Wall clock time and date at job start Tue Mar 31 2020 13:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99774 * 2 1 4 4 C 1.38752 * 120.05508 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94201 * 179.97438 * 4 3 2 6 6 C 1.38284 * 120.05969 * 359.74078 * 5 4 3 7 7 C 1.38252 * 120.10758 * 0.51388 * 6 5 4 8 8 C 1.50698 * 119.97056 * 179.76824 * 7 6 5 9 9 O 1.42902 * 109.47195 * 269.72126 * 8 7 6 10 10 C 1.42899 * 114.00159 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47161 * 329.99963 * 10 9 8 12 12 C 1.53000 * 109.47094 * 89.99976 * 10 9 8 13 13 C 1.50694 * 109.46922 * 210.00024 * 10 9 8 14 14 O 1.21297 * 120.00439 * 353.52454 * 13 10 9 15 15 N 1.34776 * 120.00026 * 173.52726 * 13 10 9 16 16 C 1.37099 * 120.00104 * 4.14249 * 15 13 10 17 17 H 1.08007 * 119.99601 * 356.21757 * 16 15 13 18 18 C 1.38949 * 120.00508 * 176.21520 * 16 15 13 19 19 N 1.31409 * 119.99714 * 332.10470 * 18 16 15 20 20 Si 1.86794 * 120.00131 * 152.10250 * 18 16 15 21 21 H 1.48501 * 109.47051 * 60.00422 * 20 18 16 22 22 H 1.48499 * 109.47118 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47486 * 300.00109 * 20 18 16 24 24 C 1.46501 * 120.00157 * 184.13778 * 15 13 10 25 25 C 1.47193 * 109.47276 * 265.91910 * 24 15 13 26 26 N 9.16318 * 115.58808 * 47.89841 * 6 1 2 27 27 C 1.38166 * 120.05435 * 359.48859 * 7 6 5 28 28 H 1.09004 * 109.46617 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47038 * 299.99581 * 1 2 3 30 30 H 1.08995 * 109.47155 * 60.00236 * 1 2 3 31 31 H 1.07999 * 120.03065 * 359.94878 * 4 3 2 32 32 H 1.08000 * 119.97043 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.95038 * 180.28047 * 6 5 4 34 34 H 1.09000 * 109.47146 * 149.72179 * 8 7 6 35 35 H 1.09004 * 109.47155 * 29.72294 * 8 7 6 36 36 H 1.09004 * 109.46695 * 298.01565 * 12 10 9 37 37 H 1.08991 * 109.47245 * 58.02006 * 12 10 9 38 38 H 1.09004 * 109.46699 * 178.02200 * 12 10 9 39 39 H 0.97005 * 120.00069 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.47122 * 25.92303 * 24 15 13 41 41 H 1.09000 * 109.46632 * 145.92085 * 24 15 13 42 42 H 1.07996 * 120.02849 * 180.23799 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6759 0.0065 7 6 4.0559 2.5172 0.0007 8 6 5.5607 2.5983 0.0013 9 8 6.0369 2.6244 -1.3458 10 6 7.4595 2.7005 -1.4580 11 1 7.8635 3.2364 -0.5991 12 6 8.0442 1.2873 -1.4987 13 6 7.8250 3.4320 -2.7238 14 8 6.9604 3.7439 -3.5154 15 7 9.1126 3.7397 -2.9765 16 6 10.0990 3.3136 -2.1250 17 1 9.8396 2.7841 -1.2201 18 6 11.4324 3.5628 -2.4262 19 7 11.8116 3.6835 -3.6786 20 14 12.6858 3.7264 -1.0509 21 1 12.7250 2.4672 -0.2646 22 1 14.0268 3.9895 -1.6320 23 1 12.3021 4.8528 -0.1627 24 6 9.4582 4.5295 -4.1610 25 6 9.8030 3.6252 -5.2701 26 7 10.0685 2.9283 -6.1267 27 6 3.4311 1.2849 0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2127 2.3203 0.0001 32 1 1.3338 4.5113 0.0019 33 1 3.7921 4.6382 0.0115 34 1 5.9712 1.7291 0.5150 35 1 5.8754 3.5065 0.5156 36 1 7.8098 0.7702 -0.5681 37 1 7.6136 0.7399 -2.3370 38 1 9.1260 1.3451 -1.6196 39 1 12.7423 3.8579 -3.8889 40 1 8.6069 5.1471 -4.4470 41 1 10.3114 5.1690 -3.9350 42 1 4.0206 0.3800 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072059646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:00 Heat of formation + Delta-G solvation = -42.053463 kcal Electronic energy + Delta-G solvation = -26006.950822 eV Core-core repulsion = 22146.948522 eV Total energy + Delta-G solvation = -3860.002301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.23355 -39.25281 -37.97653 -36.83280 -35.43712 -34.39452 -32.24498 -31.75122 -30.78396 -30.22201 -27.53916 -27.33850 -25.92949 -25.10917 -22.88687 -22.54351 -21.18308 -19.39101 -18.29168 -17.99045 -16.60708 -16.45303 -16.27806 -16.06846 -15.90115 -15.56884 -14.83243 -14.80470 -14.42371 -14.24487 -13.81132 -13.71082 -13.33394 -12.92372 -12.87960 -12.62202 -12.51048 -12.15877 -11.94859 -11.92280 -11.73598 -11.40680 -11.31762 -11.24806 -11.17874 -11.16076 -10.95387 -10.64551 -10.55704 -10.34177 -10.18540 -9.36739 -9.30914 -8.97759 -8.43839 -8.26284 -8.23391 -6.66112 -4.08152 1.18734 1.41179 3.00192 3.09854 3.13128 3.14134 3.43063 3.60390 3.78987 4.02641 4.25615 4.30553 4.66409 4.72385 4.74906 4.89253 4.91880 4.96163 5.10159 5.22448 5.23090 5.33271 5.40123 5.47790 5.54419 5.62763 5.65621 5.79628 5.83311 5.97315 6.20143 6.24387 6.30436 6.36349 6.48698 6.58373 6.64864 6.67284 6.79094 7.21050 7.28346 7.36685 7.55390 8.10134 8.84311 8.98089 9.21793 9.62895 10.38174 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.002843 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.187639 B = 9844.893606 C =10340.983747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.119 3.881 4 C -0.206 4.206 5 C -0.085 4.085 6 C -0.132 4.132 7 C -0.041 4.041 8 C 0.099 3.901 9 O -0.353 6.353 10 C 0.090 3.910 11 H 0.080 0.920 12 C -0.178 4.178 13 C 0.466 3.534 14 O -0.579 6.579 15 N -0.440 5.440 16 C -0.357 4.357 17 H 0.115 0.885 18 C 0.044 3.956 19 N -0.855 5.855 20 Si 0.917 3.083 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.270 1.270 24 C 0.231 3.769 25 C 0.260 3.740 26 N -0.485 5.485 27 C -0.129 4.129 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.277 0.723 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.913 -0.397 12.561 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.075 3.925 4 C -0.225 4.225 5 C -0.103 4.103 6 C -0.150 4.150 7 C -0.042 4.042 8 C 0.022 3.978 9 O -0.271 6.271 10 C 0.030 3.970 11 H 0.098 0.902 12 C -0.235 4.235 13 C 0.255 3.745 14 O -0.462 6.462 15 N -0.162 5.162 16 C -0.483 4.483 17 H 0.132 0.868 18 C -0.163 4.163 19 N -0.492 5.492 20 Si 0.743 3.257 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.195 1.195 24 C 0.104 3.896 25 C -0.058 4.058 26 N -0.166 5.166 27 C -0.148 4.148 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.141 0.859 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.799 -1.432 10.621 18.272 hybrid contribution 0.716 0.321 1.193 1.427 sum -14.083 -1.111 11.814 18.415 Atomic orbital electron populations 1.23029 0.78613 1.03784 1.01250 1.86073 1.21195 1.27013 1.88929 1.18954 0.92222 0.84121 0.97236 1.21214 0.99819 0.92489 1.08980 1.20902 0.94512 0.96955 0.97933 1.21028 0.93668 0.98281 1.02010 1.19416 0.94603 0.92404 0.97734 1.21347 0.89788 1.00948 0.85735 1.88102 1.20606 1.94771 1.23643 1.21672 0.80935 0.96766 0.97660 0.90192 1.22402 1.04258 0.95236 1.01630 1.19823 0.82776 0.83360 0.88586 1.90595 1.48776 1.57440 1.49420 1.43633 1.04876 1.46775 1.20888 1.19754 0.85603 1.39656 1.03298 0.86795 1.25191 0.98025 0.96355 0.96694 1.69952 1.18698 1.43585 1.16936 0.86139 0.79191 0.79337 0.81013 1.19721 1.20891 1.19520 1.18674 1.01202 0.90023 0.79659 1.29117 0.90004 0.93952 0.92700 1.80828 1.12457 1.09275 1.14023 1.20314 0.91276 0.98338 1.04870 0.88369 0.92797 0.92672 0.85663 0.85682 0.85505 0.92407 0.92181 0.92908 0.92198 0.88202 0.91185 0.89170 0.85926 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.76 10.50 -19.42 -0.20 -3.97 16 3 C 0.12 1.52 6.69 -39.22 -0.26 1.26 16 4 C -0.21 -2.28 9.04 -39.43 -0.36 -2.64 16 5 C -0.08 -0.95 10.04 -39.61 -0.40 -1.34 16 6 C -0.13 -1.68 9.70 -39.56 -0.38 -2.06 16 7 C -0.04 -0.58 5.51 -104.64 -0.58 -1.15 16 8 C 0.10 1.40 5.87 36.00 0.21 1.62 16 9 O -0.35 -6.69 9.51 -55.06 -0.52 -7.21 16 10 C 0.09 1.71 2.31 -27.89 -0.06 1.65 16 11 H 0.08 1.35 7.33 -51.93 -0.38 0.97 16 12 C -0.18 -3.14 9.10 37.16 0.34 -2.80 16 13 C 0.47 10.71 7.07 -10.99 -0.08 10.63 16 14 O -0.58 -15.08 16.07 -14.28 -0.23 -15.31 16 15 N -0.44 -10.04 2.59 -117.94 -0.31 -10.35 16 16 C -0.36 -7.94 8.02 -14.93 -0.12 -8.06 16 17 H 0.11 2.33 4.93 -52.48 -0.26 2.07 16 18 C 0.04 0.99 4.90 -17.47 -0.09 0.90 16 19 N -0.86 -20.47 9.06 55.50 0.50 -19.97 16 20 Si 0.92 17.50 29.63 -169.99 -5.04 12.46 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 23 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 24 C 0.23 5.08 5.23 -6.83 -0.04 5.04 16 25 C 0.26 6.38 13.44 -20.77 -0.28 6.10 16 26 N -0.49 -12.65 18.54 42.14 0.78 -11.87 16 27 C -0.13 -1.77 9.64 -39.43 -0.38 -2.15 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 30 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.06 0.72 7.86 -51.93 -0.41 0.31 16 35 H 0.06 0.75 8.03 -51.93 -0.42 0.34 16 36 H 0.05 0.76 7.91 -51.93 -0.41 0.35 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.10 1.87 5.23 -51.93 -0.27 1.60 16 39 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 40 H 0.09 1.84 7.36 -51.93 -0.38 1.46 16 41 H 0.12 2.60 6.36 -51.93 -0.33 2.27 16 42 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -31.02 358.98 -6.32 -37.34 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.23 Total: 5.26 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: -1.48 Total: 8.20 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.98 Total: -42.18 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.96 Total: -26.49 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.04 Total: 12.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.02 -6.32 -37.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072059646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.718 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds