Wall clock time and date at job start Tue Mar 31 2020 13:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46855 * 2 1 4 4 C 1.37095 * 119.99902 * 264.76253 * 3 2 1 5 5 H 1.08007 * 119.99846 * 138.85787 * 4 3 2 6 6 C 1.38946 * 120.00301 * 318.85660 * 4 3 2 7 7 N 1.31421 * 119.99982 * 341.82562 * 6 4 3 8 8 Si 1.86797 * 120.00089 * 161.82394 * 6 4 3 9 9 H 1.48502 * 109.47147 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47195 * 120.00044 * 8 6 4 11 11 H 1.48507 * 109.47020 * 239.99977 * 8 6 4 12 12 C 1.34782 * 120.00048 * 84.77042 * 3 2 1 13 13 O 1.21293 * 119.99916 * 179.97438 * 12 3 2 14 14 C 1.50696 * 119.99841 * 359.97438 * 12 3 2 15 15 C 1.53004 * 109.46972 * 180.02562 * 14 12 3 16 16 C 1.52997 * 109.46923 * 180.02562 * 15 14 12 17 17 N 1.46503 * 109.47087 * 180.02562 * 16 15 14 18 18 C 1.39470 * 126.25083 * 270.16952 * 17 16 15 19 19 C 1.38598 * 133.36765 * 359.96482 * 18 17 16 20 20 C 1.38129 * 119.83158 * 180.37673 * 19 18 17 21 21 C 1.38413 * 120.18257 * 359.95620 * 20 19 18 22 22 C 1.38126 * 120.30887 * 0.04363 * 21 20 19 23 23 C 1.38607 * 119.91991 * 359.97274 * 22 21 20 24 24 O 1.35560 * 132.99757 * 179.97438 * 23 22 21 25 25 C 1.34234 * 109.17880 * 180.02562 * 24 23 22 26 26 O 1.21595 * 125.27567 * 180.02562 * 25 24 23 27 27 H 1.09000 * 109.47543 * 300.00086 * 1 2 3 28 28 H 1.09004 * 109.46573 * 60.00638 * 1 2 3 29 29 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47543 * 239.99914 * 2 1 3 31 31 H 1.09007 * 109.47059 * 119.99503 * 2 1 3 32 32 H 0.96997 * 119.99974 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.47405 * 60.00299 * 14 12 3 34 34 H 1.09002 * 109.47688 * 300.00060 * 14 12 3 35 35 H 1.08996 * 109.46914 * 60.00253 * 15 14 12 36 36 H 1.09000 * 109.46820 * 299.99790 * 15 14 12 37 37 H 1.08995 * 109.47913 * 60.00114 * 16 15 14 38 38 H 1.09002 * 109.47631 * 299.99618 * 16 15 14 39 39 H 1.08007 * 120.08492 * 0.37315 * 19 18 17 40 40 H 1.07996 * 119.91658 * 179.97438 * 20 19 18 41 41 H 1.07997 * 119.85038 * 180.02562 * 21 20 19 42 42 H 1.08007 * 120.04073 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3489 1.9914 -1.1823 5 1 2.0744 3.0219 -1.3535 6 6 3.0372 1.2842 -2.1604 7 7 3.6793 0.1817 -1.8449 8 14 3.0500 1.9004 -3.9238 9 1 2.2585 3.1535 -4.0160 10 1 4.4489 2.1669 -4.3449 11 1 2.4532 0.8708 -4.8122 12 6 2.1426 2.0521 1.1624 13 8 2.5473 3.1955 1.1624 14 6 1.7788 1.3815 2.4619 15 6 2.0097 2.3544 3.6200 16 6 1.6409 1.6734 4.9395 17 7 1.8615 2.6052 6.0483 18 6 3.0429 2.7595 6.7733 19 6 4.2866 2.1515 6.7068 20 6 5.2814 2.5235 7.5900 21 6 5.0392 3.5013 8.5392 22 6 3.8022 4.1116 8.6114 23 6 2.7978 3.7447 7.7296 24 8 1.5167 4.1561 7.5645 25 6 0.9607 3.4719 6.5523 26 8 -0.1802 3.6092 6.1548 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 4.1595 -0.3122 -2.5278 33 1 2.4002 0.4968 2.6008 34 1 0.7292 1.0882 2.4382 35 1 1.3880 3.2388 3.4810 36 1 3.0591 2.6481 3.6440 37 1 2.2629 0.7892 5.0784 38 1 0.5916 1.3794 4.9158 39 1 4.4775 1.3887 5.9663 40 1 6.2509 2.0503 7.5397 41 1 5.8210 3.7883 9.2269 42 1 3.6181 4.8744 9.3536 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067687858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:16 Heat of formation + Delta-G solvation = -51.362255 kcal Electronic energy + Delta-G solvation = -26212.469262 eV Core-core repulsion = 22352.063302 eV Total energy + Delta-G solvation = -3860.405960 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.39916 -38.80118 -38.68559 -37.64586 -36.41371 -35.02732 -33.19992 -31.96783 -30.97589 -29.70569 -29.43553 -27.65841 -24.98441 -23.67013 -22.98163 -22.95326 -22.11055 -21.04612 -18.85424 -18.76611 -17.86883 -17.45638 -16.77036 -16.66522 -15.89225 -15.44455 -15.32235 -14.94840 -14.74130 -14.44393 -14.20592 -14.06946 -13.63194 -13.48955 -13.34586 -12.91714 -12.75942 -12.60320 -12.17296 -12.02595 -11.82677 -11.60072 -11.39607 -11.34002 -11.06855 -11.00322 -10.92063 -10.73107 -10.63180 -10.34027 -10.27585 -10.08120 -9.10851 -8.93567 -8.42672 -8.32974 -7.42741 -6.33104 -4.01180 0.78831 0.87156 1.93244 2.37769 2.68027 3.15395 3.25751 3.27334 3.32380 3.92096 4.06549 4.15326 4.40677 4.55950 4.70844 4.82674 4.88630 4.99606 5.02972 5.08455 5.18813 5.23543 5.41663 5.56189 5.62689 5.69939 5.79946 5.83329 5.93069 6.05080 6.06004 6.11859 6.18052 6.27994 6.29681 6.42097 6.50849 6.54307 6.86173 7.02758 7.19874 7.54196 7.58070 8.30180 8.51710 9.20020 9.39990 10.02240 10.72152 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002832 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.893728 B = 9883.345654 C =10465.065952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 N -0.443 5.443 4 C -0.308 4.308 5 H 0.087 0.913 6 C 0.038 3.962 7 N -0.873 5.873 8 Si 0.917 3.083 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.462 3.538 13 O -0.581 6.581 14 C -0.132 4.132 15 C -0.118 4.118 16 C 0.129 3.871 17 N -0.541 5.541 18 C 0.077 3.923 19 C -0.099 4.099 20 C -0.098 4.098 21 C -0.113 4.113 22 C -0.080 4.080 23 C 0.030 3.970 24 O -0.240 6.240 25 C 0.634 3.366 26 O -0.484 6.484 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.266 0.734 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.954 -2.156 19.222 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.162 5.162 4 C -0.436 4.436 5 H 0.105 0.895 6 C -0.166 4.166 7 N -0.511 5.511 8 Si 0.743 3.257 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.250 3.750 13 O -0.464 6.464 14 C -0.173 4.173 15 C -0.157 4.157 16 C 0.010 3.990 17 N -0.272 5.272 18 C -0.021 4.021 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.132 4.132 22 C -0.099 4.099 23 C -0.017 4.017 24 O -0.145 6.145 25 C 0.389 3.611 26 O -0.367 6.367 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.402 -1.526 18.930 19.043 hybrid contribution -0.032 -0.001 -1.070 1.070 sum 1.371 -1.527 17.861 17.978 Atomic orbital electron populations 1.22234 0.98240 1.00351 1.01611 1.21450 0.91583 0.85646 1.03395 1.43464 1.56157 1.11741 1.04874 1.19423 1.34647 0.98524 0.90985 0.89498 1.25414 0.94070 0.96563 1.00553 1.69932 1.29681 1.17620 1.33853 0.86025 0.78137 0.79044 0.82448 1.19197 1.20753 1.20622 1.20277 0.81959 0.87893 0.84855 1.90528 1.50167 1.18834 1.86906 1.21549 1.02622 0.99060 0.94053 1.21679 1.03566 0.99322 0.91128 1.21872 1.03861 0.90057 0.83240 1.46011 1.10344 1.37779 1.33105 1.18623 0.89866 0.99267 0.94349 1.20205 0.89401 1.01263 1.01123 1.21037 0.98908 0.97279 0.94449 1.20939 0.95766 0.96918 0.99568 1.20021 0.90246 1.01449 0.98202 1.19047 0.84339 0.98174 1.00122 1.84988 1.23923 1.57231 1.48404 1.18540 0.85221 0.78617 0.78716 1.91166 1.14318 1.68896 1.62320 0.93801 0.92428 0.93098 0.87924 0.93369 0.92376 0.89895 0.90058 0.90632 0.90683 0.88753 0.88403 0.84459 0.84318 0.84201 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 10.15 37.16 0.38 -2.52 16 2 C 0.10 2.17 5.41 -4.04 -0.02 2.15 16 3 N -0.44 -11.07 2.50 -114.81 -0.29 -11.36 16 4 C -0.31 -8.54 8.84 -14.94 -0.13 -8.68 16 5 H 0.09 2.55 7.82 -52.48 -0.41 2.14 16 6 C 0.04 1.01 4.95 -17.47 -0.09 0.92 16 7 N -0.87 -23.36 11.61 55.50 0.64 -22.72 16 8 Si 0.92 20.65 29.59 -169.99 -5.03 15.62 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 12 C 0.46 11.12 7.59 -10.99 -0.08 11.04 16 13 O -0.58 -16.28 15.89 5.55 0.09 -16.19 16 14 C -0.13 -2.27 4.31 -27.88 -0.12 -2.39 16 15 C -0.12 -1.89 4.83 -26.73 -0.13 -2.02 16 16 C 0.13 1.58 6.04 -4.04 -0.02 1.56 16 17 N -0.54 -7.33 2.81 -119.01 -0.33 -7.66 16 18 C 0.08 0.92 6.84 -83.79 -0.57 0.34 16 19 C -0.10 -0.92 10.03 -39.49 -0.40 -1.32 16 20 C -0.10 -0.70 10.04 -39.56 -0.40 -1.10 16 21 C -0.11 -0.75 10.03 -39.56 -0.40 -1.14 16 22 C -0.08 -0.68 10.06 -39.49 -0.40 -1.07 16 23 C 0.03 0.35 7.35 -38.99 -0.29 0.07 16 24 O -0.24 -3.44 10.72 -22.00 -0.24 -3.67 16 25 C 0.63 10.01 9.07 54.06 0.49 10.50 16 26 O -0.48 -8.99 17.81 -19.00 -0.34 -9.33 16 27 H 0.04 0.71 6.60 -51.93 -0.34 0.37 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 2.40 5.76 -51.93 -0.30 2.10 16 31 H 0.05 0.90 6.66 -51.93 -0.35 0.55 16 32 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.08 1.26 7.41 -51.93 -0.38 0.88 16 34 H 0.08 1.25 6.54 -51.93 -0.34 0.91 16 35 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 36 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.15 8.06 -51.93 -0.42 0.73 16 39 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 41 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 357.80 15.07 5.39 5.39 Total: -1.00 -34.40 357.80 -7.75 -42.15 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.48 Total: 1.44 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -2.18 Total: 6.33 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.02 Total: -41.74 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.49 Total: -29.20 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.40 -7.75 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.207 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds