Wall clock time and date at job start Tue Mar 31 2020 13:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46815 * 2 1 4 4 C 1.46501 * 120.00475 * 270.00125 * 3 2 1 5 5 C 1.50703 * 109.46961 * 270.00544 * 4 3 2 6 6 H 1.07992 * 120.00454 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99410 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00057 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99442 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47157 * 59.99981 * 9 7 5 11 11 H 1.48500 * 109.46627 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47057 * 299.99585 * 9 7 5 13 13 C 1.34779 * 119.99982 * 90.00742 * 3 2 1 14 14 O 1.21274 * 120.00426 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99651 * 359.97438 * 13 3 2 16 16 C 1.53002 * 109.46707 * 180.02562 * 15 13 3 17 17 N 1.46501 * 109.46599 * 180.02562 * 16 15 13 18 18 C 1.39464 * 126.25915 * 270.16888 * 17 16 15 19 19 C 1.38612 * 133.35881 * 359.96784 * 18 17 16 20 20 C 1.38129 * 119.82112 * 180.37352 * 19 18 17 21 21 C 1.38409 * 120.18847 * 359.96478 * 20 19 18 22 22 C 1.38123 * 120.31157 * 0.03537 * 21 20 19 23 23 C 1.38610 * 119.91414 * 359.97438 * 22 21 20 24 24 O 1.35558 * 132.99569 * 179.97438 * 23 22 21 25 25 C 1.34223 * 109.18234 * 180.02562 * 24 23 22 26 26 O 1.21603 * 125.27599 * 179.97438 * 25 24 23 27 27 H 1.08999 * 109.46561 * 299.99664 * 1 2 3 28 28 H 1.08994 * 109.47483 * 59.99693 * 1 2 3 29 29 H 1.09000 * 109.46517 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47264 * 240.00590 * 2 1 3 31 31 H 1.08994 * 109.47483 * 120.00307 * 2 1 3 32 32 H 1.08997 * 109.46696 * 30.00013 * 4 3 2 33 33 H 1.08995 * 109.47045 * 150.00214 * 4 3 2 34 34 H 0.97010 * 119.99625 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.46709 * 60.00923 * 15 13 3 36 36 H 1.08993 * 109.47018 * 300.00557 * 15 13 3 37 37 H 1.08997 * 109.46967 * 60.00855 * 16 15 13 38 38 H 1.09002 * 109.47241 * 300.00351 * 16 15 13 39 39 H 1.07999 * 120.09081 * 0.37668 * 19 18 17 40 40 H 1.08001 * 119.90404 * 179.97438 * 20 19 18 41 41 H 1.08001 * 119.84498 * 180.02562 * 21 20 19 42 42 H 1.07995 * 120.04044 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8352 -1.7038 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3908 -2.8775 8 7 3.3492 3.1269 -3.6174 9 14 5.9137 2.0978 -3.4164 10 1 6.1415 0.6413 -3.5945 11 1 6.1610 2.7979 -4.7025 12 1 6.8408 2.6210 -2.3812 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9915 1.3062 2.4723 16 6 2.3225 2.2437 3.6353 17 7 2.0785 1.5529 4.9039 18 6 0.8798 1.5357 5.6166 19 6 -0.3652 2.1046 5.3985 20 6 -1.3802 1.9082 6.3145 21 6 -1.1571 1.1450 7.4475 22 6 0.0809 0.5750 7.6714 23 6 1.1056 0.7668 6.7579 24 8 2.3927 0.3440 6.7103 25 6 2.9707 0.8154 5.5943 26 8 4.1225 0.6133 5.2609 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.5817 1.6879 -2.0283 33 1 2.0955 3.1411 -1.1382 34 1 3.6753 3.5175 -4.4434 35 1 2.6215 0.4186 2.5301 36 1 0.9435 1.0123 2.5299 37 1 1.6922 3.1310 3.5773 38 1 3.3705 2.5380 3.5778 39 1 -0.5412 2.6999 4.5147 40 1 -2.3507 2.3512 6.1462 41 1 -1.9548 0.9947 8.1599 42 1 0.2500 -0.0200 8.5566 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103207560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:19 Heat of formation + Delta-G solvation = -72.708884 kcal Electronic energy + Delta-G solvation = -26417.062240 eV Core-core repulsion = 22555.730620 eV Total energy + Delta-G solvation = -3861.331619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.38462 -40.89804 -39.69165 -38.61588 -37.39120 -36.95245 -34.97092 -33.09501 -31.66356 -31.56346 -30.30436 -29.16308 -26.69190 -24.76166 -24.45097 -24.02456 -23.80455 -22.24253 -20.01446 -19.62833 -18.97769 -18.61520 -18.51749 -17.83655 -17.65663 -17.25218 -16.65370 -16.27624 -15.96041 -15.69716 -15.34410 -14.92666 -14.81252 -14.76734 -14.65342 -14.51471 -14.19170 -14.03535 -13.58806 -13.28186 -13.24629 -13.18560 -13.03942 -12.68357 -12.60599 -12.48957 -12.29622 -12.16682 -12.00625 -11.90650 -11.76195 -11.71576 -10.72672 -10.66253 -9.79677 -9.50076 -9.22918 -8.25163 -6.39474 0.09451 0.16182 0.84287 1.22614 1.34406 1.38216 1.45433 1.71390 1.76767 2.27409 2.41734 2.63537 3.04574 3.29271 3.42631 3.54563 3.67457 3.94027 4.01797 4.06855 4.21742 4.27761 4.29153 4.39690 4.42023 4.54633 4.63396 4.65196 4.80938 4.93088 4.96354 5.02351 5.03823 5.19958 5.22543 5.36448 5.36976 5.47111 5.54428 5.64570 5.80976 6.04054 6.10750 6.40931 6.64850 6.73351 7.23653 7.39306 8.81587 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020049 B = 0.003055 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.269042 B = 9162.422918 C = 9845.327914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.600 5.600 4 C 0.264 3.736 5 C -0.548 4.548 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.925 5.925 9 Si 0.963 3.037 10 H -0.262 1.262 11 H -0.275 1.275 12 H -0.280 1.280 13 C 0.505 3.495 14 O -0.591 6.591 15 C -0.139 4.139 16 C 0.153 3.847 17 N -0.537 5.537 18 C 0.050 3.950 19 C -0.105 4.105 20 C -0.086 4.086 21 C -0.095 4.095 22 C -0.079 4.079 23 C 0.001 3.999 24 O -0.247 6.247 25 C 0.626 3.374 26 O -0.530 6.530 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.025 0.975 33 H 0.002 0.998 34 H 0.268 0.732 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.146 0.854 40 H 0.173 0.827 41 H 0.180 0.820 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.420 -7.290 22.654 28.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.330 5.330 4 C 0.142 3.858 5 C -0.586 4.586 6 H 0.067 0.933 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.787 3.213 10 H -0.187 1.187 11 H -0.200 1.200 12 H -0.206 1.206 13 C 0.293 3.707 14 O -0.473 6.473 15 C -0.180 4.180 16 C 0.033 3.967 17 N -0.269 5.269 18 C -0.047 4.047 19 C -0.125 4.125 20 C -0.105 4.105 21 C -0.114 4.114 22 C -0.097 4.097 23 C -0.045 4.045 24 O -0.153 6.153 25 C 0.382 3.618 26 O -0.416 6.416 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.043 0.957 33 H 0.020 0.980 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.135 0.865 38 H 0.099 0.901 39 H 0.164 0.836 40 H 0.190 0.810 41 H 0.197 0.803 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.415 -6.851 22.374 28.020 hybrid contribution 1.664 0.148 -1.036 1.965 sum -13.751 -6.704 21.338 26.255 Atomic orbital electron populations 1.22132 0.93918 1.03570 1.02044 1.21759 0.95804 0.81335 1.03615 1.48266 1.63456 1.15019 1.06292 1.18716 0.95080 0.91734 0.80228 1.21694 0.98085 1.32178 1.06655 0.93261 1.25790 1.02162 0.94448 0.96393 1.70026 1.37665 1.33994 1.14790 0.85539 0.79301 0.78973 0.77442 1.18680 1.20035 1.20560 1.20773 0.77402 0.86390 0.86103 1.90661 1.48111 1.20443 1.88081 1.21943 1.06047 0.99714 0.90279 1.21272 1.04148 0.94166 0.77111 1.45868 1.10459 1.47881 1.22645 1.18938 0.89496 1.03229 0.93039 1.20529 0.88629 1.00889 1.02485 1.21515 0.99397 0.97047 0.92504 1.21473 0.95714 0.95790 0.98394 1.20487 0.89587 1.01515 0.98152 1.19602 0.83597 1.02247 0.99052 1.84931 1.24608 1.65627 1.40118 1.18647 0.85108 0.79059 0.78987 1.91141 1.15044 1.64603 1.70830 0.91686 0.93848 0.88809 0.91025 0.89009 0.95707 0.97985 0.92309 0.88345 0.85390 0.86527 0.90066 0.83603 0.80984 0.80305 0.82254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.24 71.98 0.74 -2.95 16 2 C 0.10 2.95 5.93 86.38 0.51 3.47 16 3 N -0.60 -25.06 2.46 -826.15 -2.03 -27.09 16 4 C 0.26 14.13 5.16 85.63 0.44 14.57 16 5 C -0.55 -32.00 9.39 25.60 0.24 -31.76 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.67 5.46 84.66 0.46 1.13 16 8 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 9 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 10 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 13 C 0.51 20.41 7.67 87.66 0.67 21.08 16 14 O -0.59 -29.50 15.56 -3.01 -0.05 -29.55 16 15 C -0.14 -3.91 4.58 29.85 0.14 -3.77 16 16 C 0.15 4.28 5.33 86.38 0.46 4.74 16 17 N -0.54 -13.96 2.81 -761.03 -2.14 -16.10 16 18 C 0.05 0.99 6.84 38.31 0.26 1.25 16 19 C -0.10 -1.36 10.04 22.33 0.22 -1.14 16 20 C -0.09 -0.58 10.04 22.28 0.22 -0.36 16 21 C -0.10 -0.54 10.03 22.28 0.22 -0.32 16 22 C -0.08 -0.88 10.06 22.33 0.22 -0.65 16 23 C 0.00 0.01 7.35 22.65 0.17 0.18 16 24 O -0.25 -6.68 10.72 8.59 0.09 -6.58 16 25 C 0.63 19.60 9.07 129.79 1.18 20.77 16 26 O -0.53 -20.60 17.81 19.18 0.34 -20.26 16 27 H 0.06 1.32 7.22 -2.39 -0.02 1.30 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 31 H 0.09 2.29 6.44 -2.39 -0.02 2.27 16 32 H 0.02 1.35 8.07 -2.39 -0.02 1.33 16 33 H 0.00 0.12 7.42 -2.39 -0.02 0.11 16 34 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 35 H 0.10 2.77 7.40 -2.39 -0.02 2.75 16 36 H 0.13 2.69 7.18 -2.39 -0.02 2.67 16 37 H 0.12 2.91 8.10 -2.39 -0.02 2.89 16 38 H 0.08 2.72 8.02 -2.39 -0.02 2.70 16 39 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.17 0.08 8.06 -2.91 -0.02 0.06 16 41 H 0.18 -0.29 8.06 -2.91 -0.02 -0.31 16 42 H 0.16 1.07 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -81.88 363.24 5.73 -76.15 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.03 Total: 5.16 kcal Atomic # 6 Polarization: 20.08 SS G_CDS: 6.16 Total: 26.24 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -3.88 Total: -98.95 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: 0.39 Total: -56.39 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -81.88 5.73 -76.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103207560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.439 kcal (2) G-P(sol) polarization free energy of solvation -81.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds