Wall clock time and date at job start Tue Mar 31 2020 13:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.46807 * 2 1 4 4 C 1.37101 * 119.99624 * 264.74593 * 3 2 1 5 5 H 1.07996 * 119.99754 * 146.16488 * 4 3 2 6 6 C 1.38954 * 120.00425 * 326.16537 * 4 3 2 7 7 N 1.31414 * 119.99719 * 337.69143 * 6 4 3 8 8 Si 1.86794 * 120.00144 * 157.68407 * 6 4 3 9 9 H 1.48502 * 109.46930 * 90.00467 * 8 6 4 10 10 H 1.48501 * 109.47432 * 210.00309 * 8 6 4 11 11 H 1.48501 * 109.47342 * 330.00651 * 8 6 4 12 12 C 1.34772 * 120.00281 * 84.75184 * 3 2 1 13 13 O 1.21294 * 120.00136 * 179.97438 * 12 3 2 14 14 C 1.50700 * 119.99942 * 359.97438 * 12 3 2 15 15 C 1.52998 * 109.47187 * 180.02562 * 14 12 3 16 16 N 1.46496 * 109.47286 * 180.02562 * 15 14 12 17 17 C 1.40210 * 120.50775 * 89.99897 * 16 15 14 18 18 C 1.38500 * 120.74129 * 15.16797 * 17 16 15 19 19 C 1.38294 * 119.81256 * 179.78910 * 18 17 16 20 20 C 1.38282 * 120.19804 * 0.51317 * 19 18 17 21 21 C 1.38310 * 120.26031 * 359.73731 * 20 19 18 22 22 C 1.38396 * 119.87371 * 359.97438 * 21 20 19 23 23 O 1.35983 * 120.66734 * 180.02562 * 22 21 20 24 24 C 1.42998 * 116.71474 * 147.15463 * 23 22 21 25 25 C 1.35091 * 120.50757 * 269.98063 * 16 15 14 26 26 O 1.21298 * 120.12997 * 1.71071 * 25 16 15 27 27 H 1.08997 * 109.46893 * 300.00136 * 1 2 3 28 28 H 1.08996 * 109.47132 * 60.00440 * 1 2 3 29 29 H 1.09001 * 109.46529 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46893 * 239.99864 * 2 1 3 31 31 H 1.08996 * 109.47132 * 119.99560 * 2 1 3 32 32 H 0.97001 * 119.99927 * 179.97438 * 7 6 4 33 33 H 1.09003 * 109.46962 * 59.99892 * 14 12 3 34 34 H 1.08998 * 109.47038 * 300.00471 * 14 12 3 35 35 H 1.08998 * 109.47012 * 60.00147 * 15 14 12 36 36 H 1.08998 * 109.47333 * 300.00066 * 15 14 12 37 37 H 1.07997 * 120.09448 * 0.27210 * 18 17 16 38 38 H 1.08000 * 119.90330 * 180.27579 * 19 18 17 39 39 H 1.07998 * 119.86820 * 179.75521 * 20 19 18 40 40 H 1.07998 * 120.06763 * 179.97438 * 21 20 19 41 41 H 1.08994 * 109.44795 * 166.44572 * 24 23 22 42 42 H 1.08997 * 109.44847 * 286.39070 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3493 1.9913 -1.1824 5 1 2.1814 3.0506 -1.3090 6 6 2.9007 1.2466 -2.2179 7 7 3.5052 0.1088 -1.9594 8 14 2.7826 1.8629 -3.9773 9 1 3.9648 2.7066 -4.2866 10 1 2.7443 0.7048 -4.9060 11 1 1.5447 2.6674 -4.1380 12 6 2.1423 2.0522 1.1622 13 8 2.5470 3.1957 1.1622 14 6 1.7780 1.3818 2.4618 15 6 2.0086 2.3549 3.6198 16 7 1.6552 1.7030 4.8832 17 6 2.6177 0.9857 5.6077 18 6 3.9666 1.1297 5.3284 19 6 4.8998 0.4161 6.0580 20 6 4.4893 -0.4474 7.0570 21 6 3.1434 -0.5994 7.3372 22 6 2.2039 0.1158 6.6153 23 8 0.8766 -0.0209 6.8776 24 6 0.0613 1.1388 6.6893 25 6 0.3969 1.7841 5.3682 26 8 -0.4597 2.3732 4.7434 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.8898 -0.4112 -2.6823 33 1 2.3994 0.4971 2.6009 34 1 0.7286 1.0885 2.4377 35 1 1.3869 3.2393 3.4805 36 1 3.0580 2.6486 3.6441 37 1 4.2891 1.8033 4.5482 38 1 5.9523 0.5307 5.8444 39 1 5.2224 -1.0050 7.6208 40 1 2.8262 -1.2750 8.1178 41 1 -0.9892 0.8485 6.6946 42 1 0.2462 1.8473 7.4967 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068241421.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:20 Heat of formation + Delta-G solvation = -61.422803 kcal Electronic energy + Delta-G solvation = -27054.821577 eV Core-core repulsion = 23193.979359 eV Total energy + Delta-G solvation = -3860.842218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63572 -39.03561 -38.60076 -37.70839 -35.90051 -34.98461 -32.22594 -31.25237 -30.77128 -29.90278 -29.45212 -27.80795 -25.47161 -24.04588 -23.37702 -22.33362 -21.79124 -19.59107 -19.22769 -18.77708 -17.40228 -17.05725 -16.78753 -16.22861 -15.57625 -15.42042 -15.23060 -14.85164 -14.65568 -14.47096 -14.31560 -14.06233 -13.92939 -13.41589 -13.10916 -12.94263 -12.76602 -12.40067 -12.24777 -11.99594 -11.71035 -11.60738 -11.43221 -11.30813 -11.07884 -10.94746 -10.78677 -10.45579 -10.36268 -10.27728 -10.05821 -9.97944 -8.95953 -8.83112 -8.46129 -7.92934 -7.51005 -6.34970 -3.95461 0.93468 1.11057 2.22972 2.45063 3.11781 3.16040 3.25204 3.31443 3.55145 3.84320 3.87963 4.14895 4.50596 4.70054 4.78659 4.81823 4.91775 5.01302 5.05570 5.12019 5.26813 5.35014 5.41095 5.49968 5.70593 5.80447 5.86586 5.96097 6.04074 6.07650 6.22333 6.27396 6.33131 6.37073 6.41505 6.48190 6.56623 6.82144 6.89565 7.23077 7.26511 7.58300 7.68033 8.22226 8.48683 9.16195 9.40049 9.98706 10.68730 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018174 B = 0.003574 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.276865 B = 7832.659248 C = 8447.481178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.095 3.905 3 N -0.436 5.436 4 C -0.308 4.308 5 H 0.092 0.908 6 C 0.036 3.964 7 N -0.869 5.869 8 Si 0.917 3.083 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.461 3.539 13 O -0.587 6.587 14 C -0.147 4.147 15 C 0.127 3.873 16 N -0.549 5.549 17 C 0.104 3.896 18 C -0.122 4.122 19 C -0.107 4.107 20 C -0.117 4.117 21 C -0.110 4.110 22 C 0.071 3.929 23 O -0.304 6.304 24 C 0.053 3.947 25 C 0.483 3.517 26 O -0.503 6.503 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.114 0.886 31 H 0.046 0.954 32 H 0.268 0.732 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.936 -4.601 18.410 18.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.029 4.029 3 N -0.155 5.155 4 C -0.435 4.435 5 H 0.110 0.890 6 C -0.168 4.168 7 N -0.507 5.507 8 Si 0.743 3.257 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.194 1.194 12 C 0.249 3.751 13 O -0.472 6.472 14 C -0.188 4.188 15 C 0.007 3.993 16 N -0.273 5.273 17 C 0.009 3.991 18 C -0.143 4.143 19 C -0.126 4.126 20 C -0.136 4.136 21 C -0.129 4.129 22 C 0.025 3.975 23 O -0.218 6.218 24 C -0.025 4.025 25 C 0.270 3.730 26 O -0.378 6.378 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.132 0.868 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.298 -3.980 17.938 18.420 hybrid contribution -0.020 0.179 -1.045 1.060 sum -1.318 -3.802 16.893 17.365 Atomic orbital electron populations 1.22204 0.98165 1.00361 1.01556 1.21604 0.91775 0.85446 1.04071 1.43508 1.55245 1.11845 1.04870 1.19462 1.39755 0.95510 0.88800 0.88982 1.25326 0.94486 0.96456 1.00535 1.69924 1.32571 1.15279 1.32951 0.86090 0.79091 0.78376 0.82100 1.20265 1.20783 1.19386 1.19992 0.82702 0.87892 0.84535 1.90517 1.51045 1.18679 1.86914 1.21899 1.03138 0.99535 0.94239 1.21498 1.03007 0.95759 0.79086 1.45922 1.08850 1.50006 1.22523 1.18180 0.90287 0.96289 0.94372 1.20882 0.90053 1.01625 1.01705 1.21038 0.99692 0.96316 0.95550 1.20974 0.94768 0.99308 0.98511 1.20485 0.91362 1.01388 0.99632 1.18621 0.83598 0.99081 0.96215 1.86210 1.15715 1.34409 1.85516 1.23202 0.97353 0.87910 0.94069 1.21542 0.81972 0.80800 0.88640 1.90801 1.46055 1.41555 1.59340 0.93938 0.92371 0.93088 0.86809 0.93535 0.92213 0.89984 0.89968 0.88290 0.88794 0.84355 0.85022 0.85044 0.84588 0.83891 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 10.15 37.16 0.38 -2.78 16 2 C 0.10 2.13 5.43 -4.04 -0.02 2.10 16 3 N -0.44 -11.21 2.56 -114.81 -0.29 -11.51 16 4 C -0.31 -8.60 8.98 -14.93 -0.13 -8.73 16 5 H 0.09 2.70 7.70 -52.49 -0.40 2.29 16 6 C 0.04 0.95 4.92 -17.47 -0.09 0.86 16 7 N -0.87 -23.32 11.33 55.50 0.63 -22.69 16 8 Si 0.92 20.62 29.61 -169.99 -5.03 15.59 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 C 0.46 11.39 7.59 -10.99 -0.08 11.30 16 13 O -0.59 -16.21 15.81 5.55 0.09 -16.13 16 14 C -0.15 -2.86 4.63 -27.88 -0.13 -2.99 16 15 C 0.13 2.22 4.49 -4.04 -0.02 2.20 16 16 N -0.55 -8.28 2.72 -113.20 -0.31 -8.59 16 17 C 0.10 1.38 6.39 -83.49 -0.53 0.85 16 18 C -0.12 -1.49 9.36 -39.46 -0.37 -1.86 16 19 C -0.11 -1.06 10.04 -39.54 -0.40 -1.45 16 20 C -0.12 -1.02 10.04 -39.54 -0.40 -1.41 16 21 C -0.11 -1.06 10.00 -39.50 -0.39 -1.46 16 22 C 0.07 0.85 6.44 -39.09 -0.25 0.60 16 23 O -0.30 -3.55 10.45 -19.69 -0.21 -3.76 16 24 C 0.05 0.55 7.17 36.06 0.26 0.80 16 25 C 0.48 7.11 7.67 -10.79 -0.08 7.03 16 26 O -0.50 -9.04 16.77 5.54 0.09 -8.94 16 27 H 0.04 0.79 6.59 -51.93 -0.34 0.45 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.11 2.78 5.34 -51.93 -0.28 2.50 16 31 H 0.05 0.96 6.66 -51.93 -0.35 0.61 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.08 1.53 7.41 -51.93 -0.38 1.14 16 34 H 0.08 1.60 6.53 -51.93 -0.34 1.26 16 35 H 0.10 1.90 7.45 -51.93 -0.39 1.51 16 36 H 0.09 1.57 5.92 -51.93 -0.31 1.27 16 37 H 0.14 1.73 6.12 -52.49 -0.32 1.41 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -33.05 348.63 -7.24 -40.29 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.20 Total: 5.41 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -2.26 Total: 5.07 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.03 Total: -42.79 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.03 Total: -28.83 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.05 -7.24 -40.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241421.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.131 kcal (2) G-P(sol) polarization free energy of solvation -33.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds