Wall clock time and date at job start Tue Mar 31 2020 12:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46745 * 2 1 4 4 C 1.50699 * 109.46798 * 240.00110 * 2 1 3 5 5 H 1.07997 * 120.00443 * 275.00467 * 4 2 1 6 6 C 1.37879 * 119.99985 * 95.00462 * 4 2 1 7 7 N 1.31519 * 120.00345 * 184.91381 * 6 4 2 8 8 Si 1.86802 * 120.00022 * 4.91222 * 6 4 2 9 9 H 1.48502 * 109.47026 * 84.83335 * 8 6 4 10 10 H 1.48496 * 109.47128 * 204.83698 * 8 6 4 11 11 H 1.48506 * 109.46878 * 324.83373 * 8 6 4 12 12 N 1.46498 * 109.47174 * 120.00374 * 2 1 3 13 13 C 1.34781 * 119.99645 * 274.99792 * 12 2 1 14 14 O 1.21277 * 119.99932 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99452 * 179.97438 * 13 12 2 16 16 C 1.53000 * 109.46783 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.47179 * 180.02562 * 16 15 13 18 18 N 1.46507 * 109.47358 * 180.02562 * 17 16 15 19 19 C 1.39457 * 126.25581 * 269.71610 * 18 17 16 20 20 C 1.38613 * 133.35756 * 0.72358 * 19 18 17 21 21 C 1.38138 * 119.81995 * 179.63666 * 20 19 18 22 22 C 1.38396 * 120.18767 * 359.70545 * 21 20 19 23 23 C 1.38123 * 120.31537 * 0.02562 * 22 21 20 24 24 C 1.38614 * 119.91638 * 359.97438 * 23 22 21 25 25 O 1.35553 * 132.99934 * 180.02562 * 24 23 22 26 26 C 1.34230 * 109.18085 * 180.02562 * 25 24 23 27 27 O 1.21596 * 125.27566 * 179.97438 * 26 25 24 28 28 H 1.08996 * 109.47002 * 55.03351 * 1 2 3 29 29 H 1.09002 * 109.46938 * 175.03545 * 1 2 3 30 30 H 1.08998 * 109.46806 * 295.03713 * 1 2 3 31 31 H 0.96991 * 120.00432 * 179.97438 * 7 6 4 32 32 H 0.96998 * 120.00402 * 95.00028 * 12 2 1 33 33 H 1.08997 * 109.47056 * 60.00463 * 15 13 12 34 34 H 1.08994 * 109.47625 * 299.99892 * 15 13 12 35 35 H 1.09007 * 109.47110 * 59.99965 * 16 15 13 36 36 H 1.09004 * 109.47587 * 300.00250 * 16 15 13 37 37 H 1.09004 * 109.47437 * 300.00236 * 17 16 15 38 38 H 1.08997 * 109.46938 * 60.00404 * 17 16 15 39 39 H 1.07991 * 120.09160 * 359.36094 * 20 19 18 40 40 H 1.08003 * 119.90171 * 179.72196 * 21 20 19 41 41 H 1.07997 * 119.84695 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.04593 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2292 6 6 2.3603 0.0122 -2.3581 7 7 2.7059 -0.6130 -3.4623 8 14 2.3136 1.8791 -2.3174 9 1 3.5992 2.3949 -1.7821 10 1 2.1058 2.3992 -3.6927 11 1 1.1986 2.3275 -1.4449 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8583 1.1583 2.4117 15 6 2.6489 -0.7290 3.5876 16 6 2.7012 0.2543 4.7587 17 6 3.2112 -0.4670 6.0079 18 7 3.2607 0.4744 7.1294 19 6 4.3466 1.2718 7.4896 20 6 5.6167 1.4448 6.9620 21 6 6.4901 2.3373 7.5525 22 6 6.0981 3.0624 8.6643 23 6 4.8322 2.8993 9.1922 24 6 3.9488 2.0061 8.6066 25 8 2.6747 1.6433 8.8939 26 6 2.2667 0.7242 8.0047 27 8 1.1705 0.1981 7.9914 28 1 -0.3633 0.5889 -0.8421 29 1 -0.3633 -1.0238 -0.0889 30 1 -0.3633 0.4349 0.9311 31 1 2.9363 -0.1048 -4.2556 32 1 2.2491 -1.6318 1.1525 33 1 3.6480 -1.1214 3.3985 34 1 1.9761 -1.5507 3.8325 35 1 1.7022 0.6473 4.9480 36 1 3.3743 1.0759 4.5136 37 1 2.5384 -1.2887 6.2532 38 1 4.2102 -0.8595 5.8183 39 1 5.9241 0.8801 6.0943 40 1 7.4816 2.4699 7.1452 41 1 6.7853 3.7590 9.1213 42 1 4.5308 3.4677 10.0597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064333329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:19 Heat of formation + Delta-G solvation = -87.684601 kcal Electronic energy + Delta-G solvation = -25690.438778 eV Core-core repulsion = 21828.457763 eV Total energy + Delta-G solvation = -3861.981015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -44.36598 -40.67642 -39.69468 -38.69121 -37.50553 -36.73134 -34.54101 -34.34419 -31.81545 -31.62189 -30.45583 -28.51272 -27.34757 -24.72891 -24.39311 -23.81679 -22.55207 -21.93687 -21.19644 -19.64389 -19.33980 -18.77000 -18.51980 -17.69415 -17.59830 -17.24700 -16.71262 -16.34657 -15.78736 -15.71102 -15.36358 -14.99580 -14.92164 -14.85579 -14.64615 -14.50992 -14.42610 -14.16004 -13.43442 -13.30237 -13.18636 -12.99585 -12.92376 -12.82529 -12.74299 -12.45659 -12.29208 -12.07721 -11.90069 -11.81381 -11.66859 -11.24922 -10.88061 -10.71724 -9.81392 -9.80093 -9.21955 -8.40343 -6.46178 0.07808 0.14246 0.93298 1.25317 1.27243 1.32031 1.42741 1.78632 1.81569 2.25445 2.49743 2.61463 3.02477 3.30194 3.49226 3.75788 3.81993 3.99647 4.03613 4.20427 4.26511 4.28941 4.39244 4.42334 4.49368 4.50913 4.66361 4.72539 4.79841 4.81413 4.94775 5.04657 5.09122 5.15465 5.25860 5.34275 5.35695 5.43222 5.44640 5.62455 5.76193 6.09845 6.12212 6.43609 6.59236 6.93325 7.20377 7.51033 8.74605 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019077 B = 0.002605 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.368671 B =10744.271504 C =11487.088862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.232 3.768 3 H 0.028 0.972 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.034 3.966 7 N -0.929 5.929 8 Si 0.925 3.075 9 H -0.272 1.272 10 H -0.277 1.277 11 H -0.262 1.262 12 N -0.704 5.704 13 C 0.494 3.506 14 O -0.606 6.606 15 C -0.124 4.124 16 C -0.114 4.114 17 C 0.131 3.869 18 N -0.538 5.538 19 C 0.051 3.949 20 C -0.103 4.103 21 C -0.091 4.091 22 C -0.099 4.099 23 C -0.084 4.084 24 C -0.005 4.005 25 O -0.254 6.254 26 C 0.623 3.377 27 O -0.529 6.529 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.033 0.967 31 H 0.271 0.729 32 H 0.408 0.592 33 H 0.133 0.867 34 H 0.122 0.878 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.172 0.828 41 H 0.177 0.823 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.211 2.923 25.886 28.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.128 3.872 3 H 0.045 0.955 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.167 4.167 7 N -0.568 5.568 8 Si 0.751 3.249 9 H -0.197 1.197 10 H -0.203 1.203 11 H -0.186 1.186 12 N -0.353 5.353 13 C 0.282 3.718 14 O -0.489 6.489 15 C -0.164 4.164 16 C -0.153 4.153 17 C 0.013 3.987 18 N -0.269 5.269 19 C -0.046 4.046 20 C -0.123 4.123 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.102 4.102 24 C -0.051 4.051 25 O -0.160 6.160 26 C 0.379 3.621 27 O -0.416 6.416 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.244 0.756 33 H 0.151 0.849 34 H 0.140 0.860 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.190 0.810 41 H 0.194 0.806 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.257 3.476 25.831 28.391 hybrid contribution -0.662 0.335 -0.672 1.001 sum 10.596 3.811 25.159 27.564 Atomic orbital electron populations 1.22123 0.97548 1.01227 0.99180 1.18845 0.91702 0.93141 0.83507 0.95453 1.21187 1.44169 0.94886 0.96031 0.92221 1.25584 0.93853 1.02189 0.95042 1.69969 1.46691 1.37676 1.02426 0.86079 0.79601 0.81695 0.77569 1.19723 1.20265 1.18645 1.46385 1.65109 1.14562 1.09285 1.21501 0.77245 0.87140 0.85905 1.90640 1.53440 1.18692 1.86113 1.21562 1.05864 0.99101 0.89833 1.21578 1.01531 0.98689 0.93461 1.21947 1.06224 0.89419 0.81155 1.45958 1.11722 1.40260 1.28949 1.18942 0.92102 0.96076 0.97453 1.20566 0.88941 1.01140 1.01673 1.21541 1.00613 0.93712 0.95032 1.21453 0.94332 0.99880 0.96102 1.20471 0.91983 0.96368 1.01395 1.19624 0.83319 1.03188 0.98943 1.84909 1.28960 1.52195 1.49941 1.18720 0.84841 0.79613 0.78919 1.91109 1.20739 1.54827 1.74927 0.93628 0.92243 0.94815 0.91991 0.75584 0.84903 0.86004 0.93976 0.91677 0.87657 0.84570 0.82708 0.81019 0.80590 0.82587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.19 9.47 71.98 0.68 -5.51 16 2 C 0.23 10.87 2.22 44.25 0.10 10.97 16 3 H 0.03 1.42 4.73 -2.39 -0.01 1.41 16 4 C -0.52 -27.85 9.05 25.60 0.23 -27.62 16 5 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 6 C 0.03 1.88 5.47 84.65 0.46 2.35 16 7 N -0.93 -54.65 13.96 21.45 0.30 -54.35 16 8 Si 0.93 44.43 26.99 68.60 1.85 46.28 16 9 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.26 -12.52 6.82 99.48 0.68 -11.84 16 12 N -0.70 -26.40 5.07 -446.10 -2.26 -28.66 16 13 C 0.49 17.36 7.79 87.66 0.68 18.04 16 14 O -0.61 -27.23 15.64 -3.02 -0.05 -27.28 16 15 C -0.12 -2.59 5.70 29.85 0.17 -2.42 16 16 C -0.11 -2.62 4.83 30.59 0.15 -2.47 16 17 C 0.13 2.19 6.04 86.38 0.52 2.71 16 18 N -0.54 -11.99 2.81 -761.02 -2.14 -14.13 16 19 C 0.05 0.96 6.84 38.31 0.26 1.23 16 20 C -0.10 -1.22 10.04 22.34 0.22 -1.00 16 21 C -0.09 -0.65 10.04 22.28 0.22 -0.43 16 22 C -0.10 -0.68 10.03 22.28 0.22 -0.46 16 23 C -0.08 -1.04 10.06 22.33 0.22 -0.81 16 24 C -0.01 -0.10 7.35 22.66 0.17 0.06 16 25 O -0.25 -6.88 10.72 8.58 0.09 -6.79 16 26 C 0.62 18.23 9.07 129.79 1.18 19.41 16 27 O -0.53 -18.85 17.81 19.20 0.34 -18.50 16 28 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 32 H 0.41 12.85 8.59 -92.71 -0.80 12.05 16 33 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.28 8.10 -2.38 -0.02 1.26 16 36 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 37 H 0.11 1.67 8.06 -2.39 -0.02 1.65 16 38 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.16 1.21 8.06 -2.92 -0.02 1.18 16 40 H 0.17 0.16 8.06 -2.91 -0.02 0.13 16 41 H 0.18 -0.01 8.06 -2.91 -0.02 -0.04 16 42 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -80.61 363.05 3.86 -76.75 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.22 Total: 12.63 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 5.50 Total: 14.04 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -4.10 Total: -97.14 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: 0.39 Total: -52.57 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.85 Total: 46.28 kcal Total: -80.61 3.86 -76.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.937 kcal (2) G-P(sol) polarization free energy of solvation -80.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds