Wall clock time and date at job start Tue Mar 31 2020 12:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46745 * 2 1 4 4 C 1.50699 * 109.46798 * 240.00110 * 2 1 3 5 5 H 1.07997 * 120.00443 * 275.00467 * 4 2 1 6 6 C 1.37879 * 119.99985 * 95.00462 * 4 2 1 7 7 N 1.31519 * 120.00345 * 184.91381 * 6 4 2 8 8 Si 1.86802 * 120.00022 * 4.91222 * 6 4 2 9 9 H 1.48502 * 109.47026 * 84.83335 * 8 6 4 10 10 H 1.48496 * 109.47128 * 204.83698 * 8 6 4 11 11 H 1.48506 * 109.46878 * 324.83373 * 8 6 4 12 12 N 1.46498 * 109.47174 * 120.00374 * 2 1 3 13 13 C 1.34781 * 119.99645 * 274.99792 * 12 2 1 14 14 O 1.21277 * 119.99932 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99452 * 179.97438 * 13 12 2 16 16 C 1.53000 * 109.46783 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47179 * 180.02562 * 16 15 13 18 18 N 1.46507 * 109.47358 * 180.02562 * 17 16 15 19 19 C 1.39457 * 126.25581 * 269.71610 * 18 17 16 20 20 C 1.38613 * 133.35756 * 0.72358 * 19 18 17 21 21 C 1.38138 * 119.81995 * 179.63666 * 20 19 18 22 22 C 1.38396 * 120.18767 * 359.70545 * 21 20 19 23 23 C 1.38123 * 120.31537 * 0.02562 * 22 21 20 24 24 C 1.38614 * 119.91638 * 359.97438 * 23 22 21 25 25 O 1.35553 * 132.99934 * 180.02562 * 24 23 22 26 26 C 1.34230 * 109.18085 * 180.02562 * 25 24 23 27 27 O 1.21596 * 125.27566 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.47002 * 55.03351 * 1 2 3 29 29 H 1.09002 * 109.46938 * 175.03545 * 1 2 3 30 30 H 1.08998 * 109.46806 * 295.03713 * 1 2 3 31 31 H 0.96991 * 120.00432 * 179.97438 * 7 6 4 32 32 H 0.96998 * 120.00402 * 95.00028 * 12 2 1 33 33 H 1.08997 * 109.47056 * 60.00463 * 15 13 12 34 34 H 1.08994 * 109.47625 * 299.99892 * 15 13 12 35 35 H 1.09007 * 109.47110 * 59.99965 * 16 15 13 36 36 H 1.09004 * 109.47587 * 300.00250 * 16 15 13 37 37 H 1.09004 * 109.47437 * 300.00236 * 17 16 15 38 38 H 1.08997 * 109.46938 * 60.00404 * 17 16 15 39 39 H 1.07991 * 120.09160 * 359.36094 * 20 19 18 40 40 H 1.08003 * 119.90171 * 179.72196 * 21 20 19 41 41 H 1.07997 * 119.84695 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.04593 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2292 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6130 -3.4623 8 14 2.3136 1.8791 -2.3174 9 1 3.5992 2.3949 -1.7821 10 1 2.1058 2.3992 -3.6927 11 1 1.1986 2.3275 -1.4449 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6489 -0.7290 3.5876 16 6 2.7012 0.2543 4.7587 17 6 3.2112 -0.4670 6.0079 18 7 3.2607 0.4744 7.1294 19 6 4.3466 1.2718 7.4896 20 6 5.6167 1.4448 6.9620 21 6 6.4901 2.3373 7.5525 22 6 6.0981 3.0624 8.6643 23 6 4.8322 2.8993 9.1922 24 6 3.9488 2.0061 8.6066 25 8 2.6747 1.6433 8.8939 26 6 2.2667 0.7242 8.0047 27 8 1.1705 0.1981 7.9914 28 1 -0.3633 0.5889 -0.8421 29 1 -0.3633 -1.0238 -0.0889 30 1 -0.3633 0.4349 0.9311 31 1 2.9363 -0.1048 -4.2556 32 1 2.2491 -1.6318 1.1525 33 1 3.6480 -1.1214 3.3985 34 1 1.9761 -1.5507 3.8325 35 1 1.7022 0.6473 4.9480 36 1 3.3743 1.0759 4.5136 37 1 2.5384 -1.2887 6.2532 38 1 4.2102 -0.8595 5.8183 39 1 5.9241 0.8801 6.0943 40 1 7.4816 2.4699 7.1452 41 1 6.7853 3.7590 9.1213 42 1 4.5308 3.4677 10.0597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:20 Heat of formation + Delta-G solvation = -64.179416 kcal Electronic energy + Delta-G solvation = -25689.419517 eV Core-core repulsion = 21828.457763 eV Total energy + Delta-G solvation = -3860.961754 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.55737 -39.18390 -38.91482 -37.82892 -36.60934 -34.99946 -33.49194 -32.37419 -31.12863 -30.23135 -29.60585 -27.52760 -25.33752 -23.84291 -23.48692 -23.12439 -21.41383 -20.64222 -19.58229 -18.97174 -18.17175 -17.62582 -17.32913 -16.82419 -16.05484 -15.77033 -15.48278 -15.28674 -15.07539 -14.63621 -14.35558 -14.05004 -13.82719 -13.73398 -13.60421 -13.06025 -12.76012 -12.58465 -12.51715 -12.26209 -12.15860 -11.86566 -11.62781 -11.42670 -11.20481 -11.11980 -10.94532 -10.87654 -10.82597 -10.59800 -9.90851 -9.25614 -9.23181 -9.18889 -8.73313 -8.50624 -8.11738 -6.26677 -4.30450 0.64792 0.73030 1.75640 2.21251 2.52052 3.13373 3.21793 3.26363 3.31518 3.39194 3.88344 3.95677 4.20898 4.29655 4.43472 4.65765 4.74702 4.77976 4.83406 4.89265 4.90763 5.12368 5.13897 5.23691 5.36336 5.46759 5.51465 5.68147 5.77775 5.91255 5.94945 5.95639 6.13778 6.17834 6.32421 6.51038 6.66517 6.86756 6.92038 7.16977 7.35102 7.37604 7.53361 8.10502 8.54347 8.73743 8.95683 9.35536 10.85058 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.002605 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.368671 B =10744.271504 C =11487.088862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.230 3.770 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.261 1.261 12 N -0.704 5.704 13 C 0.499 3.501 14 O -0.560 6.560 15 C -0.139 4.139 16 C -0.122 4.122 17 C 0.130 3.870 18 N -0.543 5.543 19 C 0.075 3.925 20 C -0.099 4.099 21 C -0.098 4.098 22 C -0.111 4.111 23 C -0.080 4.080 24 C 0.031 3.969 25 O -0.239 6.239 26 C 0.635 3.365 27 O -0.484 6.484 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.028 0.972 31 H 0.268 0.732 32 H 0.394 0.606 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.580 2.652 24.563 26.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.128 3.872 3 H 0.067 0.933 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.353 5.353 13 C 0.284 3.716 14 O -0.440 6.440 15 C -0.180 4.180 16 C -0.161 4.161 17 C 0.010 3.990 18 N -0.274 5.274 19 C -0.023 4.023 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.130 4.130 23 C -0.098 4.098 24 C -0.016 4.016 25 O -0.144 6.144 26 C 0.390 3.610 27 O -0.366 6.366 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.227 0.773 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.575 3.213 24.488 26.144 hybrid contribution 0.030 0.366 -0.335 0.497 sum 8.605 3.579 24.153 25.889 Atomic orbital electron populations 1.22218 0.98627 1.00565 0.99246 1.19121 0.90917 0.94319 0.82878 0.93287 1.21013 1.45236 0.95618 0.94988 0.90328 1.24947 0.93620 0.98646 0.95155 1.69879 1.44764 1.36216 1.01685 0.86889 0.79773 0.85834 0.77378 1.19885 1.21147 1.18508 1.46643 1.64829 1.13878 1.09902 1.20460 0.78614 0.87573 0.84905 1.90656 1.51672 1.16333 1.85341 1.21566 1.03379 0.99377 0.93634 1.21710 1.03788 0.98656 0.91947 1.21809 1.03924 0.90155 0.83094 1.45945 1.11919 1.40158 1.29393 1.18613 0.91424 0.95497 0.96787 1.20189 0.89955 1.00701 1.01183 1.21052 0.99723 0.95243 0.95624 1.20958 0.94955 1.00352 0.96752 1.20047 0.91761 0.97101 1.00937 1.19045 0.83873 1.01236 0.97409 1.84997 1.27230 1.52336 1.49874 1.18542 0.84754 0.79443 0.78301 1.91173 1.18991 1.52970 1.73490 0.92946 0.93408 0.95252 0.92214 0.77318 0.88875 0.88883 0.90297 0.90418 0.88238 0.88601 0.84506 0.84256 0.84111 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.47 37.16 0.35 -2.92 16 2 C 0.23 5.44 2.22 -69.08 -0.15 5.29 16 3 H 0.05 1.27 4.73 -51.93 -0.25 1.03 16 4 C -0.53 -14.10 9.05 -34.44 -0.31 -14.41 16 5 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 7 N -0.89 -25.97 13.96 55.43 0.77 -25.19 16 8 Si 0.87 21.51 26.99 -169.99 -4.59 16.92 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.26 -6.37 6.82 56.52 0.39 -5.98 16 12 N -0.70 -13.68 5.07 -54.93 -0.28 -13.96 16 13 C 0.50 9.11 7.79 -10.98 -0.09 9.02 16 14 O -0.56 -12.59 15.64 5.56 0.09 -12.50 16 15 C -0.14 -1.65 5.70 -27.88 -0.16 -1.81 16 16 C -0.12 -1.48 4.83 -26.73 -0.13 -1.61 16 17 C 0.13 1.20 6.04 -4.04 -0.02 1.18 16 18 N -0.54 -6.13 2.81 -119.01 -0.33 -6.46 16 19 C 0.07 0.75 6.84 -83.79 -0.57 0.17 16 20 C -0.10 -0.74 10.04 -39.48 -0.40 -1.14 16 21 C -0.10 -0.55 10.04 -39.56 -0.40 -0.95 16 22 C -0.11 -0.59 10.03 -39.57 -0.40 -0.99 16 23 C -0.08 -0.57 10.06 -39.48 -0.40 -0.96 16 24 C 0.03 0.32 7.35 -38.99 -0.29 0.03 16 25 O -0.24 -3.06 10.72 -21.97 -0.24 -3.29 16 26 C 0.63 8.82 9.07 54.06 0.49 9.31 16 27 O -0.48 -8.08 17.81 -19.00 -0.34 -8.42 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.39 6.58 8.59 -40.82 -0.35 6.22 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.10 0.87 8.06 -51.93 -0.42 0.46 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.14 0.45 8.06 -52.48 -0.42 0.02 16 41 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 42 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -35.07 363.05 -7.67 -42.74 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.66 Total: 2.34 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.57 Total: 2.36 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.16 Total: -45.61 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.49 Total: -24.21 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.59 Total: 16.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.07 -7.67 -42.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.444 kcal (2) G-P(sol) polarization free energy of solvation -35.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds