Wall clock time and date at job start Tue Mar 31 2020 13:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46815 * 2 1 4 4 C 1.46501 * 120.00475 * 270.00125 * 3 2 1 5 5 C 1.50703 * 109.46961 * 270.00544 * 4 3 2 6 6 H 1.07992 * 120.00454 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99410 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00057 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99442 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47157 * 59.99981 * 9 7 5 11 11 H 1.48500 * 109.46627 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47057 * 299.99585 * 9 7 5 13 13 C 1.34779 * 119.99982 * 90.00742 * 3 2 1 14 14 O 1.21274 * 120.00426 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99651 * 359.97438 * 13 3 2 16 16 C 1.53002 * 109.46707 * 180.02562 * 15 13 3 17 17 N 1.46501 * 109.46599 * 180.02562 * 16 15 13 18 18 C 1.39464 * 126.25915 * 270.16888 * 17 16 15 19 19 C 1.38612 * 133.35881 * 359.96784 * 18 17 16 20 20 C 1.38129 * 119.82112 * 180.37352 * 19 18 17 21 21 C 1.38409 * 120.18847 * 359.96478 * 20 19 18 22 22 C 1.38123 * 120.31157 * 0.03537 * 21 20 19 23 23 C 1.38610 * 119.91414 * 359.97438 * 22 21 20 24 24 O 1.35558 * 132.99569 * 179.97438 * 23 22 21 25 25 C 1.34223 * 109.18234 * 180.02562 * 24 23 22 26 26 O 1.21603 * 125.27599 * 179.97438 * 25 24 23 27 27 H 1.08999 * 109.46561 * 299.99664 * 1 2 3 28 28 H 1.08994 * 109.47483 * 59.99693 * 1 2 3 29 29 H 1.09000 * 109.46517 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47264 * 240.00590 * 2 1 3 31 31 H 1.08994 * 109.47483 * 120.00307 * 2 1 3 32 32 H 1.08997 * 109.46696 * 30.00013 * 4 3 2 33 33 H 1.08995 * 109.47045 * 150.00214 * 4 3 2 34 34 H 0.97010 * 119.99625 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.46709 * 60.00923 * 15 13 3 36 36 H 1.08993 * 109.47018 * 300.00557 * 15 13 3 37 37 H 1.08997 * 109.46967 * 60.00855 * 16 15 13 38 38 H 1.09002 * 109.47241 * 300.00351 * 16 15 13 39 39 H 1.07999 * 120.09081 * 0.37668 * 19 18 17 40 40 H 1.08001 * 119.90404 * 179.97438 * 20 19 18 41 41 H 1.08001 * 119.84498 * 180.02562 * 21 20 19 42 42 H 1.07995 * 120.04044 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8352 -1.7038 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3908 -2.8775 8 7 3.3492 3.1269 -3.6174 9 14 5.9137 2.0978 -3.4164 10 1 6.1415 0.6413 -3.5945 11 1 6.1610 2.7979 -4.7025 12 1 6.8408 2.6210 -2.3812 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9915 1.3062 2.4723 16 6 2.3225 2.2437 3.6353 17 7 2.0785 1.5529 4.9039 18 6 0.8798 1.5357 5.6166 19 6 -0.3652 2.1046 5.3985 20 6 -1.3802 1.9082 6.3145 21 6 -1.1571 1.1450 7.4475 22 6 0.0809 0.5750 7.6714 23 6 1.1056 0.7668 6.7579 24 8 2.3927 0.3440 6.7103 25 6 2.9707 0.8154 5.5943 26 8 4.1225 0.6133 5.2609 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.5817 1.6879 -2.0283 33 1 2.0955 3.1411 -1.1382 34 1 3.6753 3.5175 -4.4434 35 1 2.6215 0.4186 2.5301 36 1 0.9435 1.0123 2.5299 37 1 1.6922 3.1310 3.5773 38 1 3.3705 2.5380 3.5778 39 1 -0.5412 2.6999 4.5147 40 1 -2.3507 2.3512 6.1462 41 1 -1.9548 0.9947 8.1599 42 1 0.2500 -0.0200 8.5566 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103207560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:20 Heat of formation + Delta-G solvation = -51.262178 kcal Electronic energy + Delta-G solvation = -26416.132241 eV Core-core repulsion = 22555.730620 eV Total energy + Delta-G solvation = -3860.401620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.47947 -39.32416 -38.83794 -37.64358 -36.32381 -35.38087 -32.92511 -31.87416 -31.01484 -30.15290 -29.50247 -27.38503 -25.26943 -23.73224 -23.08524 -23.04131 -22.58664 -21.21283 -18.89180 -18.50356 -17.99882 -17.48984 -16.72842 -16.58835 -16.33714 -15.62945 -15.32320 -15.01301 -14.85062 -14.50996 -14.36181 -14.27385 -13.67146 -13.53735 -13.45687 -13.27667 -12.85804 -12.68590 -12.26984 -12.17624 -12.04479 -11.71092 -11.62384 -11.36478 -11.21487 -11.01198 -10.95410 -10.90201 -10.72227 -10.52464 -10.15520 -9.68381 -9.20606 -9.06022 -8.45216 -8.42271 -7.74857 -6.06508 -4.11303 0.70250 0.78574 1.85151 2.30081 2.60281 3.18413 3.27136 3.32297 3.36161 3.41072 3.83506 4.00385 4.39733 4.43647 4.49504 4.72108 4.80225 4.81473 4.94855 4.97523 5.05769 5.22978 5.28275 5.37979 5.39630 5.53796 5.57353 5.68682 5.73476 5.80793 5.90599 5.97492 5.99387 6.05640 6.17780 6.21576 6.42195 6.95987 6.99627 7.38826 7.47504 7.48395 7.89505 8.20378 8.32532 8.84043 8.99516 9.54020 11.01545 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020049 B = 0.003055 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.269042 B = 9162.422918 C = 9845.327914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.104 3.896 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.512 3.488 14 O -0.542 6.542 15 C -0.161 4.161 16 C 0.147 3.853 17 N -0.544 5.544 18 C 0.076 3.924 19 C -0.101 4.101 20 C -0.098 4.098 21 C -0.113 4.113 22 C -0.080 4.080 23 C 0.031 3.969 24 O -0.239 6.239 25 C 0.633 3.367 26 O -0.480 6.480 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.770 -5.957 20.787 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 N -0.325 5.325 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.297 3.703 14 O -0.421 6.421 15 C -0.202 4.202 16 C 0.027 3.973 17 N -0.275 5.275 18 C -0.022 4.022 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.132 4.132 22 C -0.099 4.099 23 C -0.016 4.016 24 O -0.145 6.145 25 C 0.388 3.612 26 O -0.362 6.362 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.687 -5.476 20.469 24.696 hybrid contribution 1.050 -0.289 -0.573 1.231 sum -11.637 -5.765 19.896 23.759 Atomic orbital electron populations 1.22208 0.96682 1.01486 1.02249 1.21445 0.93556 0.84140 1.02837 1.48254 1.63239 1.13259 1.07702 1.19287 0.96343 0.93606 0.77959 1.21401 0.96898 1.32077 1.06374 0.92484 1.24925 0.97891 0.94841 0.96344 1.69920 1.35758 1.33348 1.14374 0.86557 0.84756 0.78297 0.77834 1.20232 1.21155 1.20108 1.19910 0.78773 0.86806 0.84768 1.90691 1.46083 1.18039 1.87240 1.22098 1.03927 1.00538 0.93656 1.21472 1.05385 0.93746 0.76682 1.46094 1.09604 1.48575 1.23207 1.18642 0.89447 1.01313 0.92835 1.20217 0.89301 1.01167 1.01449 1.21035 0.98850 0.98287 0.93496 1.20943 0.95883 0.98031 0.98304 1.20029 0.89931 1.01625 0.98295 1.19047 0.84153 1.00800 0.97597 1.85000 1.22902 1.65596 1.41015 1.18576 0.85326 0.78864 0.78482 1.91199 1.13072 1.62572 1.69362 0.93182 0.91933 0.92119 0.89781 0.91775 0.94941 0.93813 0.92639 0.88660 0.88940 0.87844 0.87336 0.84478 0.84331 0.84191 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.59 -12.16 2.46 -175.06 -0.43 -12.59 16 4 C 0.25 6.33 5.16 -5.19 -0.03 6.31 16 5 C -0.53 -14.97 9.39 -34.44 -0.32 -15.29 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 9 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 C 0.51 10.12 7.67 -10.98 -0.08 10.04 16 14 O -0.54 -12.91 15.56 5.56 0.09 -12.82 16 15 C -0.16 -2.31 4.58 -27.88 -0.13 -2.44 16 16 C 0.15 2.01 5.33 -4.04 -0.02 1.99 16 17 N -0.54 -7.04 2.81 -119.01 -0.33 -7.37 16 18 C 0.08 0.81 6.84 -83.79 -0.57 0.24 16 19 C -0.10 -0.81 10.04 -39.48 -0.40 -1.21 16 20 C -0.10 -0.57 10.04 -39.56 -0.40 -0.97 16 21 C -0.11 -0.61 10.03 -39.56 -0.40 -1.00 16 22 C -0.08 -0.58 10.06 -39.49 -0.40 -0.97 16 23 C 0.03 0.33 7.35 -38.99 -0.29 0.04 16 24 O -0.24 -3.18 10.72 -21.97 -0.24 -3.41 16 25 C 0.63 9.52 9.07 54.06 0.49 10.01 16 26 O -0.48 -8.78 17.81 -19.01 -0.34 -9.12 16 27 H 0.05 0.59 7.22 -51.93 -0.37 0.21 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 31 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 32 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.10 1.38 7.40 -51.93 -0.38 0.99 16 36 H 0.09 1.10 7.18 -51.93 -0.37 0.73 16 37 H 0.10 1.29 8.10 -51.93 -0.42 0.86 16 38 H 0.11 1.69 8.02 -51.93 -0.42 1.27 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 42 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -34.84 363.24 -7.95 -42.80 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -5.61 Total: -2.49 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -2.28 Total: 8.27 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.03 Total: -45.70 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.49 Total: -25.35 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.84 -7.95 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103207560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.465 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds