Wall clock time and date at job start Tue Mar 31 2020 13:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47203 * 2 1 4 4 C 1.37101 * 120.00432 * 88.62350 * 3 2 1 5 5 H 1.07998 * 120.00436 * 316.49466 * 4 3 2 6 6 C 1.38951 * 119.99892 * 136.48799 * 4 3 2 7 7 N 1.31416 * 119.99976 * 160.82730 * 6 4 3 8 8 Si 1.86802 * 120.00119 * 340.83104 * 6 4 3 9 9 H 1.48495 * 109.47404 * 94.20303 * 8 6 4 10 10 H 1.48508 * 109.47199 * 214.20118 * 8 6 4 11 11 H 1.48493 * 109.47019 * 334.19748 * 8 6 4 12 12 C 1.34781 * 120.00232 * 268.62953 * 3 2 1 13 13 O 1.21289 * 120.00405 * 180.02562 * 12 3 2 14 14 C 1.50704 * 119.99615 * 359.97438 * 12 3 2 15 15 N 1.46497 * 109.47282 * 180.02562 * 14 12 3 16 16 C 1.40212 * 120.50669 * 269.72524 * 15 14 12 17 17 C 1.38630 * 120.65067 * 15.87891 * 16 15 14 18 18 C 1.38288 * 119.78583 * 179.79565 * 17 16 15 19 19 C 1.38272 * 120.19933 * 359.74170 * 18 17 16 20 20 C 1.38314 * 120.25984 * 0.02562 * 19 18 17 21 21 C 1.38399 * 119.87215 * 359.97438 * 20 19 18 22 22 O 1.35983 * 120.65808 * 179.97438 * 21 20 19 23 23 C 1.42997 * 116.71243 * 147.18387 * 22 21 20 24 24 H 1.08998 * 109.44000 * 166.42114 * 23 22 21 25 25 C 1.53003 * 109.41197 * 286.32994 * 23 22 21 26 26 C 1.35084 * 120.50583 * 89.99871 * 15 14 12 27 27 O 1.21294 * 120.13127 * 1.70217 * 26 15 14 28 28 H 1.09003 * 109.46909 * 54.75659 * 1 2 3 29 29 H 1.08996 * 109.47174 * 294.75609 * 1 2 3 30 30 H 1.09001 * 109.47126 * 174.75154 * 1 2 3 31 31 H 1.09000 * 109.47061 * 119.99666 * 2 1 3 32 32 H 1.08995 * 109.47243 * 239.99693 * 2 1 3 33 33 H 0.97004 * 119.99898 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47033 * 300.00793 * 14 12 3 35 35 H 1.09002 * 109.46777 * 60.00353 * 14 12 3 36 36 H 1.08004 * 120.12078 * 359.54107 * 17 16 15 37 37 H 1.08002 * 119.89921 * 179.72541 * 18 17 16 38 38 H 1.08004 * 119.87173 * 180.02562 * 19 18 17 39 39 H 1.07996 * 120.06519 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.46852 * 180.16001 * 25 23 22 41 41 H 1.09001 * 109.46718 * 300.15751 * 25 23 22 42 42 H 1.08997 * 109.47300 * 60.15710 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2200 2.0370 1.1869 5 1 1.4891 1.9588 1.9781 6 6 3.3649 2.8023 1.3720 7 7 3.3992 3.7156 2.3163 8 14 4.8553 2.5330 0.2785 9 1 4.8118 3.4844 -0.8608 10 1 6.0941 2.7596 1.0655 11 1 4.8449 1.1410 -0.2383 12 6 2.2693 2.0073 -1.1669 13 8 2.6741 3.1506 -1.1669 14 6 2.0481 1.2862 -2.4716 15 7 2.3910 2.1746 -3.5848 16 6 1.4177 3.0047 -4.1589 17 6 0.2225 3.2518 -3.5013 18 6 -0.7233 4.0767 -4.0821 19 6 -0.4775 4.6585 -5.3122 20 6 0.7152 4.4192 -5.9705 21 6 1.6665 3.5948 -5.3955 22 8 2.8443 3.3482 -6.0289 23 6 3.9917 3.1508 -5.1986 24 1 4.8023 2.7305 -5.7938 25 6 4.4330 4.4939 -4.6134 26 6 3.6485 2.2027 -4.0775 27 8 4.4981 1.4675 -3.6204 28 1 -0.3633 0.5930 -0.8393 29 1 -0.3633 0.4303 0.9332 30 1 -0.3633 -1.0234 -0.0940 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 4.1987 4.2496 2.4457 34 1 2.6796 0.3985 -2.5077 35 1 1.0018 0.9912 -2.5508 36 1 0.0288 2.7984 -2.5404 37 1 -1.6568 4.2670 -3.5734 38 1 -1.2197 5.3022 -5.7607 39 1 0.9040 4.8756 -6.9309 40 1 5.3093 4.3449 -3.9825 41 1 4.6810 5.1793 -5.4238 42 1 3.6232 4.9141 -4.0171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:49 Heat of formation + Delta-G solvation = -47.946010 kcal Electronic energy + Delta-G solvation = -28508.040293 eV Core-core repulsion = 24647.782473 eV Total energy + Delta-G solvation = -3860.257821 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62681 -39.18170 -38.61253 -37.52409 -35.53971 -34.82091 -32.37349 -31.94936 -30.28526 -29.79154 -29.73208 -28.06344 -24.90919 -23.98403 -23.39349 -22.69869 -22.09718 -19.68661 -19.15638 -18.94547 -17.46263 -17.18912 -16.29642 -16.07521 -15.51216 -15.40776 -15.29375 -15.18028 -14.40733 -14.20537 -14.13452 -13.76772 -13.49619 -13.22208 -13.09843 -12.99389 -12.68806 -12.43956 -12.36100 -12.24569 -12.05638 -11.96951 -11.75649 -11.28274 -11.19015 -11.11102 -10.83767 -10.57034 -10.47117 -10.15416 -9.93784 -9.77682 -8.72531 -8.58065 -8.54132 -7.75933 -7.60436 -6.23327 -4.01286 1.14991 1.29830 2.34596 2.71735 3.23708 3.26107 3.53381 3.67589 3.74962 3.78628 3.99626 4.38884 4.54534 4.68189 4.77984 4.84393 4.99765 5.13691 5.18865 5.26709 5.30363 5.36451 5.39510 5.46056 5.56773 5.59329 5.68773 5.70097 5.82002 5.91900 6.04529 6.07959 6.13822 6.19085 6.38804 6.41626 6.49577 6.62179 6.65810 6.98381 7.40872 7.80795 7.83708 7.95662 8.71398 8.85556 9.38655 9.73621 10.81775 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.006181 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.204950 B = 4529.047933 C = 5290.110257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.459 5.459 4 C -0.349 4.349 5 H 0.095 0.905 6 C 0.095 3.905 7 N -0.863 5.863 8 Si 0.909 3.091 9 H -0.259 1.259 10 H -0.307 1.307 11 H -0.279 1.279 12 C 0.432 3.568 13 O -0.531 6.531 14 C 0.090 3.910 15 N -0.527 5.527 16 C 0.114 3.886 17 C -0.113 4.113 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.111 4.111 21 C 0.073 3.927 22 O -0.303 6.303 23 C 0.083 3.917 24 H 0.148 0.852 25 C -0.176 4.176 26 C 0.497 3.503 27 O -0.507 6.507 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.272 0.728 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.135 0.865 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.703 -2.250 -16.246 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.182 5.182 4 C -0.474 4.474 5 H 0.113 0.887 6 C -0.115 4.115 7 N -0.498 5.498 8 Si 0.739 3.261 9 H -0.185 1.185 10 H -0.236 1.236 11 H -0.204 1.204 12 C 0.219 3.781 13 O -0.413 6.413 14 C -0.036 4.036 15 N -0.250 5.250 16 C 0.019 3.981 17 C -0.134 4.134 18 C -0.128 4.128 19 C -0.138 4.138 20 C -0.130 4.130 21 C 0.027 3.973 22 O -0.218 6.218 23 C 0.024 3.976 24 H 0.165 0.835 25 C -0.233 4.233 26 C 0.285 3.715 27 O -0.381 6.381 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.831 -2.020 -16.024 17.171 hybrid contribution 0.821 -0.225 0.047 0.852 sum -5.010 -2.245 -15.977 16.894 Atomic orbital electron populations 1.22145 0.96736 1.00734 1.02499 1.21656 0.94086 0.85415 1.01834 1.43651 1.59403 1.10068 1.05068 1.18747 1.06625 1.30123 0.91944 0.88735 1.25282 0.98273 0.93158 0.94737 1.69757 1.29038 1.18026 1.32967 0.86426 0.79633 0.79387 0.80640 1.18469 1.23628 1.20389 1.20526 0.84687 0.87772 0.85071 1.90566 1.47015 1.17742 1.85946 1.21680 1.02926 0.93329 0.85625 1.45242 1.08510 1.39037 1.32208 1.18123 0.91207 0.95559 0.93194 1.20808 0.92524 1.00204 0.99815 1.20978 0.99247 0.97015 0.95534 1.20919 0.96687 1.00773 0.95417 1.20438 0.93620 0.97565 1.01417 1.18509 0.88053 0.99048 0.91685 1.86238 1.14304 1.87554 1.33678 1.22860 0.88190 0.96021 0.90552 0.83495 1.22313 1.03729 0.94970 1.02312 1.21398 0.81728 0.84158 0.84232 1.90752 1.46416 1.40660 1.60274 0.93283 0.91888 0.92588 0.90263 0.92641 0.91834 0.87484 0.87722 0.84928 0.85227 0.85201 0.84722 0.90028 0.89926 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 10.24 37.16 0.38 -1.99 16 2 C 0.09 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.46 -10.85 2.14 -114.81 -0.25 -11.09 16 4 C -0.35 -9.77 9.68 -14.93 -0.14 -9.91 16 5 H 0.10 2.74 8.06 -52.49 -0.42 2.32 16 6 C 0.09 2.84 4.85 -17.47 -0.08 2.76 16 7 N -0.86 -26.66 13.96 55.50 0.77 -25.88 16 8 Si 0.91 25.59 24.88 -169.99 -4.23 21.36 16 9 H -0.26 -7.70 6.33 56.52 0.36 -7.34 16 10 H -0.31 -8.47 7.11 56.52 0.40 -8.06 16 11 H -0.28 -7.79 7.11 56.52 0.40 -7.39 16 12 C 0.43 10.23 5.53 -10.98 -0.06 10.17 16 13 O -0.53 -14.75 12.06 5.55 0.07 -14.68 16 14 C 0.09 1.68 3.79 -5.19 -0.02 1.66 16 15 N -0.53 -9.89 2.21 -114.49 -0.25 -10.15 16 16 C 0.11 1.90 6.38 -83.50 -0.53 1.36 16 17 C -0.11 -1.73 9.14 -39.42 -0.36 -2.09 16 18 C -0.11 -1.33 10.04 -39.55 -0.40 -1.73 16 19 C -0.12 -1.28 10.04 -39.54 -0.40 -1.68 16 20 C -0.11 -1.32 10.00 -39.49 -0.39 -1.72 16 21 C 0.07 1.08 5.84 -39.14 -0.23 0.85 16 22 O -0.30 -4.38 10.18 -19.69 -0.20 -4.58 16 23 C 0.08 1.24 3.81 -27.84 -0.11 1.14 16 24 H 0.15 1.78 8.14 -51.93 -0.42 1.35 16 25 C -0.18 -2.57 9.30 37.16 0.35 -2.22 16 26 C 0.50 9.53 6.93 -10.81 -0.07 9.45 16 27 O -0.51 -11.17 16.74 5.55 0.09 -11.07 16 28 H 0.05 0.69 7.48 -51.93 -0.39 0.30 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 32 H 0.06 0.86 6.39 -51.93 -0.33 0.52 16 33 H 0.27 7.96 8.31 -40.82 -0.34 7.62 16 34 H 0.11 1.97 6.71 -51.93 -0.35 1.62 16 35 H 0.10 1.59 6.36 -51.93 -0.33 1.26 16 36 H 0.13 2.13 6.48 -52.48 -0.34 1.79 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.23 7.81 -51.93 -0.41 0.83 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -36.53 344.72 -6.45 -42.98 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -5.55 Total: 0.22 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -2.10 Total: 7.70 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.28 Total: -47.12 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.04 Total: -30.34 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -4.23 Total: 21.36 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.53 -6.45 -42.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.969 kcal (2) G-P(sol) polarization free energy of solvation -36.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds