Wall clock time and date at job start Tue Mar 31 2020 12:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47247 * 2 1 4 4 C 1.50696 * 109.47234 * 120.00144 * 2 1 3 5 5 H 1.08000 * 120.00205 * 119.99584 * 4 2 1 6 6 C 1.37880 * 119.99901 * 299.99425 * 4 2 1 7 7 N 1.31513 * 120.00006 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00028 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47025 * 90.00291 * 8 6 4 10 10 H 1.48496 * 109.47256 * 210.00221 * 8 6 4 11 11 H 1.48497 * 109.46999 * 330.00141 * 8 6 4 12 12 N 1.46506 * 109.46980 * 239.99702 * 2 1 3 13 13 C 1.46496 * 119.99883 * 300.00571 * 12 2 1 14 14 C 1.34771 * 119.99762 * 119.99475 * 12 2 1 15 15 O 1.21551 * 120.00312 * 4.32575 * 14 12 2 16 16 C 1.47857 * 119.99800 * 184.31879 * 14 12 2 17 17 C 1.39616 * 120.11219 * 327.97886 * 16 14 12 18 18 C 1.37982 * 119.99642 * 179.97438 * 17 16 14 19 19 C 1.38261 * 120.22092 * 359.74344 * 18 17 16 20 20 C 1.38948 * 120.22108 * 0.51521 * 19 18 17 21 21 N 1.39982 * 119.99449 * 179.76475 * 20 19 18 22 22 C 1.47087 * 125.56227 * 359.72392 * 21 20 19 23 23 C 1.54085 * 103.90986 * 180.02562 * 22 21 20 24 24 O 1.45700 * 104.01109 * 359.92530 * 23 22 21 25 25 C 1.33780 * 109.47458 * 359.97438 * 24 23 22 26 26 O 1.21511 * 123.07482 * 179.97438 * 25 24 23 27 27 C 1.38629 * 120.00039 * 359.48725 * 20 19 18 28 28 H 1.09010 * 109.46604 * 300.00149 * 1 2 3 29 29 H 1.08994 * 109.47148 * 59.99851 * 1 2 3 30 30 H 1.09001 * 109.47446 * 180.02562 * 1 2 3 31 31 H 0.97002 * 120.00186 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46617 * 274.62443 * 13 12 2 33 33 H 1.09006 * 109.47781 * 34.62335 * 13 12 2 34 34 H 1.09003 * 109.47258 * 154.62773 * 13 12 2 35 35 H 1.07998 * 120.00190 * 359.97438 * 17 16 14 36 36 H 1.08000 * 119.89149 * 180.02562 * 18 17 16 37 37 H 1.07992 * 119.88982 * 180.26077 * 19 18 17 38 38 H 1.09003 * 110.56559 * 61.39458 * 22 21 20 39 39 H 1.09002 * 110.56602 * 298.68763 * 22 21 20 40 40 H 1.09000 * 110.52462 * 118.56012 * 23 22 21 41 41 H 1.09003 * 110.52043 * 241.29335 * 23 22 21 42 42 H 1.08004 * 120.10507 * 180.23245 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6994 -0.2393 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.6306 -0.5439 4.4117 10 1 1.3447 -0.9489 5.1123 11 1 2.4881 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7930 -0.0357 -2.0834 15 8 3.1516 1.1027 -1.8532 16 6 3.2069 -0.7020 -3.3368 17 6 3.4128 -2.0826 -3.3612 18 6 3.7985 -2.7020 -4.5323 19 6 3.9773 -1.9605 -5.6855 20 6 3.7801 -0.5852 -5.6703 21 7 3.9673 0.1616 -6.8394 22 6 4.3755 -0.3803 -8.1444 23 6 4.4280 0.8581 -9.0597 24 8 4.0459 1.9593 -8.1855 25 6 3.8016 1.4894 -6.9570 26 8 3.4635 2.1993 -6.0306 27 6 3.3926 0.0466 -4.4987 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 0.7083 1.1610 3.4844 32 1 2.3694 -2.7374 -0.9027 33 1 0.6562 -2.2796 -1.0574 34 1 1.7038 -2.3062 -2.4963 35 1 3.2701 -2.6658 -2.4635 36 1 3.9569 -3.7702 -4.5494 37 1 4.2752 -2.4513 -6.6001 38 1 3.6382 -1.0952 -8.5098 39 1 5.3581 -0.8471 -8.0748 40 1 5.4373 1.0073 -9.4434 41 1 3.7174 0.7573 -9.8801 42 1 3.2352 1.1150 -4.4859 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103441901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:04 Heat of formation + Delta-G solvation = -67.607566 kcal Electronic energy + Delta-G solvation = -26625.100579 eV Core-core repulsion = 22763.990169 eV Total energy + Delta-G solvation = -3861.110410 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.98276 -41.36435 -39.57410 -38.60517 -37.27161 -36.64718 -34.87116 -32.51835 -32.05192 -30.86520 -29.97364 -27.91172 -27.34078 -25.67642 -24.93781 -24.22339 -22.40513 -22.16073 -20.49227 -19.18691 -18.51360 -18.47884 -18.22129 -17.62094 -17.35077 -17.02695 -16.49203 -16.29482 -16.01151 -15.48806 -15.21086 -15.05233 -14.97430 -14.79434 -14.54291 -14.47315 -14.12144 -13.59305 -13.52324 -13.32159 -13.21380 -12.97198 -12.86190 -12.77403 -12.74269 -12.28442 -12.12228 -12.10130 -11.87050 -11.47388 -11.21811 -11.20687 -10.76771 -10.53953 -10.03459 -9.39461 -9.08778 -8.16015 -6.33775 -0.12451 0.22588 1.11894 1.40575 1.43094 1.43665 1.53224 1.88803 2.22084 2.42158 2.47539 2.80152 3.11800 3.23998 3.39869 3.66815 3.96028 4.02033 4.08570 4.17608 4.31017 4.42335 4.45295 4.52910 4.64915 4.70190 4.71463 4.72625 4.82410 4.91243 4.97934 4.99846 5.22636 5.29276 5.33523 5.41576 5.43600 5.58738 5.63064 5.89881 5.99670 6.11656 6.17405 6.69925 6.72385 6.74209 7.24309 7.41233 8.89089 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025598 B = 0.003021 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.571414 B = 9266.986000 C = 9876.285630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.259 3.741 3 H 0.001 0.999 4 C -0.538 4.538 5 H 0.066 0.934 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.971 3.029 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.256 1.256 12 N -0.589 5.589 13 C 0.065 3.935 14 C 0.528 3.472 15 O -0.609 6.609 16 C -0.113 4.113 17 C -0.122 4.122 18 C -0.078 4.078 19 C -0.109 4.109 20 C 0.165 3.835 21 N -0.568 5.568 22 C 0.054 3.946 23 C 0.033 3.967 24 O -0.339 6.339 25 C 0.631 3.369 26 O -0.559 6.559 27 C -0.139 4.139 28 H 0.070 0.930 29 H 0.014 0.986 30 H 0.055 0.945 31 H 0.265 0.735 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.159 0.841 36 H 0.188 0.812 37 H 0.185 0.815 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.168 -15.876 -27.874 32.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.019 0.981 4 C -0.576 4.576 5 H 0.084 0.916 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.796 3.204 9 H -0.210 1.210 10 H -0.205 1.205 11 H -0.179 1.179 12 N -0.318 5.318 13 C -0.076 4.076 14 C 0.318 3.682 15 O -0.492 6.492 16 C -0.117 4.117 17 C -0.141 4.141 18 C -0.096 4.096 19 C -0.129 4.129 20 C 0.072 3.928 21 N -0.306 5.306 22 C -0.065 4.065 23 C -0.040 4.040 24 O -0.248 6.248 25 C 0.387 3.613 26 O -0.447 6.447 27 C -0.160 4.160 28 H 0.089 0.911 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.177 0.823 36 H 0.205 0.795 37 H 0.202 0.798 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.159 0.841 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.056 -14.553 -27.313 31.742 hybrid contribution 0.005 0.998 1.449 1.759 sum 7.061 -13.555 -25.864 30.042 Atomic orbital electron populations 1.21887 0.96869 1.00486 0.99856 1.18604 0.91808 0.92060 0.81766 0.98078 1.21556 1.32053 1.13196 0.90818 0.91603 1.25840 0.94996 0.95674 1.02306 1.70044 1.37326 1.24067 1.24522 0.85359 0.77627 0.79363 0.78084 1.21012 1.20457 1.17929 1.48136 1.48024 1.13670 1.21934 1.22541 1.01937 0.80149 1.02981 1.19168 0.78849 0.85535 0.84668 1.90703 1.58137 1.21448 1.78928 1.19685 1.04462 0.95703 0.91837 1.22174 0.98456 0.91495 1.01940 1.21466 0.95990 1.02227 0.89923 1.21374 1.01112 0.88741 1.01707 1.17334 1.00735 0.91776 0.82956 1.45529 1.67197 1.06259 1.11571 1.23537 1.06249 0.98230 0.78527 1.24974 1.06613 0.80062 0.92317 1.87316 1.81345 1.36614 1.19572 1.18929 0.76910 0.82410 0.83058 1.91031 1.52337 1.62542 1.38761 1.21347 1.01469 1.01107 0.92074 0.91094 0.96653 0.92653 0.92596 0.91025 0.91080 0.87482 0.82331 0.79498 0.79829 0.84671 0.84883 0.84275 0.84118 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.86 8.94 71.98 0.64 -6.22 16 2 C 0.26 14.66 2.63 44.24 0.12 14.78 16 3 H 0.00 0.08 6.91 -2.39 -0.02 0.07 16 4 C -0.54 -30.60 8.37 25.60 0.21 -30.39 16 5 H 0.07 3.57 7.52 -2.91 -0.02 3.54 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -55.52 11.32 21.45 0.24 -55.27 16 8 Si 0.97 44.22 29.54 68.60 2.03 46.24 16 9 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 12 N -0.59 -27.75 2.75 -830.20 -2.29 -30.04 16 13 C 0.06 2.15 8.08 127.77 1.03 3.19 16 14 C 0.53 26.28 7.44 86.79 0.65 26.93 16 15 O -0.61 -37.49 16.09 -3.88 -0.06 -37.55 16 16 C -0.11 -4.21 5.47 -20.10 -0.11 -4.32 16 17 C -0.12 -2.99 7.43 22.54 0.17 -2.82 16 18 C -0.08 -1.10 10.02 22.21 0.22 -0.88 16 19 C -0.11 -1.48 9.49 22.45 0.21 -1.26 16 20 C 0.16 4.04 6.63 38.10 0.25 4.29 16 21 N -0.57 -11.65 3.17 -759.27 -2.41 -14.06 16 22 C 0.05 0.23 6.46 86.63 0.56 0.79 16 23 C 0.03 0.15 8.23 72.35 0.60 0.75 16 24 O -0.34 -7.25 11.09 -47.40 -0.53 -7.78 16 25 C 0.63 18.68 8.78 129.86 1.14 19.82 16 26 O -0.56 -24.08 14.77 19.65 0.29 -23.79 16 27 C -0.14 -5.17 8.87 22.66 0.20 -4.97 16 28 H 0.07 4.02 6.07 -2.38 -0.01 4.01 16 29 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 2.53 6.69 -2.39 -0.02 2.52 16 31 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.07 2.14 7.30 -2.39 -0.02 2.12 16 33 H 0.07 2.32 6.45 -2.38 -0.02 2.31 16 34 H 0.11 2.77 4.71 -2.39 -0.01 2.76 16 35 H 0.16 3.52 4.81 -2.91 -0.01 3.50 16 36 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.18 0.45 7.29 -2.91 -0.02 0.43 16 38 H 0.14 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.13 -0.22 8.14 -2.39 -0.02 -0.23 16 40 H 0.14 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.14 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.11 5.46 5.15 -2.91 -0.01 5.45 16 Total: -1.00 -98.63 342.18 4.69 -93.94 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.07 Total: 7.55 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 6.34 Total: 20.76 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -4.45 Total: -99.37 kcal Atomic # 8 Polarization: -68.82 SS G_CDS: -0.30 Total: -69.12 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -98.63 4.69 -93.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103441901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.333 kcal (2) G-P(sol) polarization free energy of solvation -98.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds