Wall clock time and date at job start Tue Mar 31 2020 12:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99774 * 2 1 4 4 C 1.38752 * 120.05508 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94201 * 179.97438 * 4 3 2 6 6 C 1.38284 * 120.05969 * 359.74078 * 5 4 3 7 7 C 1.38252 * 120.10758 * 0.51388 * 6 5 4 8 8 C 1.50698 * 119.97056 * 179.76824 * 7 6 5 9 9 O 1.42902 * 109.47195 * 269.72126 * 8 7 6 10 10 C 1.42899 * 114.00159 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47161 * 329.99963 * 10 9 8 12 12 C 1.53000 * 109.47094 * 89.99976 * 10 9 8 13 13 C 1.50694 * 109.46922 * 210.00024 * 10 9 8 14 14 O 1.21297 * 120.00439 * 353.52454 * 13 10 9 15 15 N 1.34776 * 120.00026 * 173.52726 * 13 10 9 16 16 C 1.37099 * 120.00104 * 4.14249 * 15 13 10 17 17 H 1.08007 * 119.99601 * 356.21757 * 16 15 13 18 18 C 1.38949 * 120.00508 * 176.21520 * 16 15 13 19 19 N 1.31409 * 119.99714 * 332.10470 * 18 16 15 20 20 Si 1.86794 * 120.00131 * 152.10250 * 18 16 15 21 21 H 1.48501 * 109.47051 * 60.00422 * 20 18 16 22 22 H 1.48499 * 109.47118 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47486 * 300.00109 * 20 18 16 24 24 C 1.46501 * 120.00157 * 184.13778 * 15 13 10 25 25 C 1.47193 * 109.47276 * 265.91910 * 24 15 13 26 26 N 9.16318 * 115.58808 * 47.89841 * 6 1 2 27 27 C 1.38166 * 120.05435 * 359.48859 * 7 6 5 28 28 H 1.09004 * 109.46617 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47038 * 299.99581 * 1 2 3 30 30 H 1.08995 * 109.47155 * 60.00236 * 1 2 3 31 31 H 1.07999 * 120.03065 * 359.94878 * 4 3 2 32 32 H 1.08000 * 119.97043 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.95038 * 180.28047 * 6 5 4 34 34 H 1.09000 * 109.47146 * 149.72179 * 8 7 6 35 35 H 1.09004 * 109.47155 * 29.72294 * 8 7 6 36 36 H 1.09004 * 109.46695 * 298.01565 * 12 10 9 37 37 H 1.08991 * 109.47245 * 58.02006 * 12 10 9 38 38 H 1.09004 * 109.46699 * 178.02200 * 12 10 9 39 39 H 0.97005 * 120.00069 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.47122 * 25.92303 * 24 15 13 41 41 H 1.09000 * 109.46632 * 145.92085 * 24 15 13 42 42 H 1.07996 * 120.02849 * 180.23799 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3018 3.6759 0.0065 7 6 4.0559 2.5172 0.0007 8 6 5.5607 2.5983 0.0013 9 8 6.0369 2.6244 -1.3458 10 6 7.4595 2.7005 -1.4580 11 1 7.8635 3.2364 -0.5991 12 6 8.0442 1.2873 -1.4987 13 6 7.8250 3.4320 -2.7238 14 8 6.9604 3.7439 -3.5154 15 7 9.1126 3.7397 -2.9765 16 6 10.0990 3.3136 -2.1250 17 1 9.8396 2.7841 -1.2201 18 6 11.4324 3.5628 -2.4262 19 7 11.8116 3.6835 -3.6786 20 14 12.6858 3.7264 -1.0509 21 1 12.7250 2.4672 -0.2646 22 1 14.0268 3.9895 -1.6320 23 1 12.3021 4.8528 -0.1627 24 6 9.4582 4.5295 -4.1610 25 6 9.8030 3.6252 -5.2701 26 7 10.0685 2.9283 -6.1267 27 6 3.4311 1.2849 0.0001 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2127 2.3203 0.0001 32 1 1.3338 4.5113 0.0019 33 1 3.7921 4.6382 0.0115 34 1 5.9712 1.7291 0.5150 35 1 5.8754 3.5065 0.5156 36 1 7.8098 0.7702 -0.5681 37 1 7.6136 0.7399 -2.3370 38 1 9.1260 1.3451 -1.6196 39 1 12.7423 3.8579 -3.8889 40 1 8.6069 5.1471 -4.4470 41 1 10.3114 5.1690 -3.9350 42 1 4.0206 0.3800 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072059646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:59 Heat of formation + Delta-G solvation = -59.362898 kcal Electronic energy + Delta-G solvation = -26007.701416 eV Core-core repulsion = 22146.948522 eV Total energy + Delta-G solvation = -3860.752894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.15359 -40.86744 -39.11889 -38.04763 -37.26776 -36.30502 -33.66461 -33.23018 -31.97802 -31.23389 -29.07716 -28.22212 -27.09017 -26.70557 -24.36328 -23.48235 -22.10462 -21.09407 -19.99114 -18.96721 -18.15329 -18.03116 -17.30890 -17.10477 -16.96535 -16.60818 -16.34097 -16.15887 -15.98962 -15.66101 -15.07721 -14.90321 -14.54388 -14.43239 -14.24382 -13.98862 -13.67220 -13.54418 -13.42764 -13.15489 -13.14158 -13.00317 -12.78643 -12.72741 -12.38288 -12.21520 -12.18140 -12.02459 -11.95043 -11.87900 -11.66759 -11.07384 -10.72619 -10.18316 -10.03118 -9.87676 -9.16372 -8.38868 -5.85990 0.24751 0.48912 1.45801 1.59029 1.66786 1.76846 1.99732 2.29366 2.33978 2.40022 2.54310 2.92968 3.02829 3.42610 3.69162 3.87079 3.89039 4.06652 4.11101 4.21089 4.26735 4.32038 4.37442 4.39572 4.41172 4.48923 4.59048 4.66132 4.74097 4.79620 4.85803 4.89353 4.98182 5.06016 5.30112 5.31384 5.46499 5.53380 5.62025 5.64618 5.79542 6.20740 6.40200 6.46468 7.02818 7.09345 7.46419 7.86886 8.65532 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.002843 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.187639 B = 9844.893606 C =10340.983747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.109 3.891 4 C -0.204 4.204 5 C -0.084 4.084 6 C -0.147 4.147 7 C -0.060 4.060 8 C 0.094 3.906 9 O -0.381 6.381 10 C 0.096 3.904 11 H 0.106 0.894 12 C -0.169 4.169 13 C 0.452 3.548 14 O -0.619 6.619 15 N -0.445 5.445 16 C -0.366 4.366 17 H 0.133 0.867 18 C 0.008 3.992 19 N -0.887 5.887 20 Si 0.985 3.015 21 H -0.266 1.266 22 H -0.295 1.295 23 H -0.259 1.259 24 C 0.230 3.770 25 C 0.269 3.731 26 N -0.519 5.519 27 C -0.152 4.152 28 H 0.117 0.883 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.134 0.866 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.037 0.963 38 H 0.089 0.911 39 H 0.275 0.725 40 H 0.103 0.897 41 H 0.132 0.868 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.872 -0.147 14.958 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.063 3.937 4 C -0.223 4.223 5 C -0.102 4.102 6 C -0.166 4.166 7 C -0.060 4.060 8 C 0.018 3.982 9 O -0.301 6.301 10 C 0.036 3.964 11 H 0.123 0.877 12 C -0.226 4.226 13 C 0.242 3.758 14 O -0.505 6.505 15 N -0.165 5.165 16 C -0.491 4.491 17 H 0.151 0.849 18 C -0.196 4.196 19 N -0.525 5.525 20 Si 0.809 3.191 21 H -0.191 1.191 22 H -0.221 1.221 23 H -0.184 1.184 24 C 0.103 3.897 25 C -0.048 4.048 26 N -0.201 5.201 27 C -0.170 4.170 28 H 0.135 0.865 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.172 0.828 32 H 0.172 0.828 33 H 0.152 0.848 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.121 0.879 41 H 0.149 0.851 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.768 -1.190 13.045 20.499 hybrid contribution 0.898 0.211 0.435 1.020 sum -14.869 -0.979 13.481 20.094 Atomic orbital electron populations 1.23348 0.76375 1.05543 1.02332 1.86046 1.23587 1.26836 1.88834 1.19132 0.92204 0.85118 0.97198 1.21560 1.01264 0.91810 1.07618 1.21277 0.94146 0.98219 0.96574 1.21267 0.94665 0.98232 1.02387 1.19511 0.94594 0.92979 0.98957 1.21588 0.90191 1.02559 0.83829 1.88066 1.20300 1.94942 1.26744 1.21600 0.81618 0.96958 0.96215 0.87670 1.22318 1.03075 0.94653 1.02601 1.20646 0.82337 0.83048 0.89737 1.90556 1.49799 1.59065 1.51097 1.43890 1.05275 1.46477 1.20839 1.20222 0.85577 1.39726 1.03618 0.84940 1.25978 0.99568 0.95693 0.98364 1.70042 1.18844 1.44855 1.18720 0.85096 0.76140 0.79615 0.78224 1.19115 1.22094 1.18381 1.18866 1.01981 0.89756 0.79094 1.29658 0.89038 0.93568 0.92572 1.80807 1.13759 1.10391 1.15119 1.20439 0.92219 0.98289 1.06086 0.86467 0.91232 0.91941 0.82834 0.82796 0.84838 0.90683 0.90507 0.89341 0.94413 0.89259 0.91501 0.87885 0.85082 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.66 10.50 -92.42 -0.97 -8.63 16 3 C 0.11 2.67 6.69 22.51 0.15 2.82 16 4 C -0.20 -4.08 9.04 22.37 0.20 -3.88 16 5 C -0.08 -1.70 10.04 22.25 0.22 -1.48 16 6 C -0.15 -3.59 9.70 22.28 0.22 -3.37 16 7 C -0.06 -1.65 5.51 -19.88 -0.11 -1.75 16 8 C 0.09 2.57 5.87 71.24 0.42 2.99 16 9 O -0.38 -14.25 9.51 -130.02 -1.24 -15.49 16 10 C 0.10 3.56 2.31 29.85 0.07 3.63 16 11 H 0.11 3.29 7.33 -2.39 -0.02 3.28 16 12 C -0.17 -5.76 9.10 71.98 0.66 -5.11 16 13 C 0.45 20.75 7.07 87.66 0.62 21.37 16 14 O -0.62 -32.74 16.07 15.88 0.26 -32.48 16 15 N -0.44 -20.13 2.59 -645.43 -1.67 -21.80 16 16 C -0.37 -15.80 8.02 84.04 0.67 -15.13 16 17 H 0.13 5.12 4.93 -2.91 -0.01 5.11 16 18 C 0.01 0.33 4.90 84.93 0.42 0.74 16 19 N -0.89 -42.29 9.06 21.66 0.20 -42.09 16 20 Si 0.99 34.68 29.63 68.60 2.03 36.71 16 21 H -0.27 -9.10 7.11 99.48 0.71 -8.39 16 22 H -0.29 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.26 -8.65 7.11 99.48 0.71 -7.95 16 24 C 0.23 10.15 5.23 84.57 0.44 10.59 16 25 C 0.27 13.38 13.44 89.44 1.20 14.59 16 26 N -0.52 -27.57 18.54 20.00 0.37 -27.20 16 27 C -0.15 -4.14 9.64 22.37 0.22 -3.92 16 28 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 30 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 31 H 0.15 2.08 6.30 -2.91 -0.02 2.06 16 32 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 33 H 0.13 2.95 8.06 -2.91 -0.02 2.92 16 34 H 0.08 1.74 7.86 -2.39 -0.02 1.72 16 35 H 0.08 1.79 8.03 -2.39 -0.02 1.77 16 36 H 0.09 2.35 7.91 -2.38 -0.02 2.33 16 37 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.09 3.23 5.23 -2.38 -0.01 3.22 16 39 H 0.27 12.76 8.31 -92.70 -0.77 11.99 16 40 H 0.10 4.25 7.36 -2.39 -0.02 4.23 16 41 H 0.13 5.56 6.36 -2.39 -0.02 5.55 16 42 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -67.30 358.98 6.53 -60.77 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 1.05 Total: 26.79 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 6.51 Total: 23.42 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -1.11 Total: -91.09 kcal Atomic # 8 Polarization: -54.64 SS G_CDS: -1.95 Total: -56.60 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -67.30 6.53 -60.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072059646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.405 kcal (2) G-P(sol) polarization free energy of solvation -67.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds