Wall clock time and date at job start Tue Mar 31 2020 13:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.47038 * 2 1 4 4 C 1.34711 * 117.00428 * 179.97438 * 3 2 1 5 5 O 1.21460 * 119.99667 * 0.02562 * 4 3 2 6 6 C 1.47808 * 120.00362 * 179.97438 * 4 3 2 7 7 C 1.40015 * 120.45600 * 354.66879 * 6 4 3 8 8 C 1.38332 * 118.36076 * 180.02562 * 7 6 4 9 9 C 1.39467 * 119.19596 * 0.02562 * 8 7 6 10 10 C 1.48091 * 119.57615 * 179.97438 * 9 8 7 11 11 O 1.21560 * 120.00001 * 352.47440 * 10 9 8 12 12 N 1.34775 * 120.00015 * 172.47765 * 10 9 8 13 13 C 1.36594 * 120.00031 * 183.34705 * 12 10 9 14 14 H 1.08000 * 120.00079 * 220.48610 * 13 12 10 15 15 C 1.39245 * 119.99962 * 40.49163 * 13 12 10 16 16 N 1.31236 * 119.99995 * 12.57328 * 15 13 12 17 17 Si 1.86800 * 119.99999 * 192.57665 * 15 13 12 18 18 H 1.48502 * 109.47141 * 269.99683 * 17 15 13 19 19 H 1.48500 * 109.47183 * 29.99585 * 17 15 13 20 20 H 1.48503 * 109.47068 * 149.99888 * 17 15 13 21 21 C 1.46508 * 119.99874 * 3.34856 * 12 10 9 22 22 C 1.52999 * 117.49452 * 180.64519 * 21 12 10 23 23 C 1.52992 * 117.49496 * 112.02051 * 21 12 10 24 24 N 1.32825 * 120.84886 * 0.24892 * 9 8 7 25 25 C 1.31398 * 121.79059 * 359.47803 * 24 9 8 26 26 C 1.50700 * 119.63713 * 180.26581 * 25 24 9 27 27 H 1.08997 * 109.47684 * 299.99829 * 1 2 3 28 28 H 1.08994 * 109.47448 * 60.00671 * 1 2 3 29 29 H 1.09000 * 109.46846 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47317 * 239.99806 * 2 1 3 31 31 H 1.09006 * 109.47072 * 119.99304 * 2 1 3 32 32 H 1.07992 * 120.82095 * 0.04112 * 7 6 4 33 33 H 1.08006 * 120.40562 * 179.97438 * 8 7 6 34 34 H 0.96998 * 120.00171 * 174.97819 * 16 15 13 35 35 H 1.09005 * 115.54934 * 326.35234 * 21 12 10 36 36 H 1.08996 * 117.50227 * 359.97438 * 22 21 12 37 37 H 1.08996 * 117.49639 * 145.02357 * 22 21 12 38 38 H 1.09004 * 117.49789 * 214.97486 * 23 21 12 39 39 H 1.09002 * 117.50644 * 359.97438 * 23 21 12 40 40 H 1.08999 * 109.46855 * 264.63952 * 26 25 24 41 41 H 1.08997 * 109.47288 * 24.64379 * 26 25 24 42 42 H 1.09004 * 109.46782 * 144.64411 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3494 1.5456 0.0005 5 8 4.0893 0.5824 0.0005 6 6 3.9143 2.9115 0.0000 7 6 3.0751 4.0265 -0.1132 8 6 3.6501 5.2847 -0.1095 9 6 5.0352 5.3994 0.0054 10 6 5.6597 6.7422 0.0097 11 8 4.9856 7.7267 -0.2230 12 7 6.9753 6.8728 0.2714 13 6 7.5373 8.1157 0.3429 14 1 8.5128 8.2927 -0.0856 15 6 6.8528 9.1544 0.9685 16 7 5.7939 8.8960 1.6994 17 14 7.4416 10.9157 0.7672 18 1 8.4123 11.2392 1.8434 19 1 8.0993 11.0697 -0.5553 20 1 6.2813 11.8385 0.8534 21 6 7.8025 5.6816 0.4793 22 6 9.2856 5.8967 0.7877 23 6 8.8584 5.3613 -0.5805 24 7 5.8021 4.3195 0.1055 25 6 5.2940 3.1077 0.1110 26 6 6.2090 1.9165 0.2330 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0054 3.9073 -0.2010 33 1 3.0338 6.1675 -0.1954 34 1 5.3601 9.6089 2.1938 35 1 7.3041 4.8416 0.9632 36 1 9.6459 6.9242 0.8355 37 1 9.7632 5.1981 1.4747 38 1 9.0551 4.3105 -0.7935 39 1 8.9374 6.0364 -1.4326 40 1 6.4376 1.5309 -0.7604 41 1 7.1326 2.2170 0.7277 42 1 5.7183 1.1402 0.8201 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068230828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:16 Heat of formation + Delta-G solvation = -22.176148 kcal Electronic energy + Delta-G solvation = -26867.961750 eV Core-core repulsion = 23008.821394 eV Total energy + Delta-G solvation = -3859.140356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.81864 -39.69177 -38.10416 -36.67163 -35.97912 -33.05590 -32.90721 -32.24761 -31.69081 -30.80110 -27.63613 -26.15947 -24.48784 -23.40372 -21.97711 -21.70156 -21.38802 -20.89635 -19.69277 -17.96527 -17.35751 -16.79253 -16.65481 -16.10419 -15.77288 -14.90410 -14.72381 -14.52989 -14.10439 -13.97842 -13.82459 -13.56646 -13.11830 -13.04327 -13.01009 -12.82373 -12.40973 -12.16889 -12.01948 -11.94082 -11.82807 -11.61528 -11.15694 -11.03302 -10.91339 -10.68096 -10.62584 -10.31695 -10.19545 -9.92617 -9.86173 -9.60199 -8.96798 -8.76179 -8.62382 -8.07923 -7.10603 -6.26840 -3.96059 0.58946 1.53797 2.52091 2.56721 3.21821 3.29877 3.32277 3.72256 4.11036 4.40520 4.60926 4.63480 4.69912 4.73421 4.77691 4.89853 4.92849 5.02806 5.19329 5.26630 5.34682 5.46304 5.52512 5.68034 5.74090 5.81205 5.85442 5.88027 5.94584 5.97804 6.12920 6.21351 6.27592 6.36169 6.41413 6.50524 6.57664 6.83778 6.95551 7.20437 7.41477 7.74296 8.04447 8.18144 8.84928 9.03284 9.47390 10.18701 10.77659 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021434 B = 0.003560 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.034980 B = 7862.284780 C = 8955.761482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.356 6.356 4 C 0.519 3.481 5 O -0.507 6.507 6 C -0.207 4.207 7 C -0.022 4.022 8 C -0.153 4.153 9 C 0.162 3.838 10 C 0.491 3.509 11 O -0.524 6.524 12 N -0.391 5.391 13 C -0.320 4.320 14 H 0.088 0.912 15 C 0.054 3.946 16 N -0.803 5.803 17 Si 0.922 3.078 18 H -0.279 1.279 19 H -0.269 1.269 20 H -0.282 1.282 21 C 0.079 3.921 22 C -0.190 4.190 23 C -0.197 4.197 24 N -0.469 5.469 25 C 0.190 3.810 26 C -0.110 4.110 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.269 0.731 35 H 0.147 0.853 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.560 -15.008 -1.604 16.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.010 4.010 3 O -0.273 6.273 4 C 0.365 3.635 5 O -0.397 6.397 6 C -0.211 4.211 7 C -0.047 4.047 8 C -0.174 4.174 9 C 0.024 3.976 10 C 0.279 3.721 11 O -0.402 6.402 12 N -0.108 5.108 13 C -0.447 4.447 14 H 0.106 0.894 15 C -0.158 4.158 16 N -0.437 5.437 17 Si 0.748 3.252 18 H -0.205 1.205 19 H -0.194 1.194 20 H -0.207 1.207 21 C -0.026 4.026 22 C -0.228 4.228 23 C -0.236 4.236 24 N -0.182 5.182 25 C 0.050 3.950 26 C -0.167 4.167 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.079 0.921 35 H 0.164 0.836 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.021 -14.540 -1.598 15.465 hybrid contribution -0.671 0.564 -0.054 0.878 sum -5.692 -13.976 -1.652 15.181 Atomic orbital electron populations 1.21808 0.92681 1.02881 1.03640 1.23002 0.95266 0.80195 1.02585 1.86555 1.24126 1.32213 1.84435 1.21022 0.80278 0.89635 0.72522 1.90754 1.59634 1.42701 1.46601 1.19835 0.94981 0.90584 1.15730 1.21749 1.00223 0.91108 0.91618 1.22039 0.95561 0.98191 1.01638 1.22419 0.91190 0.94170 0.89835 1.17198 0.83493 0.85249 0.86117 1.90629 1.61224 1.37036 1.51322 1.42737 1.06088 1.04252 1.57755 1.19236 1.04132 0.84795 1.36574 0.89407 1.25376 0.95358 1.00251 0.94815 1.69802 1.17058 1.34011 1.22819 0.86031 0.78087 0.82321 0.78744 1.20517 1.19394 1.20689 1.22672 0.87050 0.91837 1.01086 1.23187 0.99092 1.02347 0.98199 1.23149 1.06759 1.00320 0.93361 1.68306 1.37557 0.97470 1.14897 1.21641 0.90016 0.93997 0.89340 1.21061 0.98176 0.93766 1.03678 0.91410 0.91430 0.90299 0.91226 0.91213 0.83768 0.83203 0.92059 0.83611 0.88086 0.89805 0.89765 0.89705 0.90078 0.90906 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.29 37.16 0.38 -0.64 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.36 -4.42 9.55 -40.52 -0.39 -4.81 16 4 C 0.52 7.47 7.84 34.65 0.27 7.74 16 5 O -0.51 -7.69 13.11 -19.23 -0.25 -7.94 16 6 C -0.21 -3.25 5.90 -104.73 -0.62 -3.87 16 7 C -0.02 -0.33 9.73 -38.88 -0.38 -0.71 16 8 C -0.15 -2.86 9.62 -39.09 -0.38 -3.24 16 9 C 0.16 3.51 6.67 -82.94 -0.55 2.96 16 10 C 0.49 12.85 6.83 -12.22 -0.08 12.77 16 11 O -0.52 -15.33 13.68 5.31 0.07 -15.26 16 12 N -0.39 -10.00 2.86 -108.72 -0.31 -10.32 16 13 C -0.32 -8.56 8.21 -15.06 -0.12 -8.68 16 14 H 0.09 2.24 6.91 -52.49 -0.36 1.88 16 15 C 0.05 1.48 4.58 -17.43 -0.08 1.40 16 16 N -0.80 -23.07 11.03 55.51 0.61 -22.46 16 17 Si 0.92 21.01 29.58 -169.99 -5.03 15.98 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.08 1.68 5.10 -67.93 -0.35 1.33 16 22 C -0.19 -3.55 9.78 -26.73 -0.26 -3.81 16 23 C -0.20 -3.62 10.39 -26.73 -0.28 -3.89 16 24 N -0.47 -9.09 5.89 -5.75 -0.03 -9.13 16 25 C 0.19 3.20 6.82 -82.20 -0.56 2.64 16 26 C -0.11 -1.54 8.92 36.01 0.32 -1.22 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.14 1.78 7.70 -52.49 -0.40 1.37 16 33 H 0.15 2.81 7.65 -52.48 -0.40 2.41 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 35 H 0.15 3.03 5.33 -52.06 -0.28 2.75 16 36 H 0.10 2.01 6.57 -51.93 -0.34 1.67 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.10 1.34 5.74 -51.93 -0.30 1.04 16 LS Contribution 353.51 15.07 5.33 5.33 Total: -1.00 -31.82 353.51 -7.90 -39.72 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.45 Total: 5.30 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -2.45 Total: 3.58 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.27 Total: -41.90 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.57 Total: -28.01 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.82 -7.90 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068230828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.545 kcal (2) G-P(sol) polarization free energy of solvation -31.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds