Wall clock time and date at job start Tue Mar 31 2020 13:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47203 * 2 1 4 4 C 1.37101 * 120.00432 * 88.62350 * 3 2 1 5 5 H 1.07998 * 120.00436 * 316.49466 * 4 3 2 6 6 C 1.38951 * 119.99892 * 136.48799 * 4 3 2 7 7 N 1.31416 * 119.99976 * 160.82730 * 6 4 3 8 8 Si 1.86802 * 120.00119 * 340.83104 * 6 4 3 9 9 H 1.48495 * 109.47404 * 94.20303 * 8 6 4 10 10 H 1.48508 * 109.47199 * 214.20118 * 8 6 4 11 11 H 1.48493 * 109.47019 * 334.19748 * 8 6 4 12 12 C 1.34781 * 120.00232 * 268.62953 * 3 2 1 13 13 O 1.21289 * 120.00405 * 180.02562 * 12 3 2 14 14 C 1.50704 * 119.99615 * 359.97438 * 12 3 2 15 15 N 1.46497 * 109.47282 * 180.02562 * 14 12 3 16 16 C 1.40212 * 120.50669 * 269.72524 * 15 14 12 17 17 C 1.38630 * 120.65067 * 15.87891 * 16 15 14 18 18 C 1.38288 * 119.78583 * 179.79565 * 17 16 15 19 19 C 1.38272 * 120.19933 * 359.74170 * 18 17 16 20 20 C 1.38314 * 120.25984 * 0.02562 * 19 18 17 21 21 C 1.38399 * 119.87215 * 359.97438 * 20 19 18 22 22 O 1.35983 * 120.65808 * 179.97438 * 21 20 19 23 23 C 1.42997 * 116.71243 * 147.18387 * 22 21 20 24 24 H 1.08998 * 109.44000 * 166.42114 * 23 22 21 25 25 C 1.53003 * 109.41197 * 286.32994 * 23 22 21 26 26 C 1.35084 * 120.50583 * 89.99871 * 15 14 12 27 27 O 1.21294 * 120.13127 * 1.70217 * 26 15 14 28 28 H 1.09003 * 109.46909 * 54.75659 * 1 2 3 29 29 H 1.08996 * 109.47174 * 294.75609 * 1 2 3 30 30 H 1.09001 * 109.47126 * 174.75154 * 1 2 3 31 31 H 1.09000 * 109.47061 * 119.99666 * 2 1 3 32 32 H 1.08995 * 109.47243 * 239.99693 * 2 1 3 33 33 H 0.97004 * 119.99898 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47033 * 300.00793 * 14 12 3 35 35 H 1.09002 * 109.46777 * 60.00353 * 14 12 3 36 36 H 1.08004 * 120.12078 * 359.54107 * 17 16 15 37 37 H 1.08002 * 119.89921 * 179.72541 * 18 17 16 38 38 H 1.08004 * 119.87173 * 180.02562 * 19 18 17 39 39 H 1.07996 * 120.06519 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.46852 * 180.16001 * 25 23 22 41 41 H 1.09001 * 109.46718 * 300.15751 * 25 23 22 42 42 H 1.08997 * 109.47300 * 60.15710 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2200 2.0370 1.1869 5 1 1.4891 1.9588 1.9781 6 6 3.3649 2.8023 1.3720 7 7 3.3992 3.7156 2.3163 8 14 4.8553 2.5330 0.2785 9 1 4.8118 3.4844 -0.8608 10 1 6.0941 2.7596 1.0655 11 1 4.8449 1.1410 -0.2383 12 6 2.2693 2.0073 -1.1669 13 8 2.6741 3.1506 -1.1669 14 6 2.0481 1.2862 -2.4716 15 7 2.3910 2.1746 -3.5848 16 6 1.4177 3.0047 -4.1589 17 6 0.2225 3.2518 -3.5013 18 6 -0.7233 4.0767 -4.0821 19 6 -0.4775 4.6585 -5.3122 20 6 0.7152 4.4192 -5.9705 21 6 1.6665 3.5948 -5.3955 22 8 2.8443 3.3482 -6.0289 23 6 3.9917 3.1508 -5.1986 24 1 4.8023 2.7305 -5.7938 25 6 4.4330 4.4939 -4.6134 26 6 3.6485 2.2027 -4.0775 27 8 4.4981 1.4675 -3.6204 28 1 -0.3633 0.5930 -0.8393 29 1 -0.3633 0.4303 0.9332 30 1 -0.3633 -1.0234 -0.0940 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 4.1987 4.2496 2.4457 34 1 2.6796 0.3985 -2.5077 35 1 1.0018 0.9912 -2.5508 36 1 0.0288 2.7984 -2.5404 37 1 -1.6568 4.2670 -3.5734 38 1 -1.2197 5.3022 -5.7607 39 1 0.9040 4.8756 -6.9309 40 1 5.3093 4.3449 -3.9825 41 1 4.6810 5.1793 -5.4238 42 1 3.6232 4.9141 -4.0171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:48 Heat of formation + Delta-G solvation = -73.078620 kcal Electronic energy + Delta-G solvation = -28509.130125 eV Core-core repulsion = 24647.782473 eV Total energy + Delta-G solvation = -3861.347652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.87980 -40.87649 -39.98025 -38.69423 -37.04599 -36.51189 -34.51864 -33.11877 -31.35216 -31.33402 -31.08511 -29.42593 -26.71326 -25.32766 -24.61708 -24.07921 -23.35273 -21.45056 -20.37106 -20.23245 -19.33517 -18.49197 -17.83162 -17.66984 -17.08167 -16.81396 -16.67020 -16.42232 -15.99594 -15.62795 -15.41662 -15.22964 -15.09937 -14.78657 -14.74214 -14.31546 -14.14632 -13.97012 -13.84267 -13.60131 -13.51093 -13.26558 -12.98373 -12.91966 -12.65241 -12.33519 -12.25721 -12.19973 -12.13086 -11.91049 -11.76098 -11.14577 -10.88133 -10.50455 -9.68520 -9.62929 -8.93094 -8.53078 -6.26425 0.04730 0.27876 1.01431 1.08082 1.23686 1.36758 1.42104 1.79164 2.11519 2.28900 2.58321 2.76350 2.78994 3.00130 3.57692 3.60091 3.71453 3.73764 3.91244 3.97213 3.99943 4.19477 4.23814 4.30333 4.41528 4.46711 4.47228 4.57203 4.62955 4.67584 4.87514 4.94592 4.98798 5.04770 5.22389 5.27769 5.39388 5.51951 5.62721 5.66214 5.79023 5.80936 6.23794 6.46639 6.66941 6.81824 7.23261 7.75755 8.55687 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.006181 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.204950 B = 4529.047933 C = 5290.110257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.085 3.915 3 N -0.474 5.474 4 C -0.336 4.336 5 H 0.078 0.922 6 C 0.055 3.945 7 N -0.902 5.902 8 Si 0.954 3.046 9 H -0.289 1.289 10 H -0.302 1.302 11 H -0.278 1.278 12 C 0.431 3.569 13 O -0.577 6.577 14 C 0.098 3.902 15 N -0.534 5.534 16 C 0.079 3.921 17 C -0.132 4.132 18 C -0.108 4.108 19 C -0.102 4.102 20 C -0.105 4.105 21 C 0.058 3.942 22 O -0.295 6.295 23 C 0.089 3.911 24 H 0.178 0.822 25 C -0.169 4.169 26 C 0.481 3.519 27 O -0.550 6.550 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.272 0.728 34 H 0.112 0.888 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.154 0.846 38 H 0.172 0.828 39 H 0.166 0.834 40 H 0.066 0.934 41 H 0.120 0.880 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 -2.554 -19.373 21.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.037 4.037 3 N -0.197 5.197 4 C -0.463 4.463 5 H 0.096 0.904 6 C -0.150 4.150 7 N -0.540 5.540 8 Si 0.786 3.214 9 H -0.216 1.216 10 H -0.231 1.231 11 H -0.203 1.203 12 C 0.220 3.780 13 O -0.461 6.461 14 C -0.027 4.027 15 N -0.256 5.256 16 C -0.014 4.014 17 C -0.152 4.152 18 C -0.127 4.127 19 C -0.120 4.120 20 C -0.124 4.124 21 C 0.012 3.988 22 O -0.210 6.210 23 C 0.030 3.970 24 H 0.195 0.805 25 C -0.227 4.227 26 C 0.271 3.729 27 O -0.428 6.428 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.160 0.840 36 H 0.134 0.866 37 H 0.172 0.828 38 H 0.190 0.810 39 H 0.183 0.817 40 H 0.085 0.915 41 H 0.139 0.861 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.859 -2.350 -19.162 20.844 hybrid contribution 1.229 -0.095 0.935 1.547 sum -6.630 -2.445 -18.227 19.549 Atomic orbital electron populations 1.22066 0.93963 1.03339 1.01763 1.21976 0.96307 0.82115 1.03317 1.43911 1.59655 1.12358 1.03802 1.18715 1.05218 1.29453 0.92891 0.90439 1.25738 0.99993 0.93783 0.95477 1.69813 1.29661 1.19733 1.34803 0.85715 0.78745 0.78312 0.78642 1.21628 1.23122 1.20294 1.21380 0.82521 0.87436 0.86628 1.90533 1.48617 1.20013 1.86910 1.21610 1.05207 0.92764 0.83128 1.45367 1.09125 1.39354 1.31801 1.18436 0.91413 0.97056 0.94537 1.20879 0.93198 1.01597 0.99572 1.21340 0.99380 0.95784 0.96185 1.21427 0.96782 0.99517 0.94267 1.20902 0.92983 0.96144 1.02323 1.18869 0.88680 0.99759 0.91524 1.86245 1.14133 1.87581 1.33047 1.22959 0.89156 0.95058 0.89803 0.80544 1.22284 1.01865 0.95561 1.02959 1.22284 0.81447 0.84230 0.84961 1.90708 1.47480 1.42565 1.62034 0.92704 0.93756 0.88449 0.90299 0.89724 0.91843 0.86979 0.84038 0.86595 0.82797 0.81013 0.81686 0.91546 0.86103 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 10.24 71.98 0.74 -3.38 16 2 C 0.09 2.90 5.93 86.38 0.51 3.41 16 3 N -0.47 -22.49 2.14 -635.54 -1.36 -23.85 16 4 C -0.34 -19.25 9.68 84.04 0.81 -18.44 16 5 H 0.08 4.64 8.06 -2.91 -0.02 4.62 16 6 C 0.06 3.39 4.85 84.93 0.41 3.80 16 7 N -0.90 -57.71 13.96 21.66 0.30 -57.41 16 8 Si 0.95 54.97 24.88 68.60 1.71 56.67 16 9 H -0.29 -17.92 6.33 99.48 0.63 -17.29 16 10 H -0.30 -16.81 7.11 99.48 0.71 -16.11 16 11 H -0.28 -15.65 7.11 99.48 0.71 -14.95 16 12 C 0.43 20.64 5.53 87.66 0.48 21.13 16 13 O -0.58 -33.03 12.06 -3.06 -0.04 -33.06 16 14 C 0.10 3.63 3.79 85.63 0.32 3.96 16 15 N -0.53 -19.99 2.21 -634.33 -1.40 -21.39 16 16 C 0.08 2.56 6.38 38.14 0.24 2.80 16 17 C -0.13 -3.89 9.14 22.38 0.20 -3.68 16 18 C -0.11 -2.32 10.04 22.29 0.22 -2.10 16 19 C -0.10 -1.73 10.04 22.30 0.22 -1.50 16 20 C -0.10 -2.08 10.00 22.33 0.22 -1.86 16 21 C 0.06 1.58 5.84 22.56 0.13 1.71 16 22 O -0.30 -7.92 10.18 -93.36 -0.95 -8.87 16 23 C 0.09 2.59 3.81 29.88 0.11 2.70 16 24 H 0.18 3.96 8.14 -2.39 -0.02 3.94 16 25 C -0.17 -4.88 9.30 71.98 0.67 -4.21 16 26 C 0.48 18.57 6.93 87.63 0.61 19.18 16 27 O -0.55 -24.73 16.74 -3.07 -0.05 -24.78 16 28 H 0.05 1.40 7.48 -2.39 -0.02 1.39 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 2.69 8.05 -2.39 -0.02 2.67 16 32 H 0.08 2.40 6.39 -2.39 -0.02 2.39 16 33 H 0.27 16.57 8.31 -92.71 -0.77 15.80 16 34 H 0.11 4.04 6.71 -2.39 -0.02 4.02 16 35 H 0.14 4.06 6.36 -2.39 -0.02 4.05 16 36 H 0.12 3.70 6.48 -2.91 -0.02 3.68 16 37 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.04 1.49 7.81 -2.39 -0.02 1.47 16 Total: -1.00 -84.68 344.72 5.09 -79.58 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.96 Total: 9.57 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 5.92 Total: 23.53 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -2.46 Total: -102.65 kcal Atomic # 8 Polarization: -65.68 SS G_CDS: -1.04 Total: -66.71 kcal Atomic # 14 Polarization: 54.97 SS G_CDS: 1.71 Total: 56.67 kcal Total: -84.68 5.09 -79.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.504 kcal (2) G-P(sol) polarization free energy of solvation -84.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds