Wall clock time and date at job start Tue Mar 31 2020 12:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47081 * 2 1 4 4 C 1.50700 * 109.47237 * 120.00052 * 2 1 3 5 5 H 1.08006 * 119.99642 * 120.00374 * 4 2 1 6 6 C 1.37876 * 120.00024 * 299.99817 * 4 2 1 7 7 N 1.31516 * 119.99972 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99798 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47120 * 269.99849 * 8 6 4 10 10 H 1.48496 * 109.47171 * 30.00037 * 8 6 4 11 11 H 1.48497 * 109.47000 * 150.00448 * 8 6 4 12 12 N 1.46506 * 109.47038 * 239.99994 * 2 1 3 13 13 C 1.46498 * 120.00052 * 306.27389 * 12 2 1 14 14 C 1.34773 * 119.99966 * 126.27213 * 12 2 1 15 15 O 1.21280 * 120.00196 * 184.15661 * 14 12 2 16 16 C 1.50706 * 119.99938 * 4.16340 * 14 12 2 17 17 C 1.53039 * 109.45859 * 281.56094 * 16 14 12 18 18 C 1.53195 * 109.31374 * 178.61417 * 17 16 14 19 19 N 1.46930 * 108.77007 * 54.63344 * 18 17 16 20 20 S 1.65605 * 120.62443 * 126.41475 * 19 18 17 21 21 C 1.81397 * 104.45055 * 269.97331 * 20 19 18 22 22 O 1.42102 * 104.28097 * 26.05000 * 20 19 18 23 23 O 1.42105 * 104.27323 * 153.90448 * 20 19 18 24 24 C 1.46921 * 118.74419 * 306.38934 * 19 18 17 25 25 C 1.53046 * 109.45980 * 161.49577 * 16 14 12 26 26 H 1.09001 * 109.47258 * 299.99502 * 1 2 3 27 27 H 1.08997 * 109.47575 * 60.00021 * 1 2 3 28 28 H 1.09002 * 109.47081 * 179.97438 * 1 2 3 29 29 H 0.96992 * 119.99991 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46853 * 94.75018 * 13 12 2 31 31 H 1.08997 * 109.47346 * 214.74900 * 13 12 2 32 32 H 1.09005 * 109.47289 * 334.75670 * 13 12 2 33 33 H 1.08998 * 109.45940 * 41.52248 * 16 14 12 34 34 H 1.08998 * 109.49695 * 298.56461 * 17 16 14 35 35 H 1.09000 * 109.49576 * 58.66450 * 17 16 14 36 36 H 1.08993 * 109.58372 * 294.84933 * 18 17 16 37 37 H 1.08999 * 109.70484 * 174.48873 * 18 17 16 38 38 H 1.09002 * 109.46637 * 60.00520 * 21 20 19 39 39 H 1.09000 * 109.47298 * 180.02562 * 21 20 19 40 40 H 1.08994 * 109.47199 * 300.00529 * 21 20 19 41 41 H 1.09001 * 109.58966 * 293.82941 * 24 19 18 42 42 H 1.08991 * 109.58738 * 173.39419 * 24 19 18 43 43 H 1.09000 * 109.49033 * 301.33613 * 25 16 14 44 44 H 1.08991 * 109.49780 * 61.42786 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 1.3449 -2.1616 4.4124 10 1 3.6309 -1.7566 3.7118 11 1 2.4874 -0.1403 5.1120 12 7 2.0183 -0.6906 -1.1962 13 6 1.5548 -2.0468 -1.4996 14 6 2.8940 -0.0783 -2.0176 15 8 3.2403 -0.6190 -3.0465 16 6 3.4428 1.2783 -1.6575 17 6 2.3996 2.3515 -1.9769 18 6 2.9474 3.7253 -1.5775 19 7 4.2437 3.9279 -2.2390 20 16 4.5213 5.2793 -3.1550 21 6 4.0037 4.8064 -4.8280 22 8 3.6390 6.2547 -2.6170 23 8 5.9302 5.4563 -3.1003 24 6 5.2890 2.9091 -2.0718 25 6 4.7149 1.5445 -2.4657 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7088 1.1612 3.4843 30 1 0.7096 -1.9968 -2.1862 31 1 2.3642 -2.6130 -1.9604 32 1 1.2453 -2.5398 -0.5779 33 1 3.6766 1.3046 -0.5932 34 1 2.1837 2.3425 -3.0452 35 1 1.4857 2.1480 -1.4187 36 1 3.0786 3.7661 -0.4963 37 1 2.2517 4.5036 -1.8909 38 1 2.9490 4.5313 -4.8178 39 1 4.1539 5.6465 -5.5060 40 1 4.5974 3.9570 -5.1655 41 1 5.6111 2.8834 -1.0308 42 1 6.1374 3.1474 -2.7133 43 1 5.4489 0.7666 -2.2554 44 1 4.4772 1.5430 -3.5293 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:29 Heat of formation + Delta-G solvation = -107.173640 kcal Electronic energy + Delta-G solvation = -26605.556012 eV Core-core repulsion = 22878.173840 eV Total energy + Delta-G solvation = -3727.382172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.81032 -37.62657 -37.23909 -36.01872 -35.62764 -32.70185 -32.47823 -31.01903 -29.61555 -29.21216 -27.01410 -25.34845 -24.39985 -23.22765 -21.51121 -20.56374 -18.97743 -18.33902 -17.52622 -16.58684 -16.48165 -16.40325 -16.16304 -15.16751 -14.64983 -14.59393 -14.51645 -14.24721 -13.58594 -13.50097 -13.42686 -13.25103 -13.21765 -12.71784 -12.54627 -12.27956 -12.17533 -12.01511 -11.81757 -11.71688 -11.43198 -11.37255 -11.15904 -11.12828 -11.02547 -10.94937 -10.73361 -10.44543 -10.41870 -10.30482 -10.20223 -9.41198 -9.18307 -8.82673 -8.57519 -7.68865 -6.22886 -4.31698 0.16066 2.52632 3.18426 3.26612 3.27972 3.33863 3.77047 3.92191 4.01790 4.28063 4.49573 4.70311 4.77581 5.00722 5.05877 5.08124 5.21745 5.25026 5.48367 5.50038 5.54797 5.77901 5.78947 5.92621 6.00712 6.06819 6.15184 6.16097 6.25501 6.29949 6.41627 6.47594 6.57038 6.62600 6.67284 6.84602 7.15174 7.34749 7.61522 7.81150 8.06676 8.38980 8.71176 8.96796 9.37219 10.81228 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.004156 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.909756 B = 6736.250934 C = 7459.134844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.249 3.751 3 H 0.061 0.939 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.591 5.591 13 C 0.096 3.904 14 C 0.514 3.486 15 O -0.578 6.578 16 C -0.103 4.103 17 C -0.126 4.126 18 C 0.124 3.876 19 N -0.997 5.997 20 S 2.611 3.389 21 C -0.675 4.675 22 O -0.957 6.957 23 O -0.959 6.959 24 C 0.122 3.878 25 C -0.114 4.114 26 H 0.095 0.905 27 H 0.012 0.988 28 H 0.032 0.968 29 H 0.265 0.735 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.431 5.818 -10.380 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.148 3.852 3 H 0.078 0.922 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.321 5.321 13 C -0.047 4.047 14 C 0.301 3.699 15 O -0.460 6.460 16 C -0.124 4.124 17 C -0.166 4.166 18 C -0.001 4.001 19 N -0.835 5.835 20 S 2.704 3.296 21 C -0.825 4.825 22 O -0.947 6.947 23 O -0.949 6.949 24 C -0.003 4.003 25 C -0.153 4.153 26 H 0.114 0.886 27 H 0.031 0.969 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.847 6.473 -10.426 12.861 hybrid contribution -0.178 -1.140 0.504 1.259 sum 3.669 5.333 -9.922 11.847 Atomic orbital electron populations 1.22118 0.97900 1.00009 1.00839 1.19181 0.91541 0.93649 0.80804 0.92166 1.21373 1.32084 1.13379 0.90191 0.92142 1.24867 0.94712 0.94904 0.98964 1.69834 1.36059 1.22514 1.24066 0.86515 0.79323 0.79417 0.82319 1.20598 1.19876 1.21053 1.48285 1.42720 1.15522 1.25526 1.21363 0.98470 0.84216 1.00680 1.20468 0.78924 0.87303 0.83158 1.90578 1.61700 1.67713 1.25969 1.21204 0.95845 0.92492 1.02874 1.21969 0.98893 0.93644 1.02069 1.21476 0.82614 0.97150 0.98832 1.57693 1.21989 1.39860 1.63982 1.04851 0.74396 0.73641 0.76706 1.30610 1.13270 1.12534 1.26065 1.93605 1.67533 1.57405 1.76150 1.93594 1.30027 1.84781 1.86531 1.21492 0.88820 0.86924 1.03041 1.21747 0.96692 0.96258 1.00613 0.88642 0.96878 0.94844 0.92502 0.94321 0.92615 0.90620 0.87543 0.91629 0.89062 0.89882 0.89021 0.85359 0.85836 0.85366 0.90452 0.89180 0.90422 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.87 37.16 0.33 -2.84 16 2 C 0.25 5.38 1.87 -69.08 -0.13 5.25 16 3 H 0.06 1.31 4.41 -51.93 -0.23 1.09 16 4 C -0.53 -12.90 8.11 -34.44 -0.28 -13.18 16 5 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -22.34 11.32 55.43 0.63 -21.72 16 8 Si 0.90 19.64 29.54 -169.99 -5.02 14.62 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 12 N -0.59 -11.87 2.75 -175.26 -0.48 -12.35 16 13 C 0.10 1.78 9.23 59.85 0.55 2.33 16 14 C 0.51 9.91 6.85 -10.98 -0.08 9.84 16 15 O -0.58 -12.25 15.75 5.56 0.09 -12.17 16 16 C -0.10 -1.63 1.62 -91.73 -0.15 -1.78 16 17 C -0.13 -1.76 4.99 -26.61 -0.13 -1.89 16 18 C 0.12 1.54 6.32 -3.71 -0.02 1.51 16 19 N -1.00 -11.53 3.22 -113.53 -0.37 -11.90 16 20 S 2.61 28.41 6.05 -107.50 -0.65 27.76 16 21 C -0.68 -5.00 10.99 101.05 1.11 -3.89 16 22 O -0.96 -13.33 16.72 -57.54 -0.96 -14.29 16 23 O -0.96 -13.06 16.72 -57.54 -0.96 -14.02 16 24 C 0.12 1.41 6.31 -3.71 -0.02 1.38 16 25 C -0.11 -1.52 4.78 -26.61 -0.13 -1.64 16 26 H 0.10 2.22 6.07 -51.93 -0.32 1.90 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.03 0.69 7.36 -51.93 -0.38 0.31 16 29 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.01 7.63 -51.93 -0.40 0.62 16 32 H 0.08 1.40 7.32 -51.93 -0.38 1.02 16 33 H 0.11 1.84 7.06 -51.93 -0.37 1.47 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.39 6.40 -51.93 -0.33 1.06 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.01 7.09 -51.93 -0.37 0.64 16 38 H 0.13 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.12 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 0.90 7.10 -51.93 -0.37 0.53 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.07 0.95 7.96 -51.93 -0.41 0.54 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -31.17 356.45 -8.30 -39.47 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.90 Total: 2.56 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 0.96 Total: -3.32 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.22 Total: -45.97 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -1.84 Total: -40.48 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: 28.41 SS G_CDS: -0.65 Total: 27.76 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.17 -8.30 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.707 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds