Wall clock time and date at job start Tue Mar 31 2020 12:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.41116 * 2 1 4 4 C 1.55137 * 110.33982 * 122.43699 * 2 1 3 5 5 C 1.55152 * 101.48168 * 156.06131 * 4 2 1 6 6 C 1.54318 * 102.94740 * 324.32819 * 5 4 2 7 7 N 1.47027 * 107.27011 * 22.19948 * 6 5 4 8 8 C 1.34771 * 125.65159 * 181.02462 * 7 6 5 9 9 O 1.21367 * 120.00006 * 180.02562 * 8 7 6 10 10 C 1.49320 * 120.00024 * 0.02562 * 8 7 6 11 11 O 1.21390 * 119.99993 * 0.02562 * 10 8 7 12 12 N 1.34771 * 120.00038 * 180.02562 * 10 8 7 13 13 C 1.39745 * 119.99948 * 175.49902 * 12 10 8 14 14 C 1.38990 * 120.00641 * 35.14181 * 13 12 10 15 15 C 1.37969 * 119.99158 * 180.02562 * 14 13 12 16 16 C 1.38940 * 120.00659 * 0.02562 * 15 14 13 17 17 O 1.35753 * 119.99002 * 179.97438 * 16 15 14 18 18 C 1.34804 * 117.00556 * 5.35447 * 17 16 15 19 19 H 1.08000 * 119.99682 * 354.95808 * 18 17 16 20 20 C 1.38645 * 120.00301 * 174.68468 * 18 17 16 21 21 N 1.31564 * 119.99967 * 0.27888 * 20 18 17 22 22 Si 1.86799 * 120.00053 * 180.27236 * 20 18 17 23 23 H 1.48508 * 109.46803 * 90.00143 * 22 20 18 24 24 H 1.48501 * 109.47402 * 210.00227 * 22 20 18 25 25 H 1.48495 * 109.47302 * 330.00495 * 22 20 18 26 26 C 1.38934 * 120.01524 * 0.26059 * 16 15 14 27 27 C 1.37975 * 120.00550 * 359.44895 * 26 16 15 28 28 H 1.09005 * 109.47066 * 180.84344 * 1 2 3 29 29 H 1.08998 * 109.47598 * 300.84725 * 1 2 3 30 30 H 1.09002 * 109.46900 * 60.84657 * 1 2 3 31 31 H 1.08997 * 111.18973 * 37.95688 * 4 2 1 32 32 H 1.08999 * 110.90314 * 274.04190 * 4 2 1 33 33 H 1.09004 * 110.71514 * 205.96785 * 5 4 2 34 34 H 1.09001 * 110.87733 * 82.77141 * 5 4 2 35 35 H 1.08999 * 109.88775 * 262.78005 * 6 5 4 36 36 H 1.09001 * 109.88338 * 141.60599 * 6 5 4 37 37 H 0.97006 * 119.99952 * 355.49250 * 12 10 8 38 38 H 1.07994 * 120.00826 * 359.97438 * 14 13 12 39 39 H 1.07999 * 119.99824 * 179.97438 * 15 14 13 40 40 H 0.96997 * 119.99779 * 179.97438 * 21 20 18 41 41 H 1.07996 * 119.99806 * 179.72076 * 26 16 15 42 42 H 1.07996 * 120.00451 * 180.25184 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0215 0.0000 4 6 2.0692 -0.7802 1.2277 5 6 3.4796 -1.1972 0.7335 6 6 3.2525 -1.4726 -0.7678 7 7 2.0431 -0.7385 -1.1682 8 6 1.4973 -0.7366 -2.4004 9 8 0.4932 -0.0906 -2.6183 10 6 2.1279 -1.5291 -3.4976 11 8 3.1320 -2.1756 -3.2796 12 7 1.5824 -1.5268 -4.7300 13 6 2.2233 -2.1912 -5.7791 14 6 2.9138 -3.3725 -5.5349 15 6 3.5469 -4.0280 -6.5708 16 6 3.4946 -3.5071 -7.8578 17 8 4.1181 -4.1521 -8.8768 18 6 4.6747 -5.3471 -8.5952 19 1 4.6840 -5.7124 -7.5790 20 6 5.2302 -6.1097 -9.6112 21 7 5.2190 -5.6646 -10.8492 22 14 5.9947 -7.7691 -9.2221 23 1 4.9597 -8.8286 -9.3305 24 1 7.0905 -8.0473 -10.1850 25 1 6.5415 -7.7508 -7.8416 26 6 2.8095 -2.3232 -8.1011 27 6 2.1711 -1.6703 -7.0667 28 1 -0.3633 -1.0276 0.0151 29 1 -0.3634 0.5269 0.8822 30 1 -0.3633 0.5006 -0.8975 31 1 1.4548 -1.6553 1.4393 32 1 2.1371 -0.1319 2.1013 33 1 3.8161 -2.0993 1.2445 34 1 4.1953 -0.3870 0.8731 35 1 3.1090 -2.5407 -0.9313 36 1 4.1081 -1.1190 -1.3432 37 1 0.7448 -1.0639 -4.8887 38 1 2.9555 -3.7768 -4.5344 39 1 4.0838 -4.9457 -6.3812 40 1 5.6079 -6.1980 -11.5598 41 1 2.7728 -1.9162 -9.1008 42 1 1.6351 -0.7522 -7.2566 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076703341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:42 Heat of formation + Delta-G solvation = -55.026678 kcal Electronic energy + Delta-G solvation = -25906.937450 eV Core-core repulsion = 22046.372589 eV Total energy + Delta-G solvation = -3860.564861 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.06790 -39.64405 -38.59451 -37.68142 -36.58452 -34.07449 -32.22766 -32.12019 -31.65286 -30.26677 -28.34489 -26.16832 -25.59935 -24.87302 -22.76203 -22.24284 -21.54239 -20.69827 -19.57988 -18.21042 -17.77053 -17.31980 -17.00958 -16.53972 -16.16223 -15.47742 -14.84671 -14.56773 -14.44952 -14.26242 -14.04872 -13.75571 -13.63685 -13.59251 -13.49400 -12.95731 -12.84448 -12.62065 -12.41450 -12.12773 -11.86367 -11.78359 -11.60305 -11.51227 -11.40430 -11.11420 -11.04362 -10.91090 -10.73034 -10.45656 -9.78025 -9.48630 -9.18036 -9.00733 -8.74426 -8.26159 -7.01060 -6.48284 -4.05660 1.29212 2.10354 2.15274 2.34395 3.11352 3.13133 3.17977 3.23663 3.42967 3.94875 4.14582 4.20096 4.43819 4.49547 4.54931 4.86045 4.91593 5.04508 5.06039 5.22154 5.24183 5.35851 5.43988 5.55083 5.62951 5.64128 5.68245 5.74712 5.80844 5.85578 6.05142 6.11130 6.18596 6.24666 6.64356 6.75250 6.91397 6.96996 7.04639 7.24288 7.38042 7.38478 7.68911 7.73669 7.96671 8.11843 8.97286 9.65881 10.69407 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023511 B = 0.002572 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.624793 B =10884.787827 C =11844.808619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.131 3.869 3 H 0.081 0.919 4 C -0.130 4.130 5 C -0.136 4.136 6 C 0.105 3.895 7 N -0.590 5.590 8 C 0.526 3.474 9 O -0.522 6.522 10 C 0.497 3.503 11 O -0.505 6.505 12 N -0.625 5.625 13 C 0.023 3.977 14 C -0.060 4.060 15 C -0.222 4.222 16 C 0.150 3.850 17 O -0.173 6.173 18 C -0.391 4.391 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.178 4.178 27 C -0.085 4.085 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.413 0.587 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.271 0.729 41 H 0.123 0.877 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.502 9.337 21.915 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.029 3.971 3 H 0.099 0.901 4 C -0.168 4.168 5 C -0.174 4.174 6 C -0.017 4.017 7 N -0.325 5.325 8 C 0.310 3.690 9 O -0.399 6.399 10 C 0.278 3.722 11 O -0.381 6.381 12 N -0.270 5.270 13 C -0.069 4.069 14 C -0.080 4.080 15 C -0.242 4.242 16 C 0.095 3.905 17 O -0.076 6.076 18 C -0.467 4.467 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.198 4.198 27 C -0.105 4.105 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.250 0.750 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.081 0.919 41 H 0.141 0.859 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.219 9.208 21.411 24.122 hybrid contribution 0.067 -0.612 0.153 0.635 sum -6.151 8.596 21.564 24.015 Atomic orbital electron populations 1.22201 0.93541 1.02910 1.03869 1.22106 0.95543 0.95603 0.83834 0.90131 1.22921 0.96400 1.00676 0.96818 1.22723 0.97239 1.02742 0.94733 1.22219 0.87003 0.97644 0.94858 1.48346 1.28170 1.47525 1.08437 1.19838 0.84205 0.82424 0.82544 1.90694 1.24456 1.43100 1.81643 1.19966 0.84964 0.83226 0.84039 1.90757 1.24346 1.41354 1.81613 1.42830 1.25178 1.51854 1.07165 1.17240 1.06963 0.95902 0.86785 1.20831 0.95911 0.92237 0.99005 1.21088 1.07229 1.03594 0.92260 1.19443 0.90749 0.92137 0.88149 1.83966 1.60284 1.31628 1.31759 1.21356 1.36691 0.93004 0.95688 0.88928 1.25305 0.97207 0.99531 0.94455 1.70040 1.41990 1.37775 0.99719 0.85700 0.78718 0.80301 0.78677 1.19835 1.20231 1.19104 1.20002 1.03767 0.96785 0.99206 1.20394 1.00300 0.98775 0.91029 0.92500 0.91795 0.89352 0.90260 0.89635 0.89685 0.90431 0.90094 0.90143 0.75036 0.85690 0.85062 0.91946 0.85853 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 8.71 37.16 0.32 -1.12 16 2 C 0.13 1.11 3.78 -66.29 -0.25 0.86 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.13 -0.77 6.51 -24.46 -0.16 -0.93 16 5 C -0.14 -0.86 6.95 -24.90 -0.17 -1.03 16 6 C 0.11 1.02 5.49 -3.06 -0.02 1.00 16 7 N -0.59 -6.51 3.24 -163.46 -0.53 -7.04 16 8 C 0.53 7.05 7.69 -11.65 -0.09 6.96 16 9 O -0.52 -7.49 14.13 5.48 0.08 -7.41 16 10 C 0.50 7.50 7.69 -11.65 -0.09 7.41 16 11 O -0.51 -8.53 11.55 5.46 0.06 -8.46 16 12 N -0.62 -9.36 5.32 -10.27 -0.05 -9.42 16 13 C 0.02 0.42 6.30 -83.69 -0.53 -0.11 16 14 C -0.06 -1.18 8.69 -39.40 -0.34 -1.53 16 15 C -0.22 -4.90 9.16 -39.42 -0.36 -5.26 16 16 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 17 O -0.17 -4.89 9.75 0.11 0.00 -4.89 16 18 C -0.39 -10.85 9.48 30.88 0.29 -10.55 16 19 H 0.09 2.38 5.19 -52.49 -0.27 2.11 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.00 13.67 55.48 0.76 -24.24 16 22 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 26 C -0.18 -3.66 9.98 -39.42 -0.39 -4.06 16 27 C -0.08 -1.49 9.96 -39.40 -0.39 -1.88 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.97 5.89 -51.93 -0.31 0.66 16 31 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.86 7.58 -51.93 -0.39 0.47 16 36 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 37 H 0.41 5.25 8.30 -40.82 -0.34 4.92 16 38 H 0.13 2.38 6.22 -52.49 -0.33 2.05 16 39 H 0.13 2.90 5.63 -52.49 -0.30 2.61 16 40 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -31.83 348.91 -7.25 -39.08 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.27 Total: 7.69 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.53 Total: -5.94 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.17 Total: -40.70 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.14 Total: -20.76 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.83 -7.25 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076703341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.949 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds