Wall clock time and date at job start Tue Mar 31 2020 12:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47360 * 2 1 4 4 C 1.50705 * 109.47081 * 239.99863 * 2 1 3 5 5 H 1.07995 * 120.00095 * 239.99454 * 4 2 1 6 6 C 1.37879 * 119.99804 * 60.00346 * 4 2 1 7 7 N 1.31520 * 120.00144 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00312 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47275 * 89.99328 * 8 6 4 10 10 H 1.48501 * 109.47447 * 209.99857 * 8 6 4 11 11 H 1.48500 * 109.46856 * 330.00056 * 8 6 4 12 12 N 1.46496 * 109.47536 * 120.00228 * 2 1 3 13 13 C 1.46500 * 120.00128 * 59.99609 * 12 2 1 14 14 C 1.34774 * 120.00140 * 240.00151 * 12 2 1 15 15 O 1.21282 * 119.99971 * 359.97438 * 14 12 2 16 16 C 1.50706 * 120.00164 * 179.97438 * 14 12 2 17 17 C 1.53038 * 109.45901 * 300.03229 * 16 14 12 18 18 C 1.53201 * 109.30890 * 178.60152 * 17 16 14 19 19 N 1.46927 * 108.76745 * 54.64953 * 18 17 16 20 20 S 1.65602 * 120.62687 * 126.40328 * 19 18 17 21 21 C 1.81390 * 104.45134 * 269.97914 * 20 19 18 22 22 O 1.42094 * 104.27643 * 26.05366 * 20 19 18 23 23 O 1.42105 * 104.27228 * 153.90739 * 20 19 18 24 24 C 1.46922 * 118.73644 * 306.38742 * 19 18 17 25 25 C 1.53039 * 109.46108 * 179.97438 * 16 14 12 26 26 H 1.08995 * 109.46867 * 299.99928 * 1 2 3 27 27 H 1.09002 * 109.47144 * 59.99969 * 1 2 3 28 28 H 1.08998 * 109.46710 * 179.97438 * 1 2 3 29 29 H 0.96994 * 120.00434 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.47345 * 270.00953 * 13 12 2 31 31 H 1.08997 * 109.47120 * 30.00419 * 13 12 2 32 32 H 1.09001 * 109.47355 * 150.00615 * 13 12 2 33 33 H 1.09004 * 109.45785 * 59.99892 * 16 14 12 34 34 H 1.08998 * 109.49551 * 298.55919 * 17 16 14 35 35 H 1.08994 * 109.50464 * 58.66198 * 17 16 14 36 36 H 1.08998 * 109.59481 * 294.86272 * 18 17 16 37 37 H 1.08995 * 109.69954 * 174.50375 * 18 17 16 38 38 H 1.09000 * 109.47476 * 60.00400 * 21 20 19 39 39 H 1.08999 * 109.47282 * 180.02562 * 21 20 19 40 40 H 1.09006 * 109.47563 * 299.99981 * 21 20 19 41 41 H 1.09000 * 109.58579 * 293.81448 * 24 19 18 42 42 H 1.09009 * 109.58089 * 173.39606 * 24 19 18 43 43 H 1.08997 * 109.50134 * 301.34132 * 25 16 14 44 44 H 1.09003 * 109.49617 * 61.43539 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.3448 -2.1615 -4.4124 10 1 2.4872 -0.1401 -5.1121 11 1 3.6308 -1.7565 -3.7120 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0866 1.1254 1.8911 16 6 3.2953 -0.7460 3.3140 17 6 2.1045 -1.2270 4.1463 18 6 2.6183 -1.9788 5.3783 19 7 3.5520 -1.1094 6.1072 20 16 3.3337 -0.8011 7.7196 21 6 2.2872 0.6799 7.7597 22 8 2.6175 -1.9310 8.1986 23 8 4.6379 -0.5033 8.1990 24 6 4.6830 -0.5192 5.3784 25 6 4.1460 0.2159 4.1465 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7082 1.1609 -3.4844 30 1 0.7376 -2.1444 1.9992 31 1 1.5296 -2.5969 0.4708 32 1 2.4630 -2.5819 1.9863 33 1 3.9006 -1.6025 3.0173 34 1 1.5125 -0.3688 4.4643 35 1 1.4861 -1.8936 3.5453 36 1 3.1337 -2.8864 5.0641 37 1 1.7809 -2.2395 6.0253 38 1 1.3442 0.4723 7.2539 39 1 2.0909 0.9582 8.7951 40 1 2.7979 1.4996 7.2541 41 1 5.3668 -1.3078 5.0643 42 1 5.2066 0.1852 6.0250 43 1 4.9808 0.5766 3.5455 44 1 3.5346 1.0604 4.4644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:32 Heat of formation + Delta-G solvation = -127.124463 kcal Electronic energy + Delta-G solvation = -26160.841256 eV Core-core repulsion = 22432.593951 eV Total energy + Delta-G solvation = -3728.247305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.22173 -38.83301 -38.20162 -37.11248 -36.98245 -34.94187 -33.53621 -32.07771 -31.00947 -30.25334 -27.67767 -27.29663 -26.26529 -24.25568 -23.07015 -21.54389 -20.08883 -19.63555 -18.64946 -18.43384 -17.80153 -17.26523 -17.11094 -17.06492 -16.23578 -15.95524 -15.55723 -15.43507 -14.80151 -14.63147 -14.52986 -14.25480 -14.07347 -13.94828 -13.66217 -13.53950 -13.49338 -13.35464 -13.14853 -13.01141 -12.89629 -12.75457 -12.67921 -12.60989 -12.43027 -12.18772 -12.11788 -12.04573 -11.92782 -11.54056 -11.41280 -11.16512 -10.59446 -10.40848 -9.88991 -9.26173 -8.13735 -6.30142 -0.66577 1.41482 1.43284 1.52749 1.66899 1.88215 2.34466 2.53932 2.96024 3.14305 3.18866 3.56422 3.75841 3.85051 4.00295 4.11794 4.17071 4.26176 4.33161 4.46366 4.56141 4.67601 4.72242 4.81179 4.84306 4.85395 4.87347 4.93236 4.96381 5.00800 5.09611 5.11065 5.27751 5.30266 5.40229 5.50426 5.64135 5.66879 5.70117 6.07317 6.18988 6.78865 6.91374 7.35233 7.54830 8.90292 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.031969 B = 0.002990 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.629359 B = 9363.059223 C = 9399.913348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.261 3.739 3 H 0.006 0.994 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.268 1.268 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.599 5.599 13 C 0.076 3.924 14 C 0.496 3.504 15 O -0.607 6.607 16 C -0.093 4.093 17 C -0.136 4.136 18 C 0.125 3.875 19 N -1.001 6.001 20 S 2.623 3.377 21 C -0.662 4.662 22 O -0.987 6.987 23 O -0.992 6.992 24 C 0.129 3.871 25 C -0.111 4.111 26 H 0.020 0.980 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.263 0.737 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.068 0.932 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.611 -6.621 19.368 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.159 3.841 3 H 0.024 0.976 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.214 1.214 11 H -0.195 1.195 12 N -0.329 5.329 13 C -0.066 4.066 14 C 0.285 3.715 15 O -0.490 6.490 16 C -0.114 4.114 17 C -0.175 4.175 18 C 0.001 3.999 19 N -0.839 5.839 20 S 2.719 3.281 21 C -0.815 4.815 22 O -0.978 6.978 23 O -0.982 6.982 24 C 0.004 3.996 25 C -0.151 4.151 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.125 0.875 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.029 -6.465 19.838 20.963 hybrid contribution -0.198 0.758 -1.726 1.896 sum 1.831 -5.707 18.112 19.078 Atomic orbital electron populations 1.21848 0.97223 1.00053 0.99771 1.18482 0.91543 0.92126 0.81981 0.97631 1.21605 1.31732 1.12999 0.91209 0.92034 1.25731 0.95143 0.95621 1.02038 1.70025 1.37441 1.23942 1.24339 0.85476 0.78878 0.78233 0.78542 1.19291 1.21377 1.19503 1.48213 1.49092 1.13322 1.22277 1.22029 1.01377 0.80668 1.02495 1.21496 0.78006 0.86712 0.85294 1.90613 1.60121 1.19903 1.78366 1.21257 0.99033 0.99601 0.91553 1.22235 0.96361 1.01888 0.96975 1.21553 0.92914 0.92578 0.92899 1.57668 1.36765 1.61135 1.28320 1.04341 0.74669 0.76716 0.72329 1.30466 1.17154 1.21043 1.12820 1.93558 1.75877 1.49119 1.79228 1.93557 1.38521 1.86832 1.79331 1.21458 0.87259 0.98094 0.92800 1.21703 0.99668 0.97580 0.96142 0.96142 0.91746 0.93427 0.92737 0.90917 0.91758 0.88829 0.86819 0.91430 0.87809 0.89079 0.87535 0.83939 0.83843 0.84352 0.89545 0.88184 0.91332 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.97 71.98 0.65 -5.47 16 2 C 0.26 13.22 2.64 44.25 0.12 13.33 16 3 H 0.01 0.35 6.90 -2.39 -0.02 0.33 16 4 C -0.54 -28.56 7.99 25.60 0.20 -28.36 16 5 H 0.06 3.16 7.33 -2.91 -0.02 3.14 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -52.52 11.32 21.45 0.24 -52.27 16 8 Si 0.96 42.44 29.54 68.60 2.03 44.47 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 N -0.60 -23.60 2.75 -826.78 -2.28 -25.87 16 13 C 0.08 2.12 7.80 127.77 1.00 3.12 16 14 C 0.50 18.84 7.08 87.66 0.62 19.46 16 15 O -0.61 -29.44 15.31 -3.04 -0.05 -29.48 16 16 C -0.09 -2.24 1.68 -11.51 -0.02 -2.26 16 17 C -0.14 -2.38 5.00 30.67 0.15 -2.22 16 18 C 0.13 1.70 6.32 86.37 0.55 2.25 16 19 N -1.00 -15.39 3.22 -513.07 -1.65 -17.04 16 20 S 2.62 41.76 6.05 -56.49 -0.34 41.42 16 21 C -0.66 -6.22 10.99 113.37 1.25 -4.98 16 22 O -0.99 -21.32 16.72 -127.65 -2.13 -23.45 16 23 O -0.99 -22.45 16.72 -127.65 -2.13 -24.58 16 24 C 0.13 2.12 6.31 86.36 0.55 2.66 16 25 C -0.11 -2.49 4.65 30.67 0.14 -2.34 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 28 H 0.05 2.00 7.67 -2.39 -0.02 1.99 16 29 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.07 1.65 6.92 -2.38 -0.02 1.63 16 31 H 0.06 2.01 7.02 -2.39 -0.02 1.99 16 32 H 0.09 1.89 6.02 -2.39 -0.01 1.88 16 33 H 0.11 2.31 7.40 -2.39 -0.02 2.29 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.64 4.50 -2.39 -0.01 1.63 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 1.21 7.09 -2.39 -0.02 1.20 16 38 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.10 1.51 7.10 -2.38 -0.02 1.49 16 43 H 0.07 1.74 8.07 -2.39 -0.02 1.72 16 44 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 Total: -1.00 -79.09 353.22 0.32 -78.76 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 1.00 Total: 11.65 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 5.65 Total: -3.59 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -3.69 Total: -95.19 kcal Atomic # 8 Polarization: -73.20 SS G_CDS: -4.32 Total: -77.52 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 41.76 SS G_CDS: -0.34 Total: 41.42 kcal Total: -79.09 0.32 -78.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.361 kcal (2) G-P(sol) polarization free energy of solvation -79.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds