Wall clock time and date at job start Tue Mar 31 2020 13:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99772 * 2 1 4 4 C 1.38752 * 120.05607 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94015 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05814 * 359.73961 * 5 4 3 7 7 C 1.38247 * 120.10915 * 0.51763 * 6 5 4 8 8 C 1.50699 * 119.96749 * 179.76157 * 7 6 5 9 9 O 1.42894 * 109.47057 * 269.71962 * 8 7 6 10 10 C 1.42903 * 113.99761 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47614 * 29.99643 * 10 9 8 12 12 C 1.53007 * 109.46767 * 270.00007 * 10 9 8 13 13 C 1.50700 * 109.47117 * 150.00299 * 10 9 8 14 14 O 1.21290 * 119.99994 * 17.34436 * 13 10 9 15 15 N 1.34782 * 119.99951 * 197.34365 * 13 10 9 16 16 C 1.37096 * 120.00118 * 185.32219 * 15 13 10 17 17 H 1.07998 * 119.99574 * 16.58386 * 16 15 13 18 18 C 1.38946 * 119.99734 * 196.58226 * 16 15 13 19 19 N 1.31404 * 120.00245 * 21.12593 * 18 16 15 20 20 Si 1.86800 * 119.99601 * 201.12311 * 18 16 15 21 21 H 1.48498 * 109.47143 * 90.00168 * 20 18 16 22 22 H 1.48507 * 109.47163 * 209.99928 * 20 18 16 23 23 H 1.48501 * 109.47349 * 329.99879 * 20 18 16 24 24 C 1.46496 * 119.99730 * 5.32511 * 15 13 10 25 25 C 1.47207 * 109.47513 * 84.01146 * 24 15 13 26 26 N 8.05642 * 138.99779 * 1.87337 * 3 1 2 27 27 C 1.38161 * 120.05440 * 359.48194 * 7 6 5 28 28 H 1.09001 * 109.47447 * 300.00182 * 1 2 3 29 29 H 1.09007 * 109.46885 * 60.00114 * 1 2 3 30 30 H 1.09000 * 109.47477 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.03134 * 359.95493 * 4 3 2 32 32 H 1.08005 * 119.96663 * 180.02562 * 5 4 3 33 33 H 1.07996 * 119.94157 * 180.27738 * 6 5 4 34 34 H 1.09011 * 109.46587 * 149.72182 * 8 7 6 35 35 H 1.09004 * 109.47361 * 29.72647 * 8 7 6 36 36 H 1.09002 * 109.47112 * 297.76509 * 12 10 9 37 37 H 1.09001 * 109.46656 * 177.76668 * 12 10 9 38 38 H 1.08997 * 109.47289 * 57.76667 * 12 10 9 39 39 H 0.97005 * 120.00097 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.47279 * 204.01360 * 24 15 13 41 41 H 1.09001 * 109.47276 * 324.01084 * 24 15 13 42 42 H 1.08002 * 120.02650 * 180.23271 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0065 7 6 4.0559 2.5171 0.0006 8 6 5.5608 2.5983 0.0011 9 8 6.0368 2.6243 -1.3459 10 6 7.4594 2.7004 -1.4582 11 1 7.9185 2.2102 -0.5998 12 6 7.8899 4.1682 -1.4978 13 6 7.9008 2.0132 -2.7247 14 8 7.0969 1.7885 -3.6046 15 7 9.1890 1.6482 -2.8795 16 6 9.6140 1.1228 -4.0723 17 1 9.0116 1.2431 -4.9605 18 6 10.8198 0.4355 -4.1384 19 7 11.3467 -0.0734 -3.0474 20 14 11.6918 0.2350 -5.7781 21 1 12.6166 1.3774 -5.9899 22 1 12.4643 -1.0334 -5.7761 23 1 10.6879 0.2013 -6.8719 24 6 10.1350 1.8130 -1.7731 25 6 10.0408 0.6543 -0.8701 26 7 9.9690 -0.2385 -0.1728 27 6 3.4311 1.2849 0.0001 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 0.2128 2.3204 0.0002 32 1 1.3339 4.5114 0.0019 33 1 3.7921 4.6381 0.0114 34 1 5.9713 1.7289 0.5149 35 1 5.8755 3.5064 0.5154 36 1 7.4629 4.6485 -2.3782 37 1 8.9774 4.2266 -1.5434 38 1 7.5362 4.6749 -0.5999 39 1 12.1887 -0.5529 -3.0935 40 1 11.1482 1.8838 -2.1688 41 1 9.8956 2.7229 -1.2228 42 1 4.0206 0.3800 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072059647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:04 Heat of formation + Delta-G solvation = -44.279405 kcal Electronic energy + Delta-G solvation = -26125.085815 eV Core-core repulsion = 22264.986990 eV Total energy + Delta-G solvation = -3860.098825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.23247 -39.30414 -37.97460 -36.84930 -35.70325 -34.33198 -32.46355 -31.77179 -30.65507 -30.16258 -27.51825 -27.45620 -26.01005 -25.27258 -22.99784 -22.61448 -21.20156 -19.36582 -18.03531 -17.97299 -16.77184 -16.50305 -16.39493 -16.09671 -15.89070 -15.74046 -15.09967 -14.90468 -14.27351 -14.09211 -14.00841 -13.53977 -13.42218 -13.09126 -12.87297 -12.71156 -12.43207 -12.33308 -12.15550 -11.86880 -11.79248 -11.61895 -11.49148 -11.33151 -11.23242 -11.16827 -10.89348 -10.75178 -10.54726 -10.39707 -10.31118 -9.52957 -9.26053 -8.98091 -8.41833 -8.26173 -8.06205 -6.50397 -3.99592 1.17249 1.40233 3.09399 3.12641 3.22150 3.26169 3.40735 3.59794 3.75837 3.94001 4.03742 4.21861 4.66178 4.68242 4.84755 4.89140 4.92919 4.94675 5.04747 5.10562 5.17326 5.23699 5.26376 5.28144 5.38149 5.41827 5.53765 5.60944 5.66141 5.83362 5.96105 5.99332 6.06388 6.21113 6.33287 6.40869 6.50006 6.55430 6.67100 7.30340 7.33908 7.47404 7.90932 8.29357 8.69021 9.00019 9.18228 9.72921 10.55730 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.002949 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.409298 B = 9491.395350 C = 9749.327989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.122 3.878 4 C -0.206 4.206 5 C -0.086 4.086 6 C -0.134 4.134 7 C -0.042 4.042 8 C 0.097 3.903 9 O -0.346 6.346 10 C 0.073 3.927 11 H 0.070 0.930 12 C -0.169 4.169 13 C 0.460 3.540 14 O -0.549 6.549 15 N -0.443 5.443 16 C -0.310 4.310 17 H 0.109 0.891 18 C 0.031 3.969 19 N -0.879 5.879 20 Si 0.929 3.071 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.269 1.269 24 C 0.215 3.785 25 C 0.243 3.757 26 N -0.470 5.470 27 C -0.126 4.126 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.273 0.727 40 H 0.132 0.868 41 H 0.084 0.916 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.922 9.464 8.931 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.077 3.923 4 C -0.224 4.224 5 C -0.104 4.104 6 C -0.153 4.153 7 C -0.043 4.043 8 C 0.020 3.980 9 O -0.264 6.264 10 C 0.011 3.989 11 H 0.088 0.912 12 C -0.227 4.227 13 C 0.247 3.753 14 O -0.429 6.429 15 N -0.165 5.165 16 C -0.437 4.437 17 H 0.127 0.873 18 C -0.172 4.172 19 N -0.519 5.519 20 Si 0.756 3.244 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.193 1.193 24 C 0.088 3.912 25 C -0.076 4.076 26 N -0.150 5.150 27 C -0.145 4.145 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.150 0.850 41 H 0.101 0.899 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.325 7.710 9.368 18.021 hybrid contribution 0.556 0.088 -0.761 0.946 sum -12.769 7.798 8.608 17.261 Atomic orbital electron populations 1.23037 0.78588 1.03865 1.01194 1.86097 1.21213 1.26933 1.88799 1.18963 0.92191 0.84189 0.96929 1.21219 0.99847 0.92463 1.08908 1.20881 0.94461 0.96924 0.98140 1.20966 0.93677 0.98007 1.02609 1.19364 0.94382 0.92473 0.98053 1.21394 0.90108 1.00992 0.85518 1.88129 1.19672 1.94789 1.23842 1.21983 0.82369 0.96441 0.98070 0.91213 1.22262 1.02149 0.95207 1.03050 1.19824 0.82358 0.84506 0.88630 1.90573 1.51146 1.57731 1.43463 1.43580 1.05528 1.55743 1.11681 1.19755 1.04413 1.33126 0.86405 0.87297 1.25264 0.98013 0.94900 0.99057 1.69868 1.20279 1.33430 1.28289 0.85866 0.79281 0.77592 0.81697 1.20122 1.21117 1.19311 1.18905 0.98953 0.88211 0.85179 1.29344 0.91925 0.94677 0.91608 1.80867 1.09724 1.10193 1.14218 1.20376 0.91408 0.98523 1.04200 0.92805 0.92658 0.88312 0.85604 0.85694 0.85635 0.92283 0.92134 0.91013 0.90668 0.92051 0.91612 0.85001 0.89877 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.10 10.50 -19.43 -0.20 -4.31 16 3 C 0.12 1.66 6.69 -39.22 -0.26 1.40 16 4 C -0.21 -2.33 9.04 -39.43 -0.36 -2.68 16 5 C -0.09 -0.93 10.04 -39.60 -0.40 -1.33 16 6 C -0.13 -1.64 9.70 -39.56 -0.38 -2.03 16 7 C -0.04 -0.61 5.51 -104.65 -0.58 -1.19 16 8 C 0.10 1.40 5.87 36.01 0.21 1.62 16 9 O -0.35 -6.55 9.56 -54.52 -0.52 -7.07 16 10 C 0.07 1.32 2.30 -27.88 -0.06 1.26 16 11 H 0.07 1.18 6.27 -51.93 -0.33 0.85 16 12 C -0.17 -2.36 9.28 37.16 0.34 -2.01 16 13 C 0.46 10.81 6.83 -10.98 -0.07 10.74 16 14 O -0.55 -15.36 16.26 -13.74 -0.22 -15.58 16 15 N -0.44 -10.37 2.60 -117.93 -0.31 -10.68 16 16 C -0.31 -8.02 9.32 -14.94 -0.14 -8.16 16 17 H 0.11 2.99 7.41 -52.49 -0.39 2.60 16 18 C 0.03 0.76 4.89 -17.47 -0.09 0.68 16 19 N -0.88 -22.05 9.44 55.50 0.52 -21.52 16 20 Si 0.93 19.61 29.60 -169.99 -5.03 14.58 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.29 -6.12 7.11 56.52 0.40 -5.71 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 C 0.22 4.21 4.78 -6.83 -0.03 4.17 16 25 C 0.24 5.34 12.95 -20.79 -0.27 5.07 16 26 N -0.47 -11.14 18.53 42.12 0.78 -10.36 16 27 C -0.13 -1.90 9.64 -39.43 -0.38 -2.28 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 29 H 0.05 0.40 7.66 -51.92 -0.40 0.00 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 32 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.06 0.84 8.03 -51.92 -0.42 0.42 16 35 H 0.06 0.70 7.77 -51.93 -0.40 0.30 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.93 6.30 -51.93 -0.33 0.60 16 38 H 0.06 0.68 7.83 -51.93 -0.41 0.27 16 39 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 40 H 0.13 2.62 6.35 -51.93 -0.33 2.29 16 41 H 0.08 1.23 4.93 -51.93 -0.26 0.97 16 42 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -33.86 359.73 -6.27 -40.13 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -5.23 Total: 2.91 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -1.47 Total: 6.48 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 1.00 Total: -42.56 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.95 Total: -26.96 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.86 -6.27 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072059647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.153 kcal (2) G-P(sol) polarization free energy of solvation -33.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds