Wall clock time and date at job start Tue Mar 31 2020 12:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47247 * 2 1 4 4 C 1.50696 * 109.47234 * 120.00144 * 2 1 3 5 5 H 1.08000 * 120.00205 * 119.99584 * 4 2 1 6 6 C 1.37880 * 119.99901 * 299.99425 * 4 2 1 7 7 N 1.31513 * 120.00006 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00028 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47025 * 90.00291 * 8 6 4 10 10 H 1.48496 * 109.47256 * 210.00221 * 8 6 4 11 11 H 1.48497 * 109.46999 * 330.00141 * 8 6 4 12 12 N 1.46506 * 109.46980 * 239.99702 * 2 1 3 13 13 C 1.46496 * 119.99883 * 300.00571 * 12 2 1 14 14 C 1.34771 * 119.99762 * 119.99475 * 12 2 1 15 15 O 1.21551 * 120.00312 * 4.32575 * 14 12 2 16 16 C 1.47857 * 119.99800 * 184.31879 * 14 12 2 17 17 C 1.39616 * 120.11219 * 327.97886 * 16 14 12 18 18 C 1.37982 * 119.99642 * 179.97438 * 17 16 14 19 19 C 1.38261 * 120.22092 * 359.74344 * 18 17 16 20 20 C 1.38948 * 120.22108 * 0.51521 * 19 18 17 21 21 N 1.39982 * 119.99449 * 179.76475 * 20 19 18 22 22 C 1.47087 * 125.56227 * 359.72392 * 21 20 19 23 23 C 1.54085 * 103.90986 * 180.02562 * 22 21 20 24 24 O 1.45700 * 104.01109 * 359.92530 * 23 22 21 25 25 C 1.33780 * 109.47458 * 359.97438 * 24 23 22 26 26 O 1.21511 * 123.07482 * 179.97438 * 25 24 23 27 27 C 1.38629 * 120.00039 * 359.48725 * 20 19 18 28 28 H 1.09010 * 109.46604 * 300.00149 * 1 2 3 29 29 H 1.08994 * 109.47148 * 59.99851 * 1 2 3 30 30 H 1.09001 * 109.47446 * 180.02562 * 1 2 3 31 31 H 0.97002 * 120.00186 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46617 * 274.62443 * 13 12 2 33 33 H 1.09006 * 109.47781 * 34.62335 * 13 12 2 34 34 H 1.09003 * 109.47258 * 154.62773 * 13 12 2 35 35 H 1.07998 * 120.00190 * 359.97438 * 17 16 14 36 36 H 1.08000 * 119.89149 * 180.02562 * 18 17 16 37 37 H 1.07992 * 119.88982 * 180.26077 * 19 18 17 38 38 H 1.09003 * 110.56559 * 61.39458 * 22 21 20 39 39 H 1.09002 * 110.56602 * 298.68763 * 22 21 20 40 40 H 1.09000 * 110.52462 * 118.56012 * 23 22 21 41 41 H 1.09003 * 110.52043 * 241.29335 * 23 22 21 42 42 H 1.08004 * 120.10507 * 180.23245 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6306 -0.5439 4.4117 10 1 1.3447 -0.9489 5.1123 11 1 2.4881 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7930 -0.0357 -2.0834 15 8 3.1516 1.1027 -1.8532 16 6 3.2069 -0.7020 -3.3368 17 6 3.4128 -2.0826 -3.3612 18 6 3.7985 -2.7020 -4.5323 19 6 3.9773 -1.9605 -5.6855 20 6 3.7801 -0.5852 -5.6703 21 7 3.9673 0.1616 -6.8394 22 6 4.3755 -0.3803 -8.1444 23 6 4.4280 0.8581 -9.0597 24 8 4.0459 1.9593 -8.1855 25 6 3.8016 1.4894 -6.9570 26 8 3.4635 2.1993 -6.0306 27 6 3.3926 0.0466 -4.4987 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.7083 1.1610 3.4844 32 1 2.3694 -2.7374 -0.9027 33 1 0.6562 -2.2796 -1.0574 34 1 1.7038 -2.3062 -2.4963 35 1 3.2701 -2.6658 -2.4635 36 1 3.9569 -3.7702 -4.5494 37 1 4.2752 -2.4513 -6.6001 38 1 3.6382 -1.0952 -8.5098 39 1 5.3581 -0.8471 -8.0748 40 1 5.4373 1.0073 -9.4434 41 1 3.7174 0.7573 -9.8801 42 1 3.2352 1.1150 -4.4859 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103441901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:05 Heat of formation + Delta-G solvation = -40.026675 kcal Electronic energy + Delta-G solvation = -26623.904581 eV Core-core repulsion = 22763.990169 eV Total energy + Delta-G solvation = -3859.914412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.15975 -39.96027 -38.26863 -37.51681 -35.72163 -35.35247 -32.95141 -31.18894 -31.14515 -29.59654 -28.78009 -26.40554 -25.20545 -24.77723 -23.91682 -23.11113 -21.28262 -20.75713 -19.05236 -17.94614 -17.82015 -17.33653 -16.49424 -16.42838 -15.85521 -15.56749 -15.24333 -14.74410 -14.63592 -14.56898 -14.34446 -14.23391 -13.82733 -13.61416 -13.06417 -12.82333 -12.79318 -12.62376 -12.32204 -12.03786 -11.79988 -11.51646 -11.16155 -11.09064 -10.99342 -10.76289 -10.67694 -10.44159 -10.29908 -10.21412 -10.11737 -9.14790 -9.06989 -8.86554 -8.39308 -8.12845 -7.56344 -6.03555 -4.11593 0.96945 1.28237 1.92729 2.44360 2.98243 3.29796 3.32342 3.36429 3.38186 3.59081 3.86073 4.03035 4.16290 4.18584 4.43094 4.66395 4.72968 4.79712 4.91313 4.95672 5.19003 5.20336 5.28065 5.35292 5.51782 5.71603 5.91497 6.05021 6.14427 6.23761 6.29590 6.31881 6.50854 6.80232 6.84570 6.89020 7.03087 7.08958 7.46317 7.55896 7.68031 7.74515 8.05024 8.22576 8.53447 8.86263 9.06313 9.54532 11.01854 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.003021 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.571414 B = 9266.986000 C = 9876.285630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.584 5.584 13 C 0.069 3.931 14 C 0.541 3.459 15 O -0.539 6.539 16 C -0.085 4.085 17 C -0.122 4.122 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.167 3.833 21 N -0.571 5.571 22 C 0.060 3.940 23 C 0.042 3.958 24 O -0.320 6.320 25 C 0.639 3.361 26 O -0.487 6.487 27 C -0.102 4.102 28 H 0.095 0.905 29 H 0.012 0.988 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.749 -10.043 -24.679 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.074 4.074 14 C 0.328 3.672 15 O -0.417 6.417 16 C -0.089 4.089 17 C -0.141 4.141 18 C -0.120 4.120 19 C -0.163 4.163 20 C 0.075 3.925 21 N -0.309 5.309 22 C -0.063 4.063 23 C -0.033 4.033 24 O -0.231 6.231 25 C 0.394 3.606 26 O -0.369 6.369 27 C -0.123 4.123 28 H 0.113 0.887 29 H 0.031 0.969 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.167 0.833 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.634 -8.632 -24.032 26.149 hybrid contribution 0.381 -0.809 0.681 1.124 sum 6.015 -9.441 -23.351 25.895 Atomic orbital electron populations 1.22101 0.98108 0.99430 1.00972 1.18988 0.90905 0.94606 0.79735 0.91748 1.21300 1.31802 1.12984 0.90227 0.92245 1.24898 0.94958 0.95003 0.98960 1.69881 1.36314 1.22640 1.23747 0.86481 0.78655 0.79803 0.82352 1.20610 1.21148 1.19941 1.48139 1.48409 1.11617 1.23242 1.22197 1.01589 0.83380 1.00236 1.18186 0.79809 0.86099 0.83110 1.90765 1.55456 1.18229 1.77267 1.20129 1.00579 0.93716 0.94465 1.22042 0.98433 0.93933 0.99688 1.20865 0.99363 0.99885 0.91885 1.20744 1.04983 0.91003 0.99585 1.17205 1.01281 0.90220 0.83784 1.45388 1.68325 1.07214 1.09951 1.22943 1.03522 0.97707 0.82100 1.24343 1.03974 0.82177 0.92827 1.87353 1.81673 1.33814 1.20220 1.18599 0.77545 0.81606 0.82888 1.91065 1.49246 1.60546 1.36039 1.21622 0.98177 1.02953 0.89520 0.88688 0.96879 0.95026 0.92678 0.92696 0.91199 0.91069 0.83324 0.84938 0.85681 0.88177 0.88160 0.87143 0.87143 0.81800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 8.94 37.16 0.33 -3.30 16 2 C 0.26 6.81 2.63 -69.08 -0.18 6.63 16 3 H 0.06 1.98 6.91 -51.93 -0.36 1.63 16 4 C -0.52 -14.46 8.37 -34.44 -0.29 -14.75 16 5 H 0.06 1.60 7.52 -52.49 -0.39 1.21 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 12 N -0.58 -13.08 2.75 -176.37 -0.49 -13.56 16 13 C 0.07 1.18 8.08 59.84 0.48 1.67 16 14 C 0.54 12.38 7.44 -12.33 -0.09 12.29 16 15 O -0.54 -14.70 16.09 5.32 0.09 -14.62 16 16 C -0.08 -1.52 5.47 -104.99 -0.57 -2.10 16 17 C -0.12 -1.67 7.43 -39.16 -0.29 -1.96 16 18 C -0.10 -1.04 10.02 -39.67 -0.40 -1.44 16 19 C -0.14 -1.41 9.49 -39.31 -0.37 -1.78 16 20 C 0.17 2.20 6.63 -83.73 -0.56 1.64 16 21 N -0.57 -6.37 3.17 -118.21 -0.38 -6.75 16 22 C 0.06 0.29 6.46 -3.15 -0.02 0.27 16 23 C 0.04 0.18 8.23 37.72 0.31 0.49 16 24 O -0.32 -3.47 11.09 -37.85 -0.42 -3.89 16 25 C 0.64 9.01 8.78 53.85 0.47 9.49 16 26 O -0.49 -9.28 14.77 -19.12 -0.28 -9.56 16 27 C -0.10 -1.78 8.87 -38.98 -0.35 -2.13 16 28 H 0.09 2.55 6.07 -51.92 -0.32 2.23 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.03 0.71 6.69 -51.93 -0.35 0.36 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.05 0.88 7.30 -51.93 -0.38 0.50 16 33 H 0.07 1.19 6.45 -51.93 -0.33 0.86 16 34 H 0.07 1.00 4.71 -51.93 -0.24 0.76 16 35 H 0.15 1.91 4.81 -52.49 -0.25 1.65 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.13 0.77 7.29 -52.49 -0.38 0.39 16 38 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.16 3.40 5.15 -52.48 -0.27 3.13 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -37.27 342.18 -7.28 -44.55 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.95 Total: 0.65 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.61 Total: 6.70 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.23 Total: -45.30 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.62 Total: -28.07 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.27 -7.28 -44.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.522 kcal (2) G-P(sol) polarization free energy of solvation -37.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds