Wall clock time and date at job start Tue Mar 31 2020 13:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99772 * 2 1 4 4 C 1.38752 * 120.05607 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94015 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05814 * 359.73961 * 5 4 3 7 7 C 1.38247 * 120.10915 * 0.51763 * 6 5 4 8 8 C 1.50699 * 119.96749 * 179.76157 * 7 6 5 9 9 O 1.42894 * 109.47057 * 269.71962 * 8 7 6 10 10 C 1.42903 * 113.99761 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47614 * 29.99643 * 10 9 8 12 12 C 1.53007 * 109.46767 * 270.00007 * 10 9 8 13 13 C 1.50700 * 109.47117 * 150.00299 * 10 9 8 14 14 O 1.21290 * 119.99994 * 17.34436 * 13 10 9 15 15 N 1.34782 * 119.99951 * 197.34365 * 13 10 9 16 16 C 1.37096 * 120.00118 * 185.32219 * 15 13 10 17 17 H 1.07998 * 119.99574 * 16.58386 * 16 15 13 18 18 C 1.38946 * 119.99734 * 196.58226 * 16 15 13 19 19 N 1.31404 * 120.00245 * 21.12593 * 18 16 15 20 20 Si 1.86800 * 119.99601 * 201.12311 * 18 16 15 21 21 H 1.48498 * 109.47143 * 90.00168 * 20 18 16 22 22 H 1.48507 * 109.47163 * 209.99928 * 20 18 16 23 23 H 1.48501 * 109.47349 * 329.99879 * 20 18 16 24 24 C 1.46496 * 119.99730 * 5.32511 * 15 13 10 25 25 C 1.47207 * 109.47513 * 84.01146 * 24 15 13 26 26 N 8.05642 * 138.99779 * 1.87337 * 3 1 2 27 27 C 1.38161 * 120.05440 * 359.48194 * 7 6 5 28 28 H 1.09001 * 109.47447 * 300.00182 * 1 2 3 29 29 H 1.09007 * 109.46885 * 60.00114 * 1 2 3 30 30 H 1.09000 * 109.47477 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.03134 * 359.95493 * 4 3 2 32 32 H 1.08005 * 119.96663 * 180.02562 * 5 4 3 33 33 H 1.07996 * 119.94157 * 180.27738 * 6 5 4 34 34 H 1.09011 * 109.46587 * 149.72182 * 8 7 6 35 35 H 1.09004 * 109.47361 * 29.72647 * 8 7 6 36 36 H 1.09002 * 109.47112 * 297.76509 * 12 10 9 37 37 H 1.09001 * 109.46656 * 177.76668 * 12 10 9 38 38 H 1.08997 * 109.47289 * 57.76667 * 12 10 9 39 39 H 0.97005 * 120.00097 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.47279 * 204.01360 * 24 15 13 41 41 H 1.09001 * 109.47276 * 324.01084 * 24 15 13 42 42 H 1.08002 * 120.02650 * 180.23271 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0065 7 6 4.0559 2.5171 0.0006 8 6 5.5608 2.5983 0.0011 9 8 6.0368 2.6243 -1.3459 10 6 7.4594 2.7004 -1.4582 11 1 7.9185 2.2102 -0.5998 12 6 7.8899 4.1682 -1.4978 13 6 7.9008 2.0132 -2.7247 14 8 7.0969 1.7885 -3.6046 15 7 9.1890 1.6482 -2.8795 16 6 9.6140 1.1228 -4.0723 17 1 9.0116 1.2431 -4.9605 18 6 10.8198 0.4355 -4.1384 19 7 11.3467 -0.0734 -3.0474 20 14 11.6918 0.2350 -5.7781 21 1 12.6166 1.3774 -5.9899 22 1 12.4643 -1.0334 -5.7761 23 1 10.6879 0.2013 -6.8719 24 6 10.1350 1.8130 -1.7731 25 6 10.0408 0.6543 -0.8701 26 7 9.9690 -0.2385 -0.1728 27 6 3.4311 1.2849 0.0001 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 0.2128 2.3204 0.0002 32 1 1.3339 4.5114 0.0019 33 1 3.7921 4.6381 0.0114 34 1 5.9713 1.7289 0.5149 35 1 5.8755 3.5064 0.5154 36 1 7.4629 4.6485 -2.3782 37 1 8.9774 4.2266 -1.5434 38 1 7.5362 4.6749 -0.5999 39 1 12.1887 -0.5529 -3.0935 40 1 11.1482 1.8838 -2.1688 41 1 9.8956 2.7229 -1.2228 42 1 4.0206 0.3800 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072059647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:04 Heat of formation + Delta-G solvation = -65.388301 kcal Electronic energy + Delta-G solvation = -26126.001165 eV Core-core repulsion = 22264.986990 eV Total energy + Delta-G solvation = -3861.014175 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.20784 -40.90798 -39.15768 -38.07011 -37.51539 -36.20417 -34.05588 -33.10853 -31.77810 -31.23828 -29.19289 -28.25520 -27.22325 -26.85488 -24.49193 -23.54796 -22.15617 -21.02780 -19.82736 -19.06367 -18.30900 -18.05696 -17.45868 -17.28878 -16.96585 -16.70096 -16.64782 -16.26231 -15.88093 -15.52541 -15.30637 -14.82473 -14.60614 -14.58214 -14.17050 -13.92425 -13.88380 -13.55060 -13.37760 -13.26749 -13.16288 -13.06008 -12.91136 -12.70021 -12.53106 -12.35008 -12.19272 -12.14646 -12.04223 -11.97110 -11.72050 -11.15146 -10.85213 -10.21649 -9.96545 -9.92947 -9.20219 -8.41787 -5.98282 0.20019 0.45379 1.38636 1.48079 1.58045 1.72155 1.99810 2.19616 2.25635 2.34514 2.49774 2.89472 2.97381 3.33626 3.51468 3.74192 3.82757 3.88356 3.97700 4.07372 4.15096 4.23905 4.31022 4.33508 4.37293 4.44258 4.47067 4.53375 4.69530 4.76186 4.82303 4.86219 4.93794 4.99813 5.28285 5.32350 5.42966 5.47236 5.59207 5.78127 5.89688 6.17979 6.43092 6.43215 6.93518 7.09864 7.30647 7.88311 8.61768 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018196 B = 0.002949 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.409298 B = 9491.395350 C = 9749.327989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.345 6.345 3 C 0.107 3.893 4 C -0.202 4.202 5 C -0.081 4.081 6 C -0.139 4.139 7 C -0.062 4.062 8 C 0.094 3.906 9 O -0.379 6.379 10 C 0.080 3.920 11 H 0.083 0.917 12 C -0.162 4.162 13 C 0.446 3.554 14 O -0.609 6.609 15 N -0.450 5.450 16 C -0.342 4.342 17 H 0.080 0.920 18 C 0.007 3.993 19 N -0.892 5.892 20 Si 0.989 3.011 21 H -0.254 1.254 22 H -0.286 1.286 23 H -0.280 1.280 24 C 0.216 3.784 25 C 0.253 3.747 26 N -0.504 5.504 27 C -0.163 4.163 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.276 0.724 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.258 11.966 10.026 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.259 6.259 3 C 0.062 3.938 4 C -0.221 4.221 5 C -0.098 4.098 6 C -0.157 4.157 7 C -0.062 4.062 8 C 0.018 3.982 9 O -0.298 6.298 10 C 0.019 3.981 11 H 0.101 0.899 12 C -0.219 4.219 13 C 0.236 3.764 14 O -0.493 6.493 15 N -0.171 5.171 16 C -0.469 4.469 17 H 0.098 0.902 18 C -0.195 4.195 19 N -0.531 5.531 20 Si 0.814 3.186 21 H -0.179 1.179 22 H -0.212 1.212 23 H -0.205 1.205 24 C 0.089 3.911 25 C -0.065 4.065 26 N -0.185 5.185 27 C -0.182 4.182 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.174 0.826 32 H 0.180 0.820 33 H 0.167 0.833 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.638 10.223 10.506 20.022 hybrid contribution 0.553 -0.764 -1.094 1.444 sum -13.085 9.459 9.412 18.689 Atomic orbital electron populations 1.23360 0.76194 1.05524 1.02498 1.86058 1.23820 1.27180 1.88856 1.19142 0.91966 0.85355 0.97300 1.21592 1.01298 0.91733 1.07443 1.21360 0.94265 0.98102 0.96102 1.21293 0.94463 0.98044 1.01861 1.19502 0.94488 0.93012 0.99240 1.21611 0.90439 1.02416 0.83738 1.88088 1.19948 1.95112 1.26692 1.21954 0.82561 0.98626 0.94979 0.89895 1.22270 1.03328 0.91886 1.04425 1.20921 0.81814 0.83823 0.89874 1.90523 1.52731 1.60050 1.46001 1.43748 1.06387 1.55057 1.11915 1.19641 1.05171 1.35132 0.86979 0.90209 1.25893 0.97709 0.93874 1.02026 1.69945 1.20357 1.33171 1.29618 0.84986 0.78005 0.78011 0.77640 1.17882 1.21162 1.20547 1.19276 0.98225 0.89324 0.84228 1.29827 0.90887 0.94608 0.91131 1.80870 1.10863 1.11158 1.15582 1.20445 0.92559 0.98332 1.06820 0.90971 0.91705 0.86695 0.82622 0.81984 0.83321 0.93103 0.88404 0.92323 0.88735 0.88110 0.91361 0.84974 0.84391 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.34 -9.11 10.50 -92.44 -0.97 -10.08 16 3 C 0.11 2.96 6.69 22.51 0.15 3.11 16 4 C -0.20 -4.17 9.04 22.37 0.20 -3.97 16 5 C -0.08 -1.51 10.04 22.26 0.22 -1.29 16 6 C -0.14 -3.10 9.70 22.28 0.22 -2.88 16 7 C -0.06 -1.78 5.51 -19.88 -0.11 -1.89 16 8 C 0.09 2.68 5.87 71.24 0.42 3.10 16 9 O -0.38 -14.39 9.56 -130.54 -1.25 -15.64 16 10 C 0.08 2.83 2.30 29.85 0.07 2.90 16 11 H 0.08 2.67 6.27 -2.39 -0.01 2.66 16 12 C -0.16 -4.04 9.28 71.98 0.67 -3.37 16 13 C 0.45 21.45 6.83 87.66 0.60 22.05 16 14 O -0.61 -35.79 16.26 15.38 0.25 -35.54 16 15 N -0.45 -21.28 2.60 -645.42 -1.68 -22.96 16 16 C -0.34 -18.14 9.32 84.04 0.78 -17.36 16 17 H 0.08 4.62 7.41 -2.91 -0.02 4.60 16 18 C 0.01 0.35 4.89 84.93 0.42 0.77 16 19 N -0.89 -44.41 9.44 21.66 0.20 -44.21 16 20 Si 0.99 40.20 29.60 68.60 2.03 42.23 16 21 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 22 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 24 C 0.22 8.16 4.78 84.58 0.40 8.56 16 25 C 0.25 10.99 12.95 89.45 1.16 12.14 16 26 N -0.50 -23.86 18.53 20.00 0.37 -23.48 16 27 C -0.16 -5.16 9.64 22.37 0.22 -4.95 16 28 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 29 H 0.06 0.83 7.66 -2.38 -0.02 0.82 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.16 2.16 6.30 -2.91 -0.02 2.15 16 32 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.05 1.49 8.03 -2.38 -0.02 1.47 16 35 H 0.10 1.99 7.77 -2.39 -0.02 1.97 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 1.95 6.30 -2.39 -0.02 1.94 16 38 H 0.10 1.75 7.83 -2.39 -0.02 1.73 16 39 H 0.28 13.19 8.31 -92.70 -0.77 12.42 16 40 H 0.13 5.06 6.35 -2.39 -0.02 5.05 16 41 H 0.14 3.64 4.93 -2.39 -0.01 3.63 16 42 H 0.11 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -78.58 359.73 6.53 -72.04 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 1.05 Total: 19.35 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 6.52 Total: 18.29 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -1.10 Total: -90.65 kcal Atomic # 8 Polarization: -59.30 SS G_CDS: -1.97 Total: -61.27 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -78.58 6.53 -72.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072059647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.656 kcal (2) G-P(sol) polarization free energy of solvation -78.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds