Wall clock time and date at job start Tue Mar 31 2020 13:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47196 * 2 1 4 4 C 1.46498 * 119.99867 * 269.99988 * 3 2 1 5 5 C 1.50695 * 109.47397 * 269.99876 * 4 3 2 6 6 H 1.07995 * 120.00021 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00335 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99742 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00184 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47124 * 90.00010 * 9 7 5 11 11 H 1.48496 * 109.46998 * 209.99730 * 9 7 5 12 12 H 1.48492 * 109.47272 * 329.99762 * 9 7 5 13 13 C 1.34772 * 120.00141 * 89.99871 * 3 2 1 14 14 O 1.21281 * 120.00687 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99899 * 0.02562 * 13 3 2 16 16 C 1.50698 * 109.47150 * 179.97438 * 15 13 3 17 17 N 1.34164 * 126.05245 * 270.26200 * 16 15 13 18 18 C 1.31526 * 108.62047 * 180.14663 * 17 16 15 19 19 C 1.46998 * 125.76306 * 179.89305 * 18 17 16 20 20 C 1.36326 * 125.96853 * 179.71516 * 19 18 17 21 21 C 1.40716 * 106.71799 * 180.02562 * 20 19 18 22 22 C 1.34878 * 107.08369 * 359.97438 * 21 20 19 23 23 O 1.34222 * 108.73214 * 0.02562 * 22 21 20 24 24 O 1.34551 * 108.47827 * 359.62999 * 18 17 16 25 25 C 1.34524 * 126.05439 * 90.00006 * 16 15 13 26 26 C 1.50696 * 126.33075 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47150 * 299.99944 * 1 2 3 29 29 H 1.09004 * 109.47303 * 59.99598 * 1 2 3 30 30 H 1.08999 * 109.47150 * 240.00056 * 2 1 3 31 31 H 1.09004 * 109.47303 * 120.00402 * 2 1 3 32 32 H 1.08999 * 109.47513 * 30.00685 * 4 3 2 33 33 H 1.09004 * 109.46885 * 149.99972 * 4 3 2 34 34 H 0.97003 * 119.99860 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46919 * 59.99809 * 15 13 3 36 36 H 1.08991 * 109.47338 * 299.99818 * 15 13 3 37 37 H 1.07993 * 126.63951 * 0.02562 * 20 19 18 38 38 H 1.07994 * 126.45150 * 180.02562 * 21 20 19 39 39 H 1.07998 * 125.63021 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.46963 * 179.97438 * 26 25 16 41 41 H 1.08999 * 109.47387 * 299.97002 * 26 25 16 42 42 H 1.08999 * 109.47025 * 59.97883 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1494 2.3905 -2.8775 8 7 3.3493 3.1265 -3.6177 9 14 5.9133 2.0964 -3.4171 10 1 5.9760 0.8758 -4.2608 11 1 6.3928 3.2639 -4.1995 12 1 6.7735 1.9155 -2.2203 13 6 2.2429 2.0166 1.1671 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3060 2.4723 16 6 2.3192 2.2291 3.6177 17 7 3.5144 2.3547 4.2142 18 6 3.4138 3.2511 5.1714 19 6 4.4996 3.6790 6.0651 20 6 4.4015 4.6115 7.0548 21 6 5.6729 4.7045 7.6507 22 6 6.4774 3.8352 7.0056 23 8 5.7663 3.2180 6.0491 24 8 2.1508 3.7147 5.1906 25 6 1.4656 3.0766 4.2200 26 6 0.0126 3.2764 3.8736 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5816 1.6878 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6753 3.5170 -4.4436 35 1 2.6228 0.4187 2.5298 36 1 0.9445 1.0114 2.5303 37 1 3.5190 5.1704 7.3284 38 1 5.9515 5.3498 8.4706 39 1 7.5214 3.6640 7.2229 40 1 -0.4186 4.0278 4.5352 41 1 -0.0717 3.6113 2.8398 42 1 -0.5227 2.3348 3.9954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103210699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:08 Heat of formation + Delta-G solvation = 6.588532 kcal Electronic energy + Delta-G solvation = -26251.855995 eV Core-core repulsion = 22393.962970 eV Total energy + Delta-G solvation = -3857.893025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.35503 -42.66705 -39.03898 -35.44894 -34.91242 -33.49392 -33.15790 -32.72133 -30.27900 -30.14356 -29.73850 -26.99150 -25.81475 -23.22724 -22.96359 -22.58811 -22.15420 -21.00540 -20.40549 -18.54064 -18.07960 -17.09416 -16.51070 -16.33570 -16.23151 -15.87362 -15.50577 -15.37916 -14.53986 -14.32317 -13.79679 -13.48223 -13.38373 -13.19910 -13.15508 -13.01591 -12.95711 -12.70769 -12.55560 -12.31173 -11.99870 -11.77749 -11.48926 -11.21557 -11.14984 -10.88049 -10.71580 -10.51799 -10.41443 -10.27105 -10.09400 -9.60290 -9.54202 -8.87534 -8.40075 -8.01775 -7.64460 -6.01220 -4.05255 0.68991 1.77708 1.85545 2.27204 2.94163 3.31265 3.32942 3.39329 3.41770 3.47851 3.77870 4.04208 4.48736 4.64577 4.67288 4.73978 4.78949 5.06339 5.14846 5.19131 5.31260 5.33603 5.38068 5.48748 5.50512 5.56628 5.61333 5.65690 5.73455 5.79584 5.95932 5.99535 6.04698 6.13029 6.22547 6.24142 6.48653 6.76538 7.08907 7.46597 7.57891 7.71010 7.95868 8.27333 8.43602 8.93988 9.12230 9.59827 11.06871 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.003606 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.564124 B = 7762.476971 C = 9382.671627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.597 5.597 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.510 3.490 14 O -0.533 6.533 15 C -0.063 4.063 16 C 0.023 3.977 17 N -0.433 5.433 18 C 0.243 3.757 19 C 0.069 3.931 20 C -0.162 4.162 21 C -0.216 4.216 22 C -0.016 4.016 23 O -0.146 6.146 24 O -0.185 6.185 25 C -0.023 4.023 26 C -0.068 4.068 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.042 0.958 34 H 0.263 0.737 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.213 0.787 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -2.705 21.216 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.329 5.329 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.295 3.705 14 O -0.410 6.410 15 C -0.104 4.104 16 C -0.099 4.099 17 N -0.163 5.163 18 C 0.040 3.960 19 C 0.017 3.983 20 C -0.183 4.183 21 C -0.235 4.235 22 C -0.085 4.085 23 O -0.040 6.040 24 O -0.072 6.072 25 C -0.076 4.076 26 C -0.124 4.124 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.176 0.824 38 H 0.175 0.825 39 H 0.229 0.771 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.088 -2.501 20.676 21.224 hybrid contribution 0.522 0.347 -0.171 0.650 sum -3.566 -2.154 20.505 20.924 Atomic orbital electron populations 1.22227 0.96779 1.01453 1.02278 1.21447 0.93490 0.84231 1.02860 1.48231 1.63909 1.13245 1.07549 1.19253 0.96254 0.93574 0.78038 1.21459 0.96994 1.31751 1.06183 0.92447 1.24927 0.97831 0.94917 0.96427 1.69934 1.35680 1.33564 1.14339 0.86510 0.84799 0.77639 0.78600 1.20622 1.21109 1.19855 1.20009 0.78884 0.86976 0.84623 1.90694 1.45092 1.18148 1.87028 1.20109 1.03420 0.97509 0.89333 1.20804 0.88443 1.01113 0.99577 1.70697 1.24113 1.15892 1.05561 1.21179 0.82460 0.95583 0.96769 1.17587 0.82197 1.00194 0.98288 1.21877 0.99844 0.99842 0.96782 1.21762 0.93209 1.03949 1.04551 1.24376 0.98109 0.96078 0.89981 1.84161 1.18575 1.53975 1.47311 1.84395 1.20755 1.54554 1.47519 1.23283 0.96881 0.96256 0.91214 1.20349 0.84795 1.03811 1.03470 0.92116 0.93101 0.92000 0.89857 0.91646 0.94966 0.93989 0.92784 0.87486 0.87762 0.82447 0.82520 0.77073 0.90179 0.88638 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.10 1.62 5.93 -4.04 -0.02 1.60 16 3 N -0.60 -12.62 2.46 -175.06 -0.43 -13.05 16 4 C 0.25 6.53 5.16 -5.20 -0.03 6.50 16 5 C -0.52 -15.25 9.39 -34.44 -0.32 -15.57 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 9 Si 0.90 22.49 29.54 -169.99 -5.02 17.47 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.51 10.87 7.67 -10.99 -0.08 10.79 16 14 O -0.53 -14.07 15.61 5.56 0.09 -13.98 16 15 C -0.06 -1.00 4.58 -29.03 -0.13 -1.13 16 16 C 0.02 0.41 5.59 -82.89 -0.46 -0.06 16 17 N -0.43 -8.39 11.34 -8.13 -0.09 -8.48 16 18 C 0.24 4.18 8.12 -14.13 -0.11 4.06 16 19 C 0.07 1.02 7.24 -36.72 -0.27 0.75 16 20 C -0.16 -1.86 10.85 -39.33 -0.43 -2.29 16 21 C -0.22 -1.97 10.88 -39.84 -0.43 -2.40 16 22 C -0.02 -0.15 12.08 29.54 0.36 0.20 16 23 O -0.15 -2.08 10.67 4.54 0.05 -2.03 16 24 O -0.18 -2.92 10.80 3.46 0.04 -2.88 16 25 C -0.02 -0.35 7.38 -35.62 -0.26 -0.62 16 26 C -0.07 -0.70 9.94 36.00 0.36 -0.34 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.57 7.22 -51.93 -0.38 0.19 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 32 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 33 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.11 1.58 7.40 -51.93 -0.38 1.20 16 36 H 0.10 1.22 6.93 -51.93 -0.36 0.86 16 37 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -38.12 368.09 -6.25 -44.38 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.60 Total: -2.13 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.56 Total: 1.45 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.21 Total: -47.81 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.17 Total: -18.89 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.12 -6.25 -44.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103210699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.964 kcal (2) G-P(sol) polarization free energy of solvation -38.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds