Wall clock time and date at job start Tue Mar 31 2020 12:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47360 * 2 1 4 4 C 1.50705 * 109.47081 * 239.99863 * 2 1 3 5 5 H 1.07995 * 120.00095 * 239.99454 * 4 2 1 6 6 C 1.37879 * 119.99804 * 60.00346 * 4 2 1 7 7 N 1.31520 * 120.00144 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00312 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47275 * 89.99328 * 8 6 4 10 10 H 1.48501 * 109.47447 * 209.99857 * 8 6 4 11 11 H 1.48500 * 109.46856 * 330.00056 * 8 6 4 12 12 N 1.46496 * 109.47536 * 120.00228 * 2 1 3 13 13 C 1.46500 * 120.00128 * 59.99609 * 12 2 1 14 14 C 1.34774 * 120.00140 * 240.00151 * 12 2 1 15 15 O 1.21282 * 119.99971 * 359.97438 * 14 12 2 16 16 C 1.50706 * 120.00164 * 179.97438 * 14 12 2 17 17 C 1.53038 * 109.45901 * 300.03229 * 16 14 12 18 18 C 1.53201 * 109.30890 * 178.60152 * 17 16 14 19 19 N 1.46927 * 108.76745 * 54.64953 * 18 17 16 20 20 S 1.65602 * 120.62687 * 126.40328 * 19 18 17 21 21 C 1.81390 * 104.45134 * 269.97914 * 20 19 18 22 22 O 1.42094 * 104.27643 * 26.05366 * 20 19 18 23 23 O 1.42105 * 104.27228 * 153.90739 * 20 19 18 24 24 C 1.46922 * 118.73644 * 306.38742 * 19 18 17 25 25 C 1.53039 * 109.46108 * 179.97438 * 16 14 12 26 26 H 1.08995 * 109.46867 * 299.99928 * 1 2 3 27 27 H 1.09002 * 109.47144 * 59.99969 * 1 2 3 28 28 H 1.08998 * 109.46710 * 179.97438 * 1 2 3 29 29 H 0.96994 * 120.00434 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.47345 * 270.00953 * 13 12 2 31 31 H 1.08997 * 109.47120 * 30.00419 * 13 12 2 32 32 H 1.09001 * 109.47355 * 150.00615 * 13 12 2 33 33 H 1.09004 * 109.45785 * 59.99892 * 16 14 12 34 34 H 1.08998 * 109.49551 * 298.55919 * 17 16 14 35 35 H 1.08994 * 109.50464 * 58.66198 * 17 16 14 36 36 H 1.08998 * 109.59481 * 294.86272 * 18 17 16 37 37 H 1.08995 * 109.69954 * 174.50375 * 18 17 16 38 38 H 1.09000 * 109.47476 * 60.00400 * 21 20 19 39 39 H 1.08999 * 109.47282 * 180.02562 * 21 20 19 40 40 H 1.09006 * 109.47563 * 299.99981 * 21 20 19 41 41 H 1.09000 * 109.58579 * 293.81448 * 24 19 18 42 42 H 1.09009 * 109.58089 * 173.39606 * 24 19 18 43 43 H 1.08997 * 109.50134 * 301.34132 * 25 16 14 44 44 H 1.09003 * 109.49617 * 61.43539 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3448 -2.1615 -4.4124 10 1 2.4872 -0.1401 -5.1121 11 1 3.6308 -1.7565 -3.7120 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0866 1.1254 1.8911 16 6 3.2953 -0.7460 3.3140 17 6 2.1045 -1.2270 4.1463 18 6 2.6183 -1.9788 5.3783 19 7 3.5520 -1.1094 6.1072 20 16 3.3337 -0.8011 7.7196 21 6 2.2872 0.6799 7.7597 22 8 2.6175 -1.9310 8.1986 23 8 4.6379 -0.5033 8.1990 24 6 4.6830 -0.5192 5.3784 25 6 4.1460 0.2159 4.1465 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7082 1.1609 -3.4844 30 1 0.7376 -2.1444 1.9992 31 1 1.5296 -2.5969 0.4708 32 1 2.4630 -2.5819 1.9863 33 1 3.9006 -1.6025 3.0173 34 1 1.5125 -0.3688 4.4643 35 1 1.4861 -1.8936 3.5453 36 1 3.1337 -2.8864 5.0641 37 1 1.7809 -2.2395 6.0253 38 1 1.3442 0.4723 7.2539 39 1 2.0909 0.9582 8.7951 40 1 2.7979 1.4996 7.2541 41 1 5.3668 -1.3078 5.0643 42 1 5.2066 0.1852 6.0250 43 1 4.9808 0.5766 3.5455 44 1 3.5346 1.0604 4.4644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:33 Heat of formation + Delta-G solvation = -101.180335 kcal Electronic energy + Delta-G solvation = -26159.716234 eV Core-core repulsion = 22432.593951 eV Total energy + Delta-G solvation = -3727.122283 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.92227 -37.76257 -37.40695 -36.18629 -35.41449 -33.30539 -32.27657 -31.21331 -29.73882 -29.29860 -26.35691 -25.34915 -25.12037 -23.43387 -21.65202 -20.40618 -19.10615 -18.49586 -17.74050 -16.67449 -16.56941 -16.36653 -16.18342 -15.43917 -14.82814 -14.68185 -14.63410 -14.33794 -13.69139 -13.64941 -13.53521 -13.39754 -13.24513 -12.69556 -12.55064 -12.43329 -12.32963 -12.21296 -12.00592 -11.68567 -11.64398 -11.52703 -11.26761 -11.15213 -11.06930 -10.89859 -10.78949 -10.63232 -10.44965 -10.29366 -10.20072 -9.33002 -9.20469 -8.82736 -8.45839 -7.62446 -6.10936 -4.19142 0.00007 2.34635 3.23309 3.30219 3.32048 3.35788 3.60579 3.86270 3.89417 4.31433 4.36661 4.54826 4.62800 4.73444 4.85081 5.00039 5.01952 5.20374 5.22743 5.30196 5.39820 5.52440 5.54546 5.60470 5.67461 5.75807 5.84093 5.93544 6.02663 6.11791 6.28580 6.34254 6.43299 6.71167 6.78854 7.02514 7.38465 7.50151 7.68181 7.97959 8.16536 8.50136 8.79692 9.02787 9.47677 10.94303 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031969 B = 0.002990 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.629359 B = 9363.059223 C = 9399.913348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.592 5.592 13 C 0.081 3.919 14 C 0.506 3.494 15 O -0.554 6.554 16 C -0.104 4.104 17 C -0.141 4.141 18 C 0.124 3.876 19 N -0.999 5.999 20 S 2.612 3.388 21 C -0.675 4.675 22 O -0.958 6.958 23 O -0.958 6.958 24 C 0.122 3.878 25 C -0.114 4.114 26 H 0.010 0.990 27 H 0.092 0.908 28 H 0.029 0.971 29 H 0.263 0.737 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -4.599 18.118 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.322 5.322 13 C -0.063 4.063 14 C 0.293 3.707 15 O -0.433 6.433 16 C -0.126 4.126 17 C -0.180 4.180 18 C -0.001 4.001 19 N -0.837 5.837 20 S 2.705 3.295 21 C -0.824 4.824 22 O -0.948 6.948 23 O -0.948 6.948 24 C -0.003 4.003 25 C -0.154 4.154 26 H 0.029 0.971 27 H 0.111 0.889 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.174 -4.369 18.563 19.193 hybrid contribution -0.223 0.045 -1.358 1.377 sum 1.951 -4.324 17.205 17.847 Atomic orbital electron populations 1.22075 0.98253 0.99343 1.00717 1.18925 0.90813 0.94509 0.80037 0.91995 1.21317 1.31850 1.13008 0.90331 0.92265 1.24898 0.94944 0.94953 0.98994 1.69876 1.36334 1.22577 1.23784 0.86496 0.79188 0.79294 0.82407 1.20618 1.21109 1.19931 1.48218 1.48960 1.11504 1.23546 1.21741 0.98655 0.83568 1.02293 1.20369 0.79162 0.87084 0.84101 1.90643 1.58397 1.17231 1.76986 1.21238 0.97678 0.99561 0.94108 1.22238 0.97592 1.01611 0.96574 1.21460 0.92374 0.92612 0.93633 1.57738 1.36610 1.60792 1.28552 1.04841 0.75309 0.76492 0.72883 1.30599 1.17521 1.23213 1.11097 1.93599 1.75628 1.46911 1.78693 1.93602 1.36221 1.86297 1.78673 1.21518 0.87130 0.97777 0.93876 1.21740 1.00471 0.97701 0.95460 0.97133 0.88906 0.95190 0.92673 0.93607 0.90233 0.92524 0.88783 0.91134 0.88746 0.90544 0.88975 0.85315 0.85689 0.85239 0.90683 0.89003 0.89768 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.97 37.16 0.33 -3.03 16 2 C 0.26 6.35 2.64 -69.08 -0.18 6.17 16 3 H 0.06 1.80 6.90 -51.93 -0.36 1.44 16 4 C -0.53 -13.83 7.99 -34.44 -0.28 -14.11 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.70 11.32 55.43 0.63 -24.08 16 8 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.59 -11.75 2.75 -175.26 -0.48 -12.24 16 13 C 0.08 1.23 7.80 59.85 0.47 1.70 16 14 C 0.51 9.61 7.08 -10.98 -0.08 9.53 16 15 O -0.55 -12.86 15.31 5.56 0.09 -12.77 16 16 C -0.10 -1.35 1.68 -91.73 -0.15 -1.50 16 17 C -0.14 -1.45 5.00 -26.61 -0.13 -1.58 16 18 C 0.12 1.06 6.32 -3.71 -0.02 1.04 16 19 N -1.00 -8.98 3.22 -113.52 -0.37 -9.34 16 20 S 2.61 23.50 6.05 -107.50 -0.65 22.84 16 21 C -0.67 -4.15 10.99 101.05 1.11 -3.04 16 22 O -0.96 -11.30 16.72 -57.54 -0.96 -12.27 16 23 O -0.96 -11.50 16.72 -57.54 -0.96 -12.46 16 24 C 0.12 1.13 6.31 -3.72 -0.02 1.10 16 25 C -0.11 -1.33 4.65 -26.62 -0.12 -1.46 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 28 H 0.03 0.63 7.67 -51.93 -0.40 0.24 16 29 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.05 0.60 6.92 -51.93 -0.36 0.24 16 31 H 0.08 1.33 7.02 -51.93 -0.36 0.96 16 32 H 0.06 0.68 6.02 -51.93 -0.31 0.37 16 33 H 0.09 1.10 7.40 -51.93 -0.38 0.72 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.93 4.50 -51.93 -0.23 0.70 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.70 7.09 -51.93 -0.37 0.33 16 38 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 39 H 0.12 0.59 8.14 -51.92 -0.42 0.17 16 40 H 0.13 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 0.77 7.10 -51.92 -0.37 0.40 16 43 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 44 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -34.93 353.22 -8.37 -43.30 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.78 Total: -0.38 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 0.82 Total: -3.55 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.22 Total: -45.66 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -1.84 Total: -37.50 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 23.50 SS G_CDS: -0.65 Total: 22.84 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.93 -8.37 -43.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.879 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds