Wall clock time and date at job start Tue Mar 31 2020 13:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47196 * 2 1 4 4 C 1.46498 * 119.99867 * 269.99988 * 3 2 1 5 5 C 1.50695 * 109.47397 * 269.99876 * 4 3 2 6 6 H 1.07995 * 120.00021 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00335 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99742 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00184 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47124 * 90.00010 * 9 7 5 11 11 H 1.48496 * 109.46998 * 209.99730 * 9 7 5 12 12 H 1.48492 * 109.47272 * 329.99762 * 9 7 5 13 13 C 1.34772 * 120.00141 * 89.99871 * 3 2 1 14 14 O 1.21281 * 120.00687 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99899 * 0.02562 * 13 3 2 16 16 C 1.50698 * 109.47150 * 179.97438 * 15 13 3 17 17 N 1.34164 * 126.05245 * 270.26200 * 16 15 13 18 18 C 1.31526 * 108.62047 * 180.14663 * 17 16 15 19 19 C 1.46998 * 125.76306 * 179.89305 * 18 17 16 20 20 C 1.36326 * 125.96853 * 179.71516 * 19 18 17 21 21 C 1.40716 * 106.71799 * 180.02562 * 20 19 18 22 22 C 1.34878 * 107.08369 * 359.97438 * 21 20 19 23 23 O 1.34222 * 108.73214 * 0.02562 * 22 21 20 24 24 O 1.34551 * 108.47827 * 359.62999 * 18 17 16 25 25 C 1.34524 * 126.05439 * 90.00006 * 16 15 13 26 26 C 1.50696 * 126.33075 * 359.97438 * 25 16 15 27 27 H 1.08999 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47150 * 299.99944 * 1 2 3 29 29 H 1.09004 * 109.47303 * 59.99598 * 1 2 3 30 30 H 1.08999 * 109.47150 * 240.00056 * 2 1 3 31 31 H 1.09004 * 109.47303 * 120.00402 * 2 1 3 32 32 H 1.08999 * 109.47513 * 30.00685 * 4 3 2 33 33 H 1.09004 * 109.46885 * 149.99972 * 4 3 2 34 34 H 0.97003 * 119.99860 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46919 * 59.99809 * 15 13 3 36 36 H 1.08991 * 109.47338 * 299.99818 * 15 13 3 37 37 H 1.07993 * 126.63951 * 0.02562 * 20 19 18 38 38 H 1.07994 * 126.45150 * 180.02562 * 21 20 19 39 39 H 1.07998 * 125.63021 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.46963 * 179.97438 * 26 25 16 41 41 H 1.08999 * 109.47387 * 299.97002 * 26 25 16 42 42 H 1.08999 * 109.47025 * 59.97883 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1494 2.3905 -2.8775 8 7 3.3493 3.1265 -3.6177 9 14 5.9133 2.0964 -3.4171 10 1 5.9760 0.8758 -4.2608 11 1 6.3928 3.2639 -4.1995 12 1 6.7735 1.9155 -2.2203 13 6 2.2429 2.0166 1.1671 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3060 2.4723 16 6 2.3192 2.2291 3.6177 17 7 3.5144 2.3547 4.2142 18 6 3.4138 3.2511 5.1714 19 6 4.4996 3.6790 6.0651 20 6 4.4015 4.6115 7.0548 21 6 5.6729 4.7045 7.6507 22 6 6.4774 3.8352 7.0056 23 8 5.7663 3.2180 6.0491 24 8 2.1508 3.7147 5.1906 25 6 1.4656 3.0766 4.2200 26 6 0.0126 3.2764 3.8736 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5816 1.6878 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6753 3.5170 -4.4436 35 1 2.6228 0.4187 2.5298 36 1 0.9445 1.0114 2.5303 37 1 3.5190 5.1704 7.3284 38 1 5.9515 5.3498 8.4706 39 1 7.5214 3.6640 7.2229 40 1 -0.4186 4.0278 4.5352 41 1 -0.0717 3.6113 2.8398 42 1 -0.5227 2.3348 3.9954 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103210699.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:07 Heat of formation + Delta-G solvation = -21.755247 kcal Electronic energy + Delta-G solvation = -26253.085074 eV Core-core repulsion = 22393.962970 eV Total energy + Delta-G solvation = -3859.122104 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.50858 -43.57369 -40.71130 -37.04462 -36.26564 -34.96909 -34.48745 -34.04033 -31.70499 -31.15156 -31.00037 -28.81411 -26.97387 -25.04215 -24.23068 -23.82634 -23.18238 -21.99459 -21.57214 -19.97732 -19.19990 -18.67299 -18.31172 -17.73096 -17.44607 -17.10149 -16.93192 -16.56539 -16.24336 -15.89948 -15.03529 -14.73612 -14.64651 -14.44100 -14.26473 -13.97279 -13.95822 -13.89466 -13.58348 -13.56186 -13.30944 -13.26316 -13.10335 -12.91296 -12.70750 -12.52938 -12.45541 -12.16008 -11.84617 -11.74098 -11.64916 -11.16369 -10.74597 -10.66101 -10.38310 -9.44981 -9.04800 -8.25050 -6.39255 -0.34994 0.74645 0.84124 1.32069 1.35579 1.38471 1.46007 1.78722 1.81549 2.30714 2.37107 2.49024 2.82534 3.04121 3.51340 3.66212 3.80102 3.89368 4.01162 4.11672 4.17081 4.27658 4.34701 4.47185 4.58294 4.62658 4.68172 4.70826 4.80488 4.88449 4.91342 4.99262 5.01803 5.03998 5.09124 5.14684 5.22699 5.41942 5.45847 5.56734 5.85537 5.90796 6.05624 6.52526 6.67953 6.78418 7.26099 7.47084 8.81733 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.003606 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.564124 B = 7762.476971 C = 9382.671627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 N -0.600 5.600 4 C 0.265 3.735 5 C -0.545 4.545 6 H 0.047 0.953 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.964 3.036 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.502 3.498 14 O -0.596 6.596 15 C -0.045 4.045 16 C -0.013 4.013 17 N -0.483 5.483 18 C 0.236 3.764 19 C 0.012 3.988 20 C -0.143 4.143 21 C -0.216 4.216 22 C -0.006 4.006 23 O -0.179 6.179 24 O -0.186 6.186 25 C -0.019 4.019 26 C -0.067 4.067 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.027 0.973 33 H -0.005 1.005 34 H 0.267 0.733 35 H 0.119 0.881 36 H 0.153 0.847 37 H 0.174 0.826 38 H 0.195 0.805 39 H 0.255 0.745 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.036 -3.748 23.325 24.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 N -0.331 5.331 4 C 0.143 3.857 5 C -0.584 4.584 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.566 5.566 9 Si 0.788 3.212 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.291 3.709 14 O -0.477 6.477 15 C -0.085 4.085 16 C -0.135 4.135 17 N -0.213 5.213 18 C 0.033 3.967 19 C -0.039 4.039 20 C -0.164 4.164 21 C -0.234 4.234 22 C -0.074 4.074 23 O -0.074 6.074 24 O -0.074 6.074 25 C -0.072 4.072 26 C -0.123 4.123 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.045 0.955 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.171 0.829 37 H 0.192 0.808 38 H 0.212 0.788 39 H 0.271 0.729 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.232 -3.604 22.785 23.453 hybrid contribution 0.610 0.738 -0.729 1.203 sum -3.623 -2.866 22.056 22.534 Atomic orbital electron populations 1.22163 0.93814 1.03732 1.02148 1.21831 0.95913 0.81024 1.03964 1.48253 1.63806 1.15206 1.05885 1.18672 0.95048 0.91477 0.80455 1.21728 0.98169 1.31984 1.06504 0.93438 1.25818 1.02265 0.94473 0.96447 1.70041 1.37643 1.34130 1.14766 0.85471 0.79145 0.78467 0.78074 1.18343 1.20394 1.20446 1.20985 0.77319 0.86432 0.86200 1.90655 1.47871 1.21150 1.88061 1.20078 1.06522 0.96594 0.85269 1.21116 0.88679 1.03005 1.00712 1.70627 1.25612 1.17813 1.07209 1.21710 0.83322 0.95061 0.96629 1.17793 0.82440 1.03172 1.00445 1.22290 1.01442 0.97756 0.94940 1.22215 0.91791 1.04214 1.05187 1.25414 0.99503 0.94565 0.87949 1.84134 1.18870 1.55317 1.49127 1.84399 1.20508 1.54580 1.47884 1.24118 0.98384 0.94671 0.90039 1.20615 0.82097 1.06529 1.03058 0.88529 0.91200 0.94223 0.91118 0.88220 0.95507 0.98678 0.92366 0.86293 0.82922 0.80823 0.78823 0.72940 0.88113 0.89716 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 10.24 71.98 0.74 -2.86 16 2 C 0.09 2.84 5.93 86.38 0.51 3.35 16 3 N -0.60 -25.94 2.46 -826.17 -2.03 -27.97 16 4 C 0.26 14.68 5.16 85.63 0.44 15.12 16 5 C -0.55 -32.86 9.39 25.60 0.24 -32.62 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.54 5.46 84.65 0.46 1.00 16 8 N -0.93 -57.37 13.29 21.45 0.28 -57.09 16 9 Si 0.96 46.87 29.54 68.60 2.03 48.89 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 13 C 0.50 21.97 7.67 87.66 0.67 22.64 16 14 O -0.60 -33.30 15.61 -3.03 -0.05 -33.35 16 15 C -0.04 -1.38 4.58 29.10 0.13 -1.25 16 16 C -0.01 -0.48 5.59 41.35 0.23 -0.25 16 17 N -0.48 -19.52 11.34 -293.48 -3.33 -22.85 16 18 C 0.24 8.44 8.12 87.04 0.71 9.15 16 19 C 0.01 0.36 7.24 24.12 0.17 0.53 16 20 C -0.14 -3.13 10.85 22.43 0.24 -2.89 16 21 C -0.22 -3.37 10.88 22.10 0.24 -3.13 16 22 C -0.01 -0.10 12.08 67.05 0.81 0.71 16 23 O -0.18 -5.17 10.67 -6.68 -0.07 -5.24 16 24 O -0.19 -5.98 10.80 -10.53 -0.11 -6.09 16 25 C -0.02 -0.57 7.38 24.83 0.18 -0.39 16 26 C -0.07 -1.25 9.94 71.23 0.71 -0.55 16 27 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.07 1.30 7.22 -2.39 -0.02 1.29 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 31 H 0.10 2.32 6.44 -2.39 -0.02 2.30 16 32 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 33 H 0.00 -0.32 7.42 -2.38 -0.02 -0.33 16 34 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 35 H 0.12 3.36 7.40 -2.38 -0.02 3.35 16 36 H 0.15 3.06 6.93 -2.39 -0.02 3.04 16 37 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 38 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 39 H 0.25 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -91.43 368.09 4.26 -87.17 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.04 Total: 7.94 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 6.50 Total: 8.58 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -5.07 Total: -107.91 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.23 Total: -44.68 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -91.43 4.26 -87.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103210699.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.417 kcal (2) G-P(sol) polarization free energy of solvation -91.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds