Wall clock time and date at job start Tue Mar 31 2020 13:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46861 * 2 1 4 4 C 1.37102 * 119.99843 * 264.79109 * 3 2 1 5 5 H 1.07995 * 119.99930 * 146.19199 * 4 3 2 6 6 C 1.38950 * 119.99744 * 326.18154 * 4 3 2 7 7 N 1.31413 * 120.00056 * 337.58957 * 6 4 3 8 8 Si 1.86802 * 119.99912 * 157.58936 * 6 4 3 9 9 H 1.48500 * 109.47025 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47192 * 120.00181 * 8 6 4 11 11 H 1.48500 * 109.47106 * 240.00141 * 8 6 4 12 12 C 1.34770 * 120.00303 * 84.78216 * 3 2 1 13 13 O 1.21292 * 120.00500 * 180.02562 * 12 3 2 14 14 C 1.50706 * 119.99807 * 0.02562 * 12 3 2 15 15 N 1.46501 * 109.46988 * 179.97438 * 14 12 3 16 16 C 1.40214 * 120.50464 * 90.00890 * 15 14 12 17 17 C 1.38506 * 120.73852 * 15.47487 * 16 15 14 18 18 C 1.38285 * 119.81361 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.19969 * 359.97438 * 18 17 16 20 20 C 1.38314 * 120.26004 * 359.97438 * 19 18 17 21 21 C 1.38405 * 119.87314 * 359.97438 * 20 19 18 22 22 O 1.35986 * 120.66925 * 180.12638 * 21 20 19 23 23 C 1.43005 * 116.71088 * 147.16264 * 22 21 20 24 24 H 1.08992 * 109.41914 * 286.36413 * 23 22 21 25 25 C 1.53001 * 109.43902 * 166.44654 * 23 22 21 26 26 C 1.35090 * 120.51419 * 269.97831 * 15 14 12 27 27 O 1.21295 * 120.13468 * 1.66944 * 26 15 14 28 28 H 1.08999 * 109.47393 * 299.99647 * 1 2 3 29 29 H 1.08993 * 109.47971 * 60.00241 * 1 2 3 30 30 H 1.09007 * 109.46547 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46917 * 240.00217 * 2 1 3 32 32 H 1.08992 * 109.47451 * 119.99814 * 2 1 3 33 33 H 0.97009 * 119.99864 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.46869 * 59.99886 * 14 12 3 35 35 H 1.08992 * 109.47233 * 300.00104 * 14 12 3 36 36 H 1.07990 * 120.09009 * 0.06449 * 17 16 15 37 37 H 1.07999 * 119.90305 * 179.97438 * 18 17 16 38 38 H 1.07996 * 119.87147 * 180.26790 * 19 18 17 39 39 H 1.07998 * 120.06704 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.47572 * 299.83364 * 25 23 22 41 41 H 1.08998 * 109.47459 * 59.83809 * 25 23 22 42 42 H 1.09003 * 109.46818 * 179.83427 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3484 1.9916 -1.1824 5 1 2.1808 3.0510 -1.3085 6 6 2.8987 1.2471 -2.2186 7 7 3.5048 0.1100 -1.9608 8 14 2.7769 1.8627 -3.9781 9 1 2.0522 3.1587 -4.0000 10 1 4.1417 2.0498 -4.5326 11 1 2.0405 0.8692 -4.8002 12 6 2.1428 2.0520 1.1623 13 8 2.5466 3.1958 1.1623 14 6 1.7803 1.3810 2.4621 15 7 2.0026 2.3122 3.5710 16 6 0.9762 3.1654 4.0005 17 6 -0.3369 2.9397 3.6221 18 6 -1.3340 3.7938 4.0564 19 6 -1.0236 4.8705 4.8667 20 6 0.2856 5.1005 5.2489 21 6 1.2890 4.2495 4.8191 22 8 2.5812 4.4590 5.1872 23 6 3.3963 3.2970 5.3618 24 1 3.1142 2.7921 6.2856 25 6 4.8667 3.7131 5.4373 26 6 3.1993 2.3616 4.1958 27 8 4.1110 1.6541 3.8222 28 1 -0.3634 0.5138 0.8900 29 1 -0.3635 0.5137 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8887 -0.4099 -2.6842 34 1 2.4025 0.4967 2.6003 35 1 0.7311 1.0869 2.4389 36 1 -0.5813 2.0988 2.9902 37 1 -2.3583 3.6194 3.7618 38 1 -1.8071 5.5316 5.2064 39 1 0.5245 5.9421 5.8822 40 1 5.1496 4.2171 4.5132 41 1 5.0099 4.3905 6.2791 42 1 5.4882 2.8280 5.5734 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:45 Heat of formation + Delta-G solvation = -53.931297 kcal Electronic energy + Delta-G solvation = -27768.430136 eV Core-core repulsion = 23907.912774 eV Total energy + Delta-G solvation = -3860.517362 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.47744 -38.91208 -38.48448 -37.42319 -35.53889 -34.77516 -32.12331 -32.05736 -30.20411 -29.63862 -29.50793 -27.99657 -25.09784 -23.76886 -23.24992 -22.49999 -22.13723 -19.59136 -19.17157 -18.83546 -17.21662 -16.91415 -16.76840 -16.21236 -15.39101 -15.14846 -15.05084 -14.69926 -14.53869 -14.25294 -14.21214 -13.75171 -13.55520 -13.14451 -12.96500 -12.92607 -12.60828 -12.25498 -12.16130 -12.02640 -11.87576 -11.81611 -11.33242 -11.14350 -11.10773 -11.07577 -11.02822 -10.47102 -10.38096 -10.30836 -10.13401 -9.69961 -8.98795 -8.69750 -8.47776 -7.63205 -7.52488 -6.35074 -3.96308 1.17404 1.30760 2.49259 2.64436 3.13792 3.25455 3.32224 3.33847 3.72532 3.81303 4.10827 4.14191 4.68441 4.75549 4.80765 4.85944 4.97040 4.99629 5.15136 5.27865 5.37399 5.45071 5.60601 5.63720 5.65767 5.71297 5.75670 5.89898 6.04063 6.10895 6.13077 6.18752 6.23471 6.39208 6.45754 6.51116 6.69328 6.81320 7.04750 7.20940 7.47267 7.58078 7.96249 8.20666 8.47619 9.15279 9.36475 9.94895 10.68518 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015416 B = 0.004482 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.912131 B = 6245.269772 C = 6985.916383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.436 5.436 4 C -0.306 4.306 5 H 0.093 0.907 6 C 0.035 3.965 7 N -0.867 5.867 8 Si 0.918 3.082 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.444 3.556 13 O -0.569 6.569 14 C 0.092 3.908 15 N -0.528 5.528 16 C 0.119 3.881 17 C -0.127 4.127 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.111 4.111 21 C 0.078 3.922 22 O -0.301 6.301 23 C 0.083 3.917 24 H 0.099 0.901 25 C -0.134 4.134 26 C 0.492 3.508 27 O -0.498 6.498 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.047 0.953 33 H 0.268 0.732 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.708 2.166 14.880 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.033 4.033 3 N -0.156 5.156 4 C -0.434 4.434 5 H 0.110 0.890 6 C -0.169 4.169 7 N -0.505 5.505 8 Si 0.744 3.256 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.205 1.205 12 C 0.230 3.770 13 O -0.451 6.451 14 C -0.033 4.033 15 N -0.252 5.252 16 C 0.024 3.976 17 C -0.148 4.148 18 C -0.128 4.128 19 C -0.140 4.140 20 C -0.130 4.130 21 C 0.032 3.968 22 O -0.216 6.216 23 C 0.024 3.976 24 H 0.117 0.883 25 C -0.192 4.192 26 C 0.279 3.721 27 O -0.371 6.371 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.117 0.883 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.702 2.299 14.550 16.622 hybrid contribution -0.097 -0.202 -1.146 1.168 sum -7.799 2.097 13.404 15.649 Atomic orbital electron populations 1.22217 0.98078 1.00510 1.01406 1.21658 0.91775 0.85499 1.04412 1.43503 1.55649 1.11761 1.04643 1.19493 1.39952 0.95504 0.88416 0.88973 1.25345 0.94405 0.96522 1.00595 1.69943 1.32412 1.15328 1.32829 0.86007 0.78186 0.79107 0.82267 1.19177 1.20742 1.20519 1.20397 0.83406 0.88483 0.84721 1.90553 1.49769 1.18473 1.86304 1.21705 1.03144 0.92588 0.85841 1.45255 1.11097 1.36957 1.31848 1.18121 0.89301 0.92346 0.97847 1.20703 0.90181 1.01518 1.02357 1.20927 0.98982 0.94818 0.98098 1.20893 0.95428 0.98352 0.99315 1.20451 0.90663 1.00301 1.01540 1.18591 0.84388 0.95551 0.98280 1.86203 1.18742 1.31421 1.85272 1.22606 0.94165 0.84972 0.95880 0.88330 1.21706 0.89989 1.03369 1.04111 1.21402 0.81780 0.83957 0.84916 1.90757 1.39298 1.42260 1.64795 0.94306 0.92150 0.92807 0.86536 0.93506 0.92211 0.87316 0.88265 0.85119 0.85302 0.85218 0.84692 0.90743 0.90459 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 10.15 37.16 0.38 -2.43 16 2 C 0.09 1.95 5.44 -4.04 -0.02 1.93 16 3 N -0.44 -11.20 2.56 -114.81 -0.29 -11.49 16 4 C -0.31 -8.63 8.98 -14.93 -0.13 -8.76 16 5 H 0.09 2.75 7.70 -52.49 -0.40 2.35 16 6 C 0.04 0.95 4.92 -17.47 -0.09 0.86 16 7 N -0.87 -23.63 11.34 55.50 0.63 -23.00 16 8 Si 0.92 20.79 29.61 -169.99 -5.03 15.75 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 12 C 0.44 11.28 7.66 -10.99 -0.08 11.20 16 13 O -0.57 -16.80 16.25 5.55 0.09 -16.71 16 14 C 0.09 1.82 4.29 -5.19 -0.02 1.80 16 15 N -0.53 -10.13 2.21 -114.48 -0.25 -10.39 16 16 C 0.12 2.02 6.39 -83.49 -0.53 1.49 16 17 C -0.13 -1.83 9.36 -39.47 -0.37 -2.20 16 18 C -0.11 -1.27 10.04 -39.55 -0.40 -1.67 16 19 C -0.12 -1.31 10.04 -39.54 -0.40 -1.70 16 20 C -0.11 -1.37 10.00 -39.49 -0.39 -1.77 16 21 C 0.08 1.23 6.44 -39.09 -0.25 0.98 16 22 O -0.30 -4.80 10.09 -19.69 -0.20 -5.00 16 23 C 0.08 1.23 3.69 -27.84 -0.10 1.13 16 24 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 25 C -0.13 -1.73 9.14 37.16 0.34 -1.39 16 26 C 0.49 9.44 7.37 -10.80 -0.08 9.36 16 27 O -0.50 -10.96 15.83 5.54 0.09 -10.87 16 28 H 0.04 0.60 6.60 -51.93 -0.34 0.25 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 31 H 0.12 2.79 5.34 -51.93 -0.28 2.51 16 32 H 0.05 0.92 6.66 -51.93 -0.35 0.58 16 33 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.11 2.15 6.76 -51.93 -0.35 1.80 16 35 H 0.10 1.62 4.36 -51.93 -0.23 1.40 16 36 H 0.13 1.76 6.12 -52.49 -0.32 1.44 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.09 1.10 7.86 -51.93 -0.41 0.70 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -35.44 347.69 -7.08 -42.52 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.19 Total: 5.12 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: -2.16 Total: 8.82 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.08 Total: -44.87 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.02 Total: -32.58 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.44 -7.08 -42.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.407 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds