Wall clock time and date at job start Tue Mar 31 2020 12:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47081 * 2 1 4 4 C 1.50700 * 109.47237 * 120.00052 * 2 1 3 5 5 H 1.08006 * 119.99642 * 120.00374 * 4 2 1 6 6 C 1.37876 * 120.00024 * 299.99817 * 4 2 1 7 7 N 1.31516 * 119.99972 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99798 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47120 * 269.99849 * 8 6 4 10 10 H 1.48496 * 109.47171 * 30.00037 * 8 6 4 11 11 H 1.48497 * 109.47000 * 150.00448 * 8 6 4 12 12 N 1.46506 * 109.47038 * 239.99994 * 2 1 3 13 13 C 1.46498 * 120.00052 * 306.27389 * 12 2 1 14 14 C 1.34773 * 119.99966 * 126.27213 * 12 2 1 15 15 O 1.21280 * 120.00196 * 184.15661 * 14 12 2 16 16 C 1.50706 * 119.99938 * 4.16340 * 14 12 2 17 17 C 1.53039 * 109.45859 * 281.56094 * 16 14 12 18 18 C 1.53195 * 109.31374 * 178.61417 * 17 16 14 19 19 N 1.46930 * 108.77007 * 54.63344 * 18 17 16 20 20 S 1.65605 * 120.62443 * 126.41475 * 19 18 17 21 21 C 1.81397 * 104.45055 * 269.97331 * 20 19 18 22 22 O 1.42102 * 104.28097 * 26.05000 * 20 19 18 23 23 O 1.42105 * 104.27323 * 153.90448 * 20 19 18 24 24 C 1.46921 * 118.74419 * 306.38934 * 19 18 17 25 25 C 1.53046 * 109.45980 * 161.49577 * 16 14 12 26 26 H 1.09001 * 109.47258 * 299.99502 * 1 2 3 27 27 H 1.08997 * 109.47575 * 60.00021 * 1 2 3 28 28 H 1.09002 * 109.47081 * 179.97438 * 1 2 3 29 29 H 0.96992 * 119.99991 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46853 * 94.75018 * 13 12 2 31 31 H 1.08997 * 109.47346 * 214.74900 * 13 12 2 32 32 H 1.09005 * 109.47289 * 334.75670 * 13 12 2 33 33 H 1.08998 * 109.45940 * 41.52248 * 16 14 12 34 34 H 1.08998 * 109.49695 * 298.56461 * 17 16 14 35 35 H 1.09000 * 109.49576 * 58.66450 * 17 16 14 36 36 H 1.08993 * 109.58372 * 294.84933 * 18 17 16 37 37 H 1.08999 * 109.70484 * 174.48873 * 18 17 16 38 38 H 1.09002 * 109.46637 * 60.00520 * 21 20 19 39 39 H 1.09000 * 109.47298 * 180.02562 * 21 20 19 40 40 H 1.08994 * 109.47199 * 300.00529 * 21 20 19 41 41 H 1.09001 * 109.58966 * 293.82941 * 24 19 18 42 42 H 1.08991 * 109.58738 * 173.39419 * 24 19 18 43 43 H 1.09000 * 109.49033 * 301.33613 * 25 16 14 44 44 H 1.08991 * 109.49780 * 61.42786 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 1.3449 -2.1616 4.4124 10 1 3.6309 -1.7566 3.7118 11 1 2.4874 -0.1403 5.1120 12 7 2.0183 -0.6906 -1.1962 13 6 1.5548 -2.0468 -1.4996 14 6 2.8940 -0.0783 -2.0176 15 8 3.2403 -0.6190 -3.0465 16 6 3.4428 1.2783 -1.6575 17 6 2.3996 2.3515 -1.9769 18 6 2.9474 3.7253 -1.5775 19 7 4.2437 3.9279 -2.2390 20 16 4.5213 5.2793 -3.1550 21 6 4.0037 4.8064 -4.8280 22 8 3.6390 6.2547 -2.6170 23 8 5.9302 5.4563 -3.1003 24 6 5.2890 2.9091 -2.0718 25 6 4.7149 1.5445 -2.4657 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7088 1.1612 3.4843 30 1 0.7096 -1.9968 -2.1862 31 1 2.3642 -2.6130 -1.9604 32 1 1.2453 -2.5398 -0.5779 33 1 3.6766 1.3046 -0.5932 34 1 2.1837 2.3425 -3.0452 35 1 1.4857 2.1480 -1.4187 36 1 3.0786 3.7661 -0.4963 37 1 2.2517 4.5036 -1.8909 38 1 2.9490 4.5313 -4.8178 39 1 4.1539 5.6465 -5.5060 40 1 4.5974 3.9570 -5.1655 41 1 5.6111 2.8834 -1.0308 42 1 6.1374 3.1474 -2.7133 43 1 5.4489 0.7666 -2.2554 44 1 4.4772 1.5430 -3.5293 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:28 Heat of formation + Delta-G solvation = -128.327864 kcal Electronic energy + Delta-G solvation = -26606.473328 eV Core-core repulsion = 22878.173840 eV Total energy + Delta-G solvation = -3728.299488 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.22953 -38.80940 -38.19562 -37.30141 -36.97658 -34.51972 -33.61745 -32.05388 -30.94712 -30.24108 -28.42450 -27.21063 -25.61000 -24.27540 -23.15977 -21.71521 -20.06357 -19.56198 -18.70399 -18.29801 -17.98979 -17.27696 -17.09547 -16.82385 -16.18112 -16.08915 -15.56926 -15.36823 -14.94662 -14.60483 -14.50583 -14.33408 -14.04796 -13.92133 -13.71094 -13.58124 -13.36128 -13.33425 -13.13791 -12.99144 -12.86672 -12.82573 -12.71972 -12.56632 -12.38675 -12.21834 -12.12289 -12.00554 -11.83618 -11.57143 -11.50333 -11.18022 -10.58928 -10.44857 -9.91573 -9.33507 -8.11513 -6.25272 -0.66222 1.42764 1.47273 1.53907 1.65443 1.79955 2.36395 2.51672 2.98341 3.16942 3.18578 3.57171 3.74022 3.89242 4.01610 4.12964 4.19145 4.26683 4.37630 4.45753 4.55815 4.67732 4.71110 4.76780 4.82050 4.84730 4.88620 4.96606 4.97757 4.99624 5.04919 5.09480 5.18939 5.27493 5.38070 5.47246 5.61220 5.63270 5.78954 6.03567 6.25345 6.69335 6.89633 7.36027 7.49476 8.90532 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.004156 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.909756 B = 6736.250934 C = 7459.134844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.255 3.745 3 H 0.058 0.942 4 C -0.542 4.542 5 H 0.048 0.952 6 C 0.033 3.967 7 N -0.904 5.904 8 Si 0.946 3.054 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.284 1.284 12 N -0.599 5.599 13 C 0.096 3.904 14 C 0.509 3.491 15 O -0.596 6.596 16 C -0.101 4.101 17 C -0.120 4.120 18 C 0.129 3.871 19 N -1.000 6.000 20 S 2.617 3.383 21 C -0.654 4.654 22 O -0.992 6.992 23 O -0.990 6.990 24 C 0.125 3.875 25 C -0.106 4.106 26 H 0.074 0.926 27 H 0.030 0.970 28 H 0.031 0.969 29 H 0.265 0.735 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.072 0.928 42 H 0.110 0.890 43 H 0.072 0.928 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.546 6.139 -11.867 13.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.154 3.846 3 H 0.076 0.924 4 C -0.581 4.581 5 H 0.066 0.934 6 C -0.168 4.168 7 N -0.542 5.542 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.209 1.209 12 N -0.328 5.328 13 C -0.047 4.047 14 C 0.298 3.702 15 O -0.479 6.479 16 C -0.122 4.122 17 C -0.159 4.159 18 C 0.003 3.997 19 N -0.837 5.837 20 S 2.715 3.285 21 C -0.808 4.808 22 O -0.983 6.983 23 O -0.981 6.981 24 C 0.000 4.000 25 C -0.146 4.146 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.090 0.910 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.975 6.799 -11.875 14.249 hybrid contribution -0.220 -1.278 0.889 1.572 sum 3.755 5.521 -10.985 12.855 Atomic orbital electron populations 1.21952 0.97417 0.99815 1.00630 1.18994 0.91766 0.93337 0.80534 0.92420 1.21559 1.31909 1.13097 0.91504 0.93420 1.25402 0.94995 0.95497 1.00945 1.69917 1.36668 1.23233 1.24423 0.85737 0.78628 0.78490 0.79826 1.20395 1.20144 1.20928 1.48336 1.43154 1.16078 1.25234 1.21406 0.98947 0.83610 1.00768 1.21026 0.78268 0.88221 0.82638 1.90558 1.62204 1.68472 1.26711 1.21224 0.97538 0.91297 1.02146 1.21911 0.97552 0.93625 1.02801 1.21374 0.83365 0.96689 0.98231 1.57630 1.21523 1.39705 1.64863 1.04510 0.73253 0.72818 0.77935 1.30399 1.14340 1.14096 1.21921 1.93559 1.67948 1.58834 1.77939 1.93551 1.31856 1.85146 1.87553 1.21482 0.89241 0.85982 1.03292 1.21709 0.95239 0.97120 1.00503 0.90714 0.95092 0.94956 0.92528 0.92906 0.92609 0.91050 0.89458 0.89975 0.90655 0.91318 0.87465 0.83824 0.83524 0.83707 0.90960 0.87236 0.90922 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.85 8.87 71.98 0.64 -5.21 16 2 C 0.25 11.03 1.87 44.24 0.08 11.11 16 3 H 0.06 2.55 4.41 -2.39 -0.01 2.53 16 4 C -0.54 -26.46 8.11 25.60 0.21 -26.25 16 5 H 0.05 2.41 7.81 -2.91 -0.02 2.38 16 6 C 0.03 1.61 5.30 84.65 0.45 2.06 16 7 N -0.90 -45.69 11.32 21.45 0.24 -45.45 16 8 Si 0.95 40.26 29.54 68.60 2.03 42.28 16 9 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 N -0.60 -23.84 2.75 -826.78 -2.28 -26.12 16 13 C 0.10 3.49 9.23 127.77 1.18 4.67 16 14 C 0.51 19.34 6.85 87.66 0.60 19.94 16 15 O -0.60 -24.67 15.75 -3.03 -0.05 -24.71 16 16 C -0.10 -3.15 1.62 -11.51 -0.02 -3.17 16 17 C -0.12 -3.19 4.99 30.67 0.15 -3.04 16 18 C 0.13 3.07 6.32 86.36 0.55 3.61 16 19 N -1.00 -21.69 3.22 -513.08 -1.65 -23.34 16 20 S 2.62 52.18 6.05 -56.49 -0.34 51.83 16 21 C -0.65 -7.07 10.99 113.37 1.25 -5.82 16 22 O -0.99 -26.56 16.72 -127.65 -2.13 -28.69 16 23 O -0.99 -25.62 16.72 -127.65 -2.13 -27.76 16 24 C 0.13 2.72 6.31 86.36 0.55 3.26 16 25 C -0.11 -2.70 4.78 30.67 0.15 -2.55 16 26 H 0.07 3.48 6.07 -2.39 -0.01 3.46 16 27 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.03 1.31 7.36 -2.39 -0.02 1.29 16 29 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.00 7.63 -2.39 -0.02 1.99 16 32 H 0.07 2.62 7.32 -2.38 -0.02 2.60 16 33 H 0.09 3.07 7.06 -2.39 -0.02 3.05 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 2.26 6.40 -2.39 -0.02 2.25 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.11 2.22 7.09 -2.39 -0.02 2.21 16 38 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.15 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.11 1.98 7.10 -2.39 -0.02 1.96 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.08 1.92 7.96 -2.39 -0.02 1.90 16 Total: -1.00 -65.74 356.45 0.45 -65.29 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.99 Total: 18.04 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 5.78 Total: -1.37 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -3.69 Total: -94.91 kcal Atomic # 8 Polarization: -76.85 SS G_CDS: -4.32 Total: -81.16 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.28 kcal Atomic # 16 Polarization: 52.18 SS G_CDS: -0.34 Total: 51.83 kcal Total: -65.74 0.45 -65.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.039 kcal (2) G-P(sol) polarization free energy of solvation -65.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds