Wall clock time and date at job start Tue Mar 31 2020 12:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.41116 * 2 1 4 4 C 1.55137 * 110.33982 * 122.43699 * 2 1 3 5 5 C 1.55152 * 101.48168 * 156.06131 * 4 2 1 6 6 C 1.54318 * 102.94740 * 324.32819 * 5 4 2 7 7 N 1.47027 * 107.27011 * 22.19948 * 6 5 4 8 8 C 1.34771 * 125.65159 * 181.02462 * 7 6 5 9 9 O 1.21367 * 120.00006 * 180.02562 * 8 7 6 10 10 C 1.49320 * 120.00024 * 0.02562 * 8 7 6 11 11 O 1.21390 * 119.99993 * 0.02562 * 10 8 7 12 12 N 1.34771 * 120.00038 * 180.02562 * 10 8 7 13 13 C 1.39745 * 119.99948 * 175.49902 * 12 10 8 14 14 C 1.38990 * 120.00641 * 35.14181 * 13 12 10 15 15 C 1.37969 * 119.99158 * 180.02562 * 14 13 12 16 16 C 1.38940 * 120.00659 * 0.02562 * 15 14 13 17 17 O 1.35753 * 119.99002 * 179.97438 * 16 15 14 18 18 C 1.34804 * 117.00556 * 5.35447 * 17 16 15 19 19 H 1.08000 * 119.99682 * 354.95808 * 18 17 16 20 20 C 1.38645 * 120.00301 * 174.68468 * 18 17 16 21 21 N 1.31564 * 119.99967 * 0.27888 * 20 18 17 22 22 Si 1.86799 * 120.00053 * 180.27236 * 20 18 17 23 23 H 1.48508 * 109.46803 * 90.00143 * 22 20 18 24 24 H 1.48501 * 109.47402 * 210.00227 * 22 20 18 25 25 H 1.48495 * 109.47302 * 330.00495 * 22 20 18 26 26 C 1.38934 * 120.01524 * 0.26059 * 16 15 14 27 27 C 1.37975 * 120.00550 * 359.44895 * 26 16 15 28 28 H 1.09005 * 109.47066 * 180.84344 * 1 2 3 29 29 H 1.08998 * 109.47598 * 300.84725 * 1 2 3 30 30 H 1.09002 * 109.46900 * 60.84657 * 1 2 3 31 31 H 1.08997 * 111.18973 * 37.95688 * 4 2 1 32 32 H 1.08999 * 110.90314 * 274.04190 * 4 2 1 33 33 H 1.09004 * 110.71514 * 205.96785 * 5 4 2 34 34 H 1.09001 * 110.87733 * 82.77141 * 5 4 2 35 35 H 1.08999 * 109.88775 * 262.78005 * 6 5 4 36 36 H 1.09001 * 109.88338 * 141.60599 * 6 5 4 37 37 H 0.97006 * 119.99952 * 355.49250 * 12 10 8 38 38 H 1.07994 * 120.00826 * 359.97438 * 14 13 12 39 39 H 1.07999 * 119.99824 * 179.97438 * 15 14 13 40 40 H 0.96997 * 119.99779 * 179.97438 * 21 20 18 41 41 H 1.07996 * 119.99806 * 179.72076 * 26 16 15 42 42 H 1.07996 * 120.00451 * 180.25184 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0215 0.0000 4 6 2.0692 -0.7802 1.2277 5 6 3.4796 -1.1972 0.7335 6 6 3.2525 -1.4726 -0.7678 7 7 2.0431 -0.7385 -1.1682 8 6 1.4973 -0.7366 -2.4004 9 8 0.4932 -0.0906 -2.6183 10 6 2.1279 -1.5291 -3.4976 11 8 3.1320 -2.1756 -3.2796 12 7 1.5824 -1.5268 -4.7300 13 6 2.2233 -2.1912 -5.7791 14 6 2.9138 -3.3725 -5.5349 15 6 3.5469 -4.0280 -6.5708 16 6 3.4946 -3.5071 -7.8578 17 8 4.1181 -4.1521 -8.8768 18 6 4.6747 -5.3471 -8.5952 19 1 4.6840 -5.7124 -7.5790 20 6 5.2302 -6.1097 -9.6112 21 7 5.2190 -5.6646 -10.8492 22 14 5.9947 -7.7691 -9.2221 23 1 4.9597 -8.8286 -9.3305 24 1 7.0905 -8.0473 -10.1850 25 1 6.5415 -7.7508 -7.8416 26 6 2.8095 -2.3232 -8.1011 27 6 2.1711 -1.6703 -7.0667 28 1 -0.3633 -1.0276 0.0151 29 1 -0.3634 0.5269 0.8822 30 1 -0.3633 0.5006 -0.8975 31 1 1.4548 -1.6553 1.4393 32 1 2.1371 -0.1319 2.1013 33 1 3.8161 -2.0993 1.2445 34 1 4.1953 -0.3870 0.8731 35 1 3.1090 -2.5407 -0.9313 36 1 4.1081 -1.1190 -1.3432 37 1 0.7448 -1.0639 -4.8887 38 1 2.9555 -3.7768 -4.5344 39 1 4.0838 -4.9457 -6.3812 40 1 5.6079 -6.1980 -11.5598 41 1 2.7728 -1.9162 -9.1008 42 1 1.6351 -0.7522 -7.2566 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076703341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:41 Heat of formation + Delta-G solvation = -76.099031 kcal Electronic energy + Delta-G solvation = -25907.851216 eV Core-core repulsion = 22046.372589 eV Total energy + Delta-G solvation = -3861.478627 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.20321 -40.98825 -40.09215 -38.62456 -38.21225 -35.54191 -34.18631 -32.93097 -32.32286 -31.91841 -29.92494 -27.48238 -26.83219 -26.11430 -24.10301 -23.58502 -22.54435 -21.84198 -20.75897 -19.90016 -19.20801 -18.51111 -18.38390 -17.73300 -17.31377 -16.72099 -16.27170 -15.98400 -15.95308 -15.51977 -15.34692 -15.02868 -14.89446 -14.73492 -14.65602 -14.23289 -14.17528 -13.59232 -13.57541 -13.36003 -13.28258 -13.13097 -12.78532 -12.72482 -12.59092 -12.39827 -12.12772 -12.12221 -11.69384 -11.61186 -11.45969 -11.10168 -10.63506 -10.47254 -9.88638 -9.88242 -8.70842 -8.48042 -6.14893 0.05497 0.49801 0.67911 1.17081 1.35891 1.44546 1.52966 2.04074 2.17540 2.37364 2.78431 3.10876 3.19072 3.47922 3.58288 3.68355 3.95877 4.04901 4.07216 4.20669 4.29989 4.42081 4.44042 4.56906 4.63053 4.64761 4.74645 4.87732 4.94681 5.03897 5.05590 5.07335 5.11727 5.14778 5.26708 5.29340 5.35172 5.46820 5.49616 5.65413 5.94182 6.00864 6.08950 6.19837 6.62144 6.87798 6.96711 7.74591 8.74568 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023511 B = 0.002572 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.624793 B =10884.787827 C =11844.808619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.122 3.878 3 H 0.090 0.910 4 C -0.120 4.120 5 C -0.127 4.127 6 C 0.099 3.901 7 N -0.586 5.586 8 C 0.526 3.474 9 O -0.534 6.534 10 C 0.497 3.503 11 O -0.523 6.523 12 N -0.620 5.620 13 C 0.049 3.951 14 C -0.067 4.067 15 C -0.227 4.227 16 C 0.113 3.887 17 O -0.224 6.224 18 C -0.414 4.414 19 H 0.101 0.899 20 C -0.020 4.020 21 N -0.917 5.917 22 Si 1.017 2.983 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.255 1.255 26 C -0.180 4.180 27 C -0.072 4.072 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.428 0.572 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.274 0.726 41 H 0.131 0.869 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 10.444 25.409 28.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.021 3.979 3 H 0.108 0.892 4 C -0.158 4.158 5 C -0.165 4.165 6 C -0.023 4.023 7 N -0.320 5.320 8 C 0.309 3.691 9 O -0.412 6.412 10 C 0.280 3.720 11 O -0.399 6.399 12 N -0.268 5.268 13 C -0.044 4.044 14 C -0.087 4.087 15 C -0.247 4.247 16 C 0.062 3.938 17 O -0.130 6.130 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.218 4.218 21 N -0.555 5.555 22 Si 0.836 3.164 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.178 1.178 26 C -0.199 4.199 27 C -0.091 4.091 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.267 0.733 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.083 0.917 41 H 0.149 0.851 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.046 10.363 24.986 27.953 hybrid contribution 0.137 -0.690 -0.643 0.953 sum -6.909 9.673 24.343 27.090 Atomic orbital electron populations 1.22137 0.93667 1.02383 1.03852 1.22432 0.95528 0.96248 0.83715 0.89173 1.22933 0.95607 1.00843 0.96371 1.22724 0.97919 1.03980 0.91865 1.22328 0.85957 0.96700 0.97363 1.48530 1.28175 1.47008 1.08250 1.19425 0.84268 0.82468 0.82951 1.90705 1.24895 1.43713 1.81927 1.20427 0.84594 0.82714 0.84310 1.90758 1.25175 1.41994 1.81974 1.42777 1.25705 1.51735 1.06555 1.17372 1.04523 0.94643 0.87829 1.20921 0.96221 0.92963 0.98621 1.21099 1.07587 1.03608 0.92365 1.19959 0.92141 0.93441 0.88273 1.83936 1.62890 1.32559 1.33616 1.21805 1.37267 0.93567 0.96402 0.88220 1.26553 0.97542 1.03623 0.94073 1.70174 1.44419 1.39892 1.00988 0.84610 0.77936 0.74850 0.78989 1.18774 1.19467 1.17830 1.20300 1.03211 0.95780 1.00628 1.20773 0.99008 0.99577 0.89767 0.93312 0.89265 0.91795 0.90161 0.86859 0.88218 0.89140 0.91337 0.91473 0.73300 0.84997 0.85978 0.91739 0.85147 0.81926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 8.71 71.98 0.63 -1.80 16 2 C 0.12 1.71 3.78 45.55 0.17 1.88 16 3 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.12 -0.97 6.51 32.06 0.21 -0.76 16 5 C -0.13 -1.19 6.95 31.78 0.22 -0.97 16 6 C 0.10 1.75 5.49 86.73 0.48 2.22 16 7 N -0.59 -11.83 3.24 -789.43 -2.56 -14.38 16 8 C 0.53 13.27 7.69 87.23 0.67 13.94 16 9 O -0.53 -14.43 14.13 -3.30 -0.05 -14.48 16 10 C 0.50 14.25 7.69 87.23 0.67 14.92 16 11 O -0.52 -17.12 11.55 -3.37 -0.04 -17.16 16 12 N -0.62 -17.18 5.32 -304.75 -1.62 -18.80 16 13 C 0.05 1.68 6.30 38.24 0.24 1.92 16 14 C -0.07 -2.63 8.69 22.39 0.19 -2.43 16 15 C -0.23 -10.29 9.16 22.37 0.20 -10.09 16 16 C 0.11 5.60 6.65 22.60 0.15 5.75 16 17 O -0.22 -13.35 9.75 -22.51 -0.22 -13.57 16 18 C -0.41 -24.13 9.48 67.92 0.64 -23.49 16 19 H 0.10 5.38 5.19 -2.91 -0.02 5.37 16 20 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 21 N -0.92 -55.88 13.67 21.61 0.30 -55.59 16 22 Si 1.02 42.91 29.55 68.60 2.03 44.94 16 23 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 26 C -0.18 -7.38 9.98 22.37 0.22 -7.15 16 27 C -0.07 -2.35 9.96 22.39 0.22 -2.13 16 28 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.30 5.89 -2.39 -0.01 1.28 16 31 H 0.08 0.68 8.07 -2.39 -0.02 0.66 16 32 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 1.39 7.58 -2.39 -0.02 1.37 16 36 H 0.07 1.37 7.69 -2.39 -0.02 1.35 16 37 H 0.43 9.65 8.30 -92.70 -0.77 8.88 16 38 H 0.13 4.96 6.22 -2.91 -0.02 4.94 16 39 H 0.12 5.65 5.63 -2.91 -0.02 5.64 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.13 5.11 8.06 -2.91 -0.02 5.09 16 42 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -73.47 348.91 3.53 -69.94 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.30 Total: 27.95 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 5.39 Total: -8.85 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -3.88 Total: -88.78 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -0.31 Total: -45.21 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -73.47 3.53 -69.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076703341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.155 kcal (2) G-P(sol) polarization free energy of solvation -73.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds