Wall clock time and date at job start Tue Mar 31 2020 13:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46855 * 2 1 4 4 C 1.37095 * 119.99902 * 264.76253 * 3 2 1 5 5 H 1.08007 * 119.99846 * 138.85787 * 4 3 2 6 6 C 1.38946 * 120.00301 * 318.85660 * 4 3 2 7 7 N 1.31421 * 119.99982 * 341.82562 * 6 4 3 8 8 Si 1.86797 * 120.00089 * 161.82394 * 6 4 3 9 9 H 1.48502 * 109.47147 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47195 * 120.00044 * 8 6 4 11 11 H 1.48507 * 109.47020 * 239.99977 * 8 6 4 12 12 C 1.34782 * 120.00048 * 84.77042 * 3 2 1 13 13 O 1.21293 * 119.99916 * 179.97438 * 12 3 2 14 14 C 1.50696 * 119.99841 * 359.97438 * 12 3 2 15 15 C 1.53004 * 109.46972 * 180.02562 * 14 12 3 16 16 C 1.52997 * 109.46923 * 180.02562 * 15 14 12 17 17 N 1.46503 * 109.47087 * 180.02562 * 16 15 14 18 18 C 1.39470 * 126.25083 * 270.16952 * 17 16 15 19 19 C 1.38598 * 133.36765 * 359.96482 * 18 17 16 20 20 C 1.38129 * 119.83158 * 180.37673 * 19 18 17 21 21 C 1.38413 * 120.18257 * 359.95620 * 20 19 18 22 22 C 1.38126 * 120.30887 * 0.04363 * 21 20 19 23 23 C 1.38607 * 119.91991 * 359.97274 * 22 21 20 24 24 O 1.35560 * 132.99757 * 179.97438 * 23 22 21 25 25 C 1.34234 * 109.17880 * 180.02562 * 24 23 22 26 26 O 1.21595 * 125.27567 * 180.02562 * 25 24 23 27 27 H 1.09000 * 109.47543 * 300.00086 * 1 2 3 28 28 H 1.09004 * 109.46573 * 60.00638 * 1 2 3 29 29 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47543 * 239.99914 * 2 1 3 31 31 H 1.09007 * 109.47059 * 119.99503 * 2 1 3 32 32 H 0.96997 * 119.99974 * 179.97438 * 7 6 4 33 33 H 1.09006 * 109.47405 * 60.00299 * 14 12 3 34 34 H 1.09002 * 109.47688 * 300.00060 * 14 12 3 35 35 H 1.08996 * 109.46914 * 60.00253 * 15 14 12 36 36 H 1.09000 * 109.46820 * 299.99790 * 15 14 12 37 37 H 1.08995 * 109.47913 * 60.00114 * 16 15 14 38 38 H 1.09002 * 109.47631 * 299.99618 * 16 15 14 39 39 H 1.08007 * 120.08492 * 0.37315 * 19 18 17 40 40 H 1.07996 * 119.91658 * 179.97438 * 20 19 18 41 41 H 1.07997 * 119.85038 * 180.02562 * 21 20 19 42 42 H 1.08007 * 120.04073 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3489 1.9914 -1.1823 5 1 2.0744 3.0219 -1.3535 6 6 3.0372 1.2842 -2.1604 7 7 3.6793 0.1817 -1.8449 8 14 3.0500 1.9004 -3.9238 9 1 2.2585 3.1535 -4.0160 10 1 4.4489 2.1669 -4.3449 11 1 2.4532 0.8708 -4.8122 12 6 2.1426 2.0521 1.1624 13 8 2.5473 3.1955 1.1624 14 6 1.7788 1.3815 2.4619 15 6 2.0097 2.3544 3.6200 16 6 1.6409 1.6734 4.9395 17 7 1.8615 2.6052 6.0483 18 6 3.0429 2.7595 6.7733 19 6 4.2866 2.1515 6.7068 20 6 5.2814 2.5235 7.5900 21 6 5.0392 3.5013 8.5392 22 6 3.8022 4.1116 8.6114 23 6 2.7978 3.7447 7.7296 24 8 1.5167 4.1561 7.5645 25 6 0.9607 3.4719 6.5523 26 8 -0.1802 3.6092 6.1548 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 4.1595 -0.3122 -2.5278 33 1 2.4002 0.4968 2.6008 34 1 0.7292 1.0882 2.4382 35 1 1.3880 3.2388 3.4810 36 1 3.0591 2.6481 3.6440 37 1 2.2629 0.7892 5.0784 38 1 0.5916 1.3794 4.9158 39 1 4.4775 1.3887 5.9663 40 1 6.2509 2.0503 7.5397 41 1 5.8210 3.7883 9.2269 42 1 3.6181 4.8744 9.3536 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067687858.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:15 Heat of formation + Delta-G solvation = -72.197243 kcal Electronic energy + Delta-G solvation = -26213.372735 eV Core-core repulsion = 22352.063302 eV Total energy + Delta-G solvation = -3861.309433 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.36055 -40.52186 -39.68813 -38.67872 -37.50501 -36.87783 -34.59751 -33.82295 -31.66667 -31.13730 -30.55915 -28.94694 -26.77809 -24.57655 -24.30897 -23.82140 -23.63273 -22.09543 -20.54793 -19.62855 -18.88660 -18.66480 -18.50640 -17.69377 -17.62493 -17.02417 -16.59086 -16.25150 -15.82138 -15.71376 -15.37553 -14.95548 -14.86286 -14.74167 -14.52286 -14.46766 -14.29389 -13.61855 -13.57718 -13.28499 -13.07486 -12.96781 -12.91168 -12.76914 -12.57371 -12.37314 -12.21703 -12.11131 -12.04220 -11.90140 -11.67603 -11.63521 -10.88704 -10.35866 -9.80801 -9.39201 -9.21426 -8.34845 -6.10940 0.08493 0.15057 0.92910 1.25858 1.34815 1.39650 1.52734 1.79624 2.07797 2.29270 2.61815 3.00466 3.06579 3.31314 3.49042 3.80047 3.85733 4.01024 4.05294 4.20643 4.26747 4.31027 4.32429 4.39951 4.45812 4.48727 4.63784 4.68653 4.80251 4.85509 4.97868 5.04847 5.09447 5.17699 5.25796 5.32751 5.35038 5.44919 5.45561 5.57358 5.63507 6.10419 6.24072 6.43465 6.56515 7.19860 7.48532 8.09503 8.68747 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002832 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.893728 B = 9883.345654 C =10465.065952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.101 3.899 3 N -0.456 5.456 4 C -0.344 4.344 5 H 0.054 0.946 6 C 0.007 3.993 7 N -0.888 5.888 8 Si 0.977 3.023 9 H -0.275 1.275 10 H -0.278 1.278 11 H -0.262 1.262 12 C 0.444 3.556 13 O -0.636 6.636 14 C -0.116 4.116 15 C -0.106 4.106 16 C 0.135 3.865 17 N -0.539 5.539 18 C 0.050 3.950 19 C -0.106 4.106 20 C -0.089 4.089 21 C -0.098 4.098 22 C -0.082 4.082 23 C -0.004 4.004 24 O -0.252 6.252 25 C 0.624 3.376 26 O -0.529 6.529 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.273 0.727 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.037 0.963 36 H 0.058 0.942 37 H 0.134 0.866 38 H 0.105 0.895 39 H 0.150 0.850 40 H 0.173 0.827 41 H 0.180 0.820 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.685 -4.333 20.651 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.022 4.022 3 N -0.175 5.175 4 C -0.472 4.472 5 H 0.072 0.928 6 C -0.196 4.196 7 N -0.525 5.525 8 Si 0.801 3.199 9 H -0.200 1.200 10 H -0.203 1.203 11 H -0.186 1.186 12 C 0.234 3.766 13 O -0.523 6.523 14 C -0.156 4.156 15 C -0.145 4.145 16 C 0.016 3.984 17 N -0.269 5.269 18 C -0.047 4.047 19 C -0.126 4.126 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.100 4.100 23 C -0.050 4.050 24 O -0.158 6.158 25 C 0.379 3.621 26 O -0.416 6.416 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.152 0.848 38 H 0.124 0.876 39 H 0.168 0.832 40 H 0.190 0.810 41 H 0.197 0.803 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 3.166 -3.754 20.383 20.966 hybrid contribution -0.372 0.695 -1.436 1.638 sum 2.794 -3.059 18.947 19.394 Atomic orbital electron populations 1.22137 0.95516 1.02579 1.01216 1.21594 0.93795 0.83303 1.03462 1.43777 1.56081 1.13151 1.04464 1.19320 1.36667 0.97953 0.93309 0.92809 1.26078 0.93154 0.96643 1.03681 1.69976 1.29390 1.18014 1.35129 0.85135 0.78081 0.78599 0.78061 1.20018 1.20331 1.18626 1.21424 0.80894 0.87472 0.86811 1.90484 1.52490 1.21358 1.87988 1.21475 1.04579 0.99379 0.90190 1.21503 1.01755 0.98158 0.93091 1.21897 1.05234 0.90345 0.80906 1.45971 1.10713 1.37233 1.33012 1.18970 0.90267 1.00654 0.94849 1.20560 0.88676 1.01419 1.01948 1.21536 0.99520 0.96619 0.93111 1.21471 0.95527 0.95373 0.99263 1.20487 0.90011 1.01791 0.97718 1.19640 0.83906 0.99479 1.01978 1.84906 1.25556 1.57302 1.47999 1.18699 0.85216 0.79057 0.79089 1.91104 1.16113 1.70474 1.63923 0.92571 0.94496 0.89450 0.90400 0.90608 0.91704 0.86721 0.87564 0.94388 0.92288 0.84781 0.87646 0.83183 0.80969 0.80307 0.82307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 10.15 71.98 0.73 -4.45 16 2 C 0.10 4.14 5.41 86.38 0.47 4.61 16 3 N -0.46 -23.17 2.50 -635.52 -1.59 -24.76 16 4 C -0.34 -19.80 8.84 84.04 0.74 -19.06 16 5 H 0.05 3.37 7.82 -2.91 -0.02 3.35 16 6 C 0.01 0.39 4.95 84.92 0.42 0.81 16 7 N -0.89 -47.33 11.61 21.66 0.25 -47.08 16 8 Si 0.98 42.73 29.59 68.60 2.03 44.76 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 12 C 0.44 21.84 7.59 87.65 0.67 22.51 16 13 O -0.64 -37.54 15.89 -3.07 -0.05 -37.59 16 14 C -0.12 -3.85 4.31 29.85 0.13 -3.72 16 15 C -0.11 -3.43 4.83 30.59 0.15 -3.28 16 16 C 0.13 3.16 6.04 86.38 0.52 3.69 16 17 N -0.54 -14.69 2.81 -761.03 -2.14 -16.83 16 18 C 0.05 1.14 6.84 38.31 0.26 1.40 16 19 C -0.11 -1.70 10.03 22.33 0.22 -1.48 16 20 C -0.09 -0.92 10.04 22.29 0.22 -0.69 16 21 C -0.10 -0.90 10.03 22.28 0.22 -0.68 16 22 C -0.08 -1.20 10.06 22.33 0.22 -0.98 16 23 C 0.00 -0.10 7.35 22.66 0.17 0.06 16 24 O -0.25 -7.60 10.72 8.47 0.09 -7.50 16 25 C 0.62 20.76 9.07 129.79 1.18 21.94 16 26 O -0.53 -20.96 17.81 19.20 0.34 -20.62 16 27 H 0.06 1.71 6.60 -2.39 -0.02 1.69 16 28 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.08 3.59 5.76 -2.39 -0.01 3.58 16 31 H 0.08 2.62 6.66 -2.38 -0.02 2.61 16 32 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 33 H 0.11 3.12 7.41 -2.38 -0.02 3.10 16 34 H 0.11 3.03 6.54 -2.39 -0.02 3.01 16 35 H 0.04 1.50 8.10 -2.39 -0.02 1.48 16 36 H 0.06 2.07 8.10 -2.39 -0.02 2.05 16 37 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.11 2.34 8.06 -2.39 -0.02 2.32 16 39 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 40 H 0.17 0.65 8.06 -2.91 -0.02 0.62 16 41 H 0.18 0.30 8.06 -2.91 -0.02 0.27 16 42 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -81.94 357.80 6.30 -75.64 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.04 Total: 13.29 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 6.33 Total: 20.68 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -3.48 Total: -88.67 kcal Atomic # 8 Polarization: -66.09 SS G_CDS: 0.38 Total: -65.71 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -81.94 6.30 -75.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687858.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.439 kcal (2) G-P(sol) polarization free energy of solvation -81.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds