Wall clock time and date at job start Tue Mar 31 2020 13:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46861 * 2 1 4 4 C 1.37102 * 119.99843 * 264.79109 * 3 2 1 5 5 H 1.07995 * 119.99930 * 146.19199 * 4 3 2 6 6 C 1.38950 * 119.99744 * 326.18154 * 4 3 2 7 7 N 1.31413 * 120.00056 * 337.58957 * 6 4 3 8 8 Si 1.86802 * 119.99912 * 157.58936 * 6 4 3 9 9 H 1.48500 * 109.47025 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47192 * 120.00181 * 8 6 4 11 11 H 1.48500 * 109.47106 * 240.00141 * 8 6 4 12 12 C 1.34770 * 120.00303 * 84.78216 * 3 2 1 13 13 O 1.21292 * 120.00500 * 180.02562 * 12 3 2 14 14 C 1.50706 * 119.99807 * 0.02562 * 12 3 2 15 15 N 1.46501 * 109.46988 * 179.97438 * 14 12 3 16 16 C 1.40214 * 120.50464 * 90.00890 * 15 14 12 17 17 C 1.38506 * 120.73852 * 15.47487 * 16 15 14 18 18 C 1.38285 * 119.81361 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.19969 * 359.97438 * 18 17 16 20 20 C 1.38314 * 120.26004 * 359.97438 * 19 18 17 21 21 C 1.38405 * 119.87314 * 359.97438 * 20 19 18 22 22 O 1.35986 * 120.66925 * 180.12638 * 21 20 19 23 23 C 1.43005 * 116.71088 * 147.16264 * 22 21 20 24 24 H 1.08992 * 109.41914 * 286.36413 * 23 22 21 25 25 C 1.53001 * 109.43902 * 166.44654 * 23 22 21 26 26 C 1.35090 * 120.51419 * 269.97831 * 15 14 12 27 27 O 1.21295 * 120.13468 * 1.66944 * 26 15 14 28 28 H 1.08999 * 109.47393 * 299.99647 * 1 2 3 29 29 H 1.08993 * 109.47971 * 60.00241 * 1 2 3 30 30 H 1.09007 * 109.46547 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46917 * 240.00217 * 2 1 3 32 32 H 1.08992 * 109.47451 * 119.99814 * 2 1 3 33 33 H 0.97009 * 119.99864 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.46869 * 59.99886 * 14 12 3 35 35 H 1.08992 * 109.47233 * 300.00104 * 14 12 3 36 36 H 1.07990 * 120.09009 * 0.06449 * 17 16 15 37 37 H 1.07999 * 119.90305 * 179.97438 * 18 17 16 38 38 H 1.07996 * 119.87147 * 180.26790 * 19 18 17 39 39 H 1.07998 * 120.06704 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.47572 * 299.83364 * 25 23 22 41 41 H 1.08998 * 109.47459 * 59.83809 * 25 23 22 42 42 H 1.09003 * 109.46818 * 179.83427 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3484 1.9916 -1.1824 5 1 2.1808 3.0510 -1.3085 6 6 2.8987 1.2471 -2.2186 7 7 3.5048 0.1100 -1.9608 8 14 2.7769 1.8627 -3.9781 9 1 2.0522 3.1587 -4.0000 10 1 4.1417 2.0498 -4.5326 11 1 2.0405 0.8692 -4.8002 12 6 2.1428 2.0520 1.1623 13 8 2.5466 3.1958 1.1623 14 6 1.7803 1.3810 2.4621 15 7 2.0026 2.3122 3.5710 16 6 0.9762 3.1654 4.0005 17 6 -0.3369 2.9397 3.6221 18 6 -1.3340 3.7938 4.0564 19 6 -1.0236 4.8705 4.8667 20 6 0.2856 5.1005 5.2489 21 6 1.2890 4.2495 4.8191 22 8 2.5812 4.4590 5.1872 23 6 3.3963 3.2970 5.3618 24 1 3.1142 2.7921 6.2856 25 6 4.8667 3.7131 5.4373 26 6 3.1993 2.3616 4.1958 27 8 4.1110 1.6541 3.8222 28 1 -0.3634 0.5138 0.8900 29 1 -0.3635 0.5137 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8887 -0.4099 -2.6842 34 1 2.4025 0.4967 2.6003 35 1 0.7311 1.0869 2.4389 36 1 -0.5813 2.0988 2.9902 37 1 -2.3583 3.6194 3.7618 38 1 -1.8071 5.5316 5.2064 39 1 0.5245 5.9421 5.8822 40 1 5.1496 4.2171 4.5132 41 1 5.0099 4.3905 6.2791 42 1 5.4882 2.8280 5.5734 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:44 Heat of formation + Delta-G solvation = -77.385925 kcal Electronic energy + Delta-G solvation = -27769.447205 eV Core-core repulsion = 23907.912774 eV Total energy + Delta-G solvation = -3861.534431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.73509 -40.56102 -39.93244 -38.64323 -37.16720 -36.49392 -34.12149 -33.17319 -31.29074 -31.26148 -30.92366 -29.33424 -26.95811 -25.13825 -24.36425 -24.01571 -23.42588 -21.17116 -20.40686 -20.23451 -18.93748 -18.42735 -18.19852 -17.80120 -16.99003 -16.68601 -16.45216 -16.14852 -15.92595 -15.69087 -15.49758 -15.27228 -15.00329 -14.59846 -14.47941 -14.22210 -13.87158 -13.74693 -13.64843 -13.31378 -13.21252 -13.00800 -12.92883 -12.83897 -12.71958 -12.34288 -12.21915 -12.15163 -12.10566 -11.86985 -11.75946 -11.07361 -10.96747 -10.49162 -9.65213 -9.56227 -8.86868 -8.40564 -6.11467 0.07577 0.30711 1.11744 1.31080 1.37324 1.39708 1.52325 1.88319 2.20804 2.25360 2.69861 2.88655 2.94609 3.00114 3.57301 3.67476 3.78177 3.86033 3.88196 4.01154 4.07723 4.29016 4.32060 4.37695 4.49142 4.56678 4.59345 4.67536 4.76938 4.77423 4.96934 4.99107 5.06420 5.24710 5.27359 5.31926 5.39787 5.51509 5.52504 5.72625 5.84321 6.11699 6.28500 6.43164 6.59328 7.09229 7.35914 7.94593 8.61439 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015416 B = 0.004482 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.912131 B = 6245.269772 C = 6985.916383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.087 3.913 3 N -0.445 5.445 4 C -0.343 4.343 5 H 0.061 0.939 6 C 0.004 3.996 7 N -0.887 5.887 8 Si 0.985 3.015 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.257 1.257 12 C 0.429 3.571 13 O -0.624 6.624 14 C 0.106 3.894 15 N -0.535 5.535 16 C 0.076 3.924 17 C -0.139 4.139 18 C -0.105 4.105 19 C -0.105 4.105 20 C -0.110 4.110 21 C 0.053 3.947 22 O -0.312 6.312 23 C 0.087 3.913 24 H 0.136 0.864 25 C -0.130 4.130 26 C 0.476 3.524 27 O -0.545 6.545 28 H 0.056 0.944 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.276 0.724 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.164 0.836 38 H 0.173 0.827 39 H 0.160 0.840 40 H 0.043 0.957 41 H 0.113 0.887 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.486 2.429 16.024 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.036 4.036 3 N -0.164 5.164 4 C -0.471 4.471 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.525 5.525 8 Si 0.808 3.192 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.181 1.181 12 C 0.218 3.782 13 O -0.511 6.511 14 C -0.019 4.019 15 N -0.258 5.258 16 C -0.017 4.017 17 C -0.159 4.159 18 C -0.124 4.124 19 C -0.123 4.123 20 C -0.129 4.129 21 C 0.007 3.993 22 O -0.227 6.227 23 C 0.028 3.972 24 H 0.153 0.847 25 C -0.187 4.187 26 C 0.265 3.735 27 O -0.422 6.422 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.181 0.819 38 H 0.190 0.810 39 H 0.178 0.822 40 H 0.062 0.938 41 H 0.131 0.869 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.536 2.538 15.712 19.087 hybrid contribution 0.701 -0.237 -1.483 1.657 sum -9.835 2.301 14.229 17.449 Atomic orbital electron populations 1.22103 0.94339 1.02952 1.01609 1.21813 0.94842 0.83107 1.03869 1.43803 1.55294 1.13065 1.04228 1.19404 1.42341 0.94795 0.90539 0.92085 1.26128 0.93215 0.96525 1.04042 1.70014 1.32105 1.16025 1.34326 0.85035 0.78169 0.78801 0.77236 1.19621 1.20606 1.18129 1.21305 0.82510 0.88031 0.86401 1.90495 1.52218 1.20958 1.87411 1.21494 1.04927 0.91995 0.83454 1.45349 1.11989 1.37242 1.31251 1.18528 0.89700 0.93413 1.00071 1.20972 0.89935 1.02473 1.02548 1.21386 0.99857 0.94002 0.97127 1.21443 0.95665 0.97916 0.97275 1.20893 0.90646 1.00039 1.01281 1.19047 0.84842 0.96248 0.99134 1.86167 1.19322 1.31791 1.85458 1.22818 0.94986 0.84269 0.95158 0.84670 1.21742 0.89005 1.04021 1.03939 1.22379 0.81272 0.83988 0.85859 1.90709 1.40594 1.44360 1.66522 0.92470 0.93569 0.89144 0.88875 0.92129 0.91473 0.87704 0.84715 0.84812 0.81894 0.80998 0.82216 0.93822 0.86853 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 10.15 71.98 0.73 -4.25 16 2 C 0.09 3.76 5.44 86.38 0.47 4.23 16 3 N -0.44 -23.73 2.56 -635.55 -1.63 -25.36 16 4 C -0.34 -20.21 8.98 84.04 0.75 -19.46 16 5 H 0.06 3.89 7.70 -2.91 -0.02 3.87 16 6 C 0.00 0.19 4.92 84.93 0.42 0.61 16 7 N -0.89 -49.15 11.34 21.66 0.25 -48.90 16 8 Si 0.98 43.23 29.61 68.60 2.03 45.26 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 12 C 0.43 22.85 7.66 87.66 0.67 23.52 16 13 O -0.62 -39.21 16.25 -3.07 -0.05 -39.26 16 14 C 0.11 4.34 4.29 85.63 0.37 4.71 16 15 N -0.54 -21.15 2.21 -634.31 -1.40 -22.55 16 16 C 0.08 2.58 6.39 38.14 0.24 2.82 16 17 C -0.14 -3.80 9.36 22.34 0.21 -3.59 16 18 C -0.11 -2.07 10.04 22.29 0.22 -1.85 16 19 C -0.10 -1.81 10.04 22.30 0.22 -1.59 16 20 C -0.11 -2.42 10.00 22.33 0.22 -2.20 16 21 C 0.05 1.63 6.44 22.59 0.15 1.77 16 22 O -0.31 -9.87 10.09 -93.39 -0.94 -10.81 16 23 C 0.09 2.57 3.69 29.87 0.11 2.68 16 24 H 0.14 2.96 8.14 -2.39 -0.02 2.94 16 25 C -0.13 -3.39 9.14 71.98 0.66 -2.73 16 26 C 0.48 19.05 7.37 87.63 0.65 19.70 16 27 O -0.54 -25.46 15.83 -3.08 -0.05 -25.50 16 28 H 0.06 1.64 6.60 -2.39 -0.02 1.63 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.09 4.52 5.34 -2.39 -0.01 4.50 16 32 H 0.06 2.40 6.66 -2.39 -0.02 2.39 16 33 H 0.28 14.10 8.31 -92.70 -0.77 13.33 16 34 H 0.11 4.31 6.76 -2.39 -0.02 4.29 16 35 H 0.14 4.35 4.36 -2.39 -0.01 4.34 16 36 H 0.13 3.40 6.12 -2.92 -0.02 3.38 16 37 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 38 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 39 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.09 2.37 7.86 -2.39 -0.02 2.35 16 Total: -1.00 -83.98 347.69 5.36 -78.62 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 1.05 Total: 24.11 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: 6.09 Total: 24.38 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -2.78 Total: -96.80 kcal Atomic # 8 Polarization: -74.54 SS G_CDS: -1.04 Total: -75.58 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -83.98 5.36 -78.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.236 kcal (2) G-P(sol) polarization free energy of solvation -83.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds