23 27 27 C 1.38506 * 119.81262 * 0.02599 * 26 25 24 28 28 H 1.09005 * 109.46786 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47204 * 299.99587 * 1 2 3 30 30 H 1.09002 * 109.47355 * 59.99796 * 1 2 3 31 31 H 0.97001 * 120.00093 * 179.97438 * 7 6 4 32 32 H 0.96996 * 119.99986 * 265.00087 * 12 2 1 33 33 H 1.09000 * 109.47247 * 60.00371 * 15 13 12 34 34 H 1.09001 * 109.47358 * 299.99798 * 15 13 12 35 35 H 1.08993 * 109.46955 * 300.00219 * 16 15 13 36 36 H 1.09000 * 109.47050 * 60.00048 * 16 15 13 37 37 H 1.08997 * 109.54694 * 208.96433 * 20 18 17 38 38 H 1.09000 * 109.19994 * 89.11011 * 20 18 17 39 39 H 1.08001 * 120.06474 * 0.09301 * 23 22 21 40 40 H 1.07997 * 119.87349 * 179.97438 * 24 23 22 41 41 H 1.07996 * 119.89913 * 180.02562 * 25 24 23 42 42 H 1.07995 * 120.09662 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8295 2.6034 8 14 2.3227 -1.1196 4.0078 9 1 3.6306 -0.5441 4.4118 10 1 1.3446 -0.9492 5.1122 11 1 2.4882 -2.5655 3.7120 12 7 2.0184 -0.6905 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4115 15 6 2.6487 -0.7286 -3.5878 16 6 2.7008 0.2548 -4.7589 17 7 3.1891 -0.4357 -5.9551 18 6 4.5105 -0.4737 -6.2336 19 8 5.3073 0.0395 -5.4767 20 6 4.9914 -1.1610 -7.4861 21 8 4.1105 -2.2387 -7.8142 22 6 2.7775 -1.9746 -7.7670 23 6 1.9026 -2.6008 -8.6374 24 6 0.5498 -2.3196 -8.5754 25 6 0.0678 -1.4156 -7.6465 26 6 0.9359 -0.7861 -6.7733 27 6 2.2918 -1.0627 -6.8313 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.7082 1.1607 3.4844 32 1 2.2490 -1.6317 -1.1527 33 1 1.9758 -1.5504 -3.8327 34 1 3.6479 -1.1211 -3.3988 35 1 1.7019 0.6477 -4.9480 36 1 3.3739 1.0763 -4.5137 37 1 5.9968 -1.5501 -7.3255 38 1 5.0068 -0.4426 -8.3058 39 1 2.2753 -3.3086 -9.3631 40 1 -0.1329 -2.8080 -9.2550 41 1 -0.9896 -1.2007 -7.6029 42 1 0.5577 -0.0801 -6.0489 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064333080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:28 Heat of formation + Delta-G solvation = -98.008411 kcal Electronic energy + Delta-G solvation = -26244.241363 eV Core-core repulsion = 22381.812674 eV Total energy + Delta-G solvation = -3862.428689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64205 -40.69912 -39.97580 -38.63050 -37.13771 -36.65692 -34.38292 -33.07027 -31.62878 -30.89173 -30.74467 -28.66901 -27.37066 -25.84281 -24.43118 -23.37175 -22.50938 -21.20120 -20.51868 -20.18920 -19.10547 -18.33873 -18.01020 -17.53694 -17.19167 -16.73780 -16.57490 -16.36242 -16.01067 -15.92636 -15.56401 -15.24177 -15.08964 -14.82445 -14.52052 -14.26107 -14.09852 -13.93424 -13.64384 -13.39842 -12.99205 -12.94563 -12.90373 -12.77210 -12.40169 -12.28923 -12.21046 -12.15534 -12.11335 -11.58807 -11.14586 -11.09266 -10.82640 -10.61429 -9.81337 -9.65912 -8.91633 -8.20605 -6.38368 0.05526 0.30232 1.17938 1.31917 1.42820 1.43549 1.54207 1.70489 2.25486 2.33505 2.59099 2.76244 2.89532 3.09732 3.59253 3.68814 3.75930 3.92539 4.00751 4.04032 4.17589 4.23134 4.37237 4.40436 4.54281 4.57833 4.70346 4.73638 4.77410 4.90370 5.00160 5.06483 5.27439 5.31417 5.40293 5.55717 5.56709 5.65279 5.69578 5.84026 5.86406 6.07113 6.28496 6.55857 6.68904 6.87262 7.28121 7.46718 8.85703 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020002 B = 0.002782 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.553664 B =10061.477242 C =10670.400971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.002 1.002 4 C -0.551 4.551 5 H 0.071 0.929 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.260 1.260 12 N -0.704 5.704 13 C 0.506 3.494 14 O -0.596 6.596 15 C -0.136 4.136 16 C 0.131 3.869 17 N -0.550 5.550 18 C 0.475 3.525 19 O -0.547 6.547 20 C 0.060 3.940 21 O -0.308 6.308 22 C 0.061 3.939 23 C -0.108 4.108 24 C -0.103 4.103 25 C -0.108 4.108 26 C -0.135 4.135 27 C 0.075 3.925 28 H 0.041 0.959 29 H 0.067 0.933 30 H 0.015 0.985 31 H 0.266 0.734 32 H 0.405 0.595 33 H 0.118 0.882 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.166 0.834 38 H 0.123 0.877 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -10.013 -26.554 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.016 0.984 4 C -0.589 4.589 5 H 0.090 0.910 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.184 1.184 12 N -0.353 5.353 13 C 0.292 3.708 14 O -0.478 6.478 15 C -0.177 4.177 16 C 0.009 3.991 17 N -0.274 5.274 18 C 0.265 3.735 19 O -0.424 6.424 20 C -0.017 4.017 21 O -0.223 6.223 22 C 0.015 3.985 23 C -0.127 4.127 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.155 4.155 27 C -0.019 4.019 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.240 0.760 33 H 0.136 0.864 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.184 0.816 38 H 0.140 0.860 39 H 0.177 0.823 40 H 0.183 0.817 41 H 0.171 0.829 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.906 -8.937 -26.024 27.531 hybrid contribution 0.414 0.111 1.553 1.611 sum 1.320 -8.827 -24.471 26.048 Atomic orbital electron populations 1.21882 0.97900 0.99572 0.99746 1.18376 0.91414 0.91843 0.81801 0.98428 1.21554 1.32727 1.13649 0.90943 0.91045 1.25801 0.94813 0.95601 1.02317 1.70045 1.36834 1.23893 1.24685 0.85338 0.77779 0.79177 0.78008 1.20491 1.20672 1.18385 1.46304 1.64932 1.14274 1.09757 1.20890 0.77463 0.86995 0.85435 1.90643 1.53239 1.17962 1.85999 1.21818 1.04026 1.00050 0.91836 1.21207 1.01902 0.93957 0.82034 1.45802 1.06266 1.52205 1.23159 1.22388 0.81620 0.79885 0.89573 1.90793 1.54085 1.46838 1.50698 1.23356 0.95380 0.90236 0.92775 1.86216 1.13447 1.36279 1.86319 1.18906 0.83964 0.98582 0.97088 1.20879 0.92663 1.01456 0.97685 1.21419 0.94472 0.97440 0.98774 1.21358 1.00754 0.96135 0.94444 1.20972 0.90498 1.02106 1.01970 1.18372 0.91340 0.98317 0.93849 0.93972 0.91458 0.96580 0.92460 0.76027 0.86426 0.88605 0.87953 0.90695 0.81650 0.85984 0.82315 0.81706 0.82871 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.71 9.26 71.98 0.67 -6.05 16 2 C 0.27 14.20 2.56 44.24 0.11 14.32 16 3 H 0.00 -0.14 7.58 -2.38 -0.02 -0.15 16 4 C -0.55 -29.72 8.73 25.60 0.22 -29.50 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 8 Si 0.97 42.56 29.54 68.60 2.03 44.58 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 12 N -0.70 -29.91 5.07 -446.09 -2.26 -32.17 16 13 C 0.51 20.47 7.79 87.66 0.68 21.15 16 14 O -0.60 -29.11 15.64 -3.04 -0.05 -29.16 16 15 C -0.14 -4.05 6.02 29.85 0.18 -3.87 16 16 C 0.13 3.80 4.49 86.38 0.39 4.19 16 17 N -0.55 -13.70 2.72 -630.30 -1.71 -15.42 16 18 C 0.48 12.03 7.67 87.62 0.67 12.70 16 19 O -0.55 -18.11 16.76 -3.08 -0.05 -18.16 16 20 C 0.06 0.95 7.16 71.25 0.51 1.46 16 21 O -0.31 -5.47 10.45 -93.31 -0.98 -6.45 16 22 C 0.06 1.09 6.44 22.59 0.15 1.23 16 23 C -0.11 -1.34 10.00 22.32 0.22 -1.12 16 24 C -0.10 -1.01 10.04 22.30 0.22 -0.79 16 25 C -0.11 -1.36 10.04 22.29 0.22 -1.14 16 26 C -0.14 -2.44 9.36 22.34 0.21 -2.23 16 27 C 0.07 1.55 6.39 38.14 0.24 1.79 16 28 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.40 14.58 8.54 -92.71 -0.79 13.79 16 33 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.10 2.79 5.92 -2.39 -0.01 2.78 16 36 H 0.07 2.59 7.44 -2.39 -0.02 2.57 16 37 H 0.17 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 41 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.13 2.45 6.12 -2.91 -0.02 2.43 16 Total: -1.00 -74.61 354.83 2.64 -71.97 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.27 Total: 24.22 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: 5.16 Total: 13.41 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -3.73 Total: -100.41 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -1.07 Total: -53.77 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -74.61 2.64 -71.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.041 kcal (2) G-P(sol) polarization free energy of solvation -74.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds