Wall clock time and date at job start Tue Mar 31 2020 12:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35634 * 116.99713 * 2 1 4 4 C 1.39198 * 119.72700 * 0.02562 * 3 2 1 5 5 C 1.36674 * 120.16040 * 180.02562 * 4 3 2 6 6 C 1.39705 * 119.90449 * 0.02562 * 5 4 3 7 7 C 1.40673 * 120.39775 * 359.97438 * 6 5 4 8 8 C 1.38585 * 118.98244 * 359.97438 * 7 6 5 9 9 N 1.39302 * 109.58784 * 179.97438 * 7 6 5 10 10 C 1.46498 * 124.31827 * 179.97438 * 9 7 6 11 11 N 1.46901 * 109.46917 * 90.00128 * 10 9 7 12 12 C 1.46898 * 111.00064 * 80.43869 * 11 10 9 13 13 C 1.46897 * 111.00141 * 204.39207 * 11 10 9 14 14 H 1.08997 * 109.47597 * 189.10375 * 13 11 10 15 15 C 1.53001 * 109.47223 * 309.10986 * 13 11 10 16 16 C 1.50704 * 109.46898 * 69.10852 * 13 11 10 17 17 H 1.07998 * 120.00023 * 0.02562 * 16 13 11 18 18 C 1.37876 * 120.00199 * 180.02562 * 16 13 11 19 19 N 1.31520 * 119.99695 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 120.00441 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47125 * 89.99664 * 20 18 16 22 22 H 1.48503 * 109.47269 * 210.00284 * 20 18 16 23 23 H 1.48503 * 109.46912 * 329.99870 * 20 18 16 24 24 C 1.34426 * 111.35795 * 0.26488 * 9 7 6 25 25 O 1.21310 * 126.21577 * 179.73884 * 24 9 7 26 26 C 1.47143 * 133.00891 * 179.97438 * 6 5 4 27 27 O 1.21406 * 127.54861 * 0.02562 * 26 6 5 28 28 H 1.08997 * 109.47142 * 59.99623 * 1 2 3 29 29 H 1.09004 * 109.47193 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46948 * 299.99570 * 1 2 3 31 31 H 1.08001 * 119.91589 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.05232 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99860 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.47551 * 330.00112 * 10 9 7 35 35 H 1.08999 * 109.46953 * 209.99605 * 10 9 7 36 36 H 1.09003 * 109.47358 * 183.95735 * 12 11 10 37 37 H 1.09000 * 109.47251 * 303.95504 * 12 11 10 38 38 H 1.09001 * 109.47285 * 63.95696 * 12 11 10 39 39 H 1.08996 * 109.46822 * 66.39877 * 15 13 11 40 40 H 1.09001 * 109.46733 * 306.39857 * 15 13 11 41 41 H 1.09001 * 109.46608 * 186.40189 * 15 13 11 42 42 H 0.96997 * 119.99693 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 1.2810 2.3723 0.0005 5 6 1.8922 3.5948 0.0000 6 6 3.2869 3.6762 -0.0016 7 6 4.0682 2.5064 -0.0022 8 6 3.4330 1.2746 -0.0005 9 7 5.4189 2.8469 -0.0044 10 6 6.5156 1.8756 -0.0050 11 7 6.8802 1.5496 -1.3902 12 6 7.7466 2.5875 -1.9647 13 6 7.5175 0.2285 -1.4699 14 1 7.9215 0.0797 -2.4712 15 6 8.6507 0.1462 -0.4452 16 6 6.4963 -0.8403 -1.1765 17 1 5.4759 -0.5655 -0.9535 18 6 6.8646 -2.1688 -1.1926 19 7 8.1074 -2.5033 -1.4636 20 14 5.5991 -3.4935 -0.8282 21 1 4.9464 -3.9160 -2.0934 22 1 6.2708 -4.6615 -0.2037 23 1 4.5740 -2.9562 0.1023 24 6 5.5876 4.1806 0.0004 25 8 6.6485 4.7688 0.0044 26 6 4.2261 4.8088 -0.0030 27 8 3.9575 5.9928 -0.0026 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2028 2.3090 0.0014 32 1 1.2979 4.4966 0.0000 33 1 4.0168 0.3660 -0.0014 34 1 6.1983 0.9689 0.5101 35 1 7.3784 2.3015 0.5071 36 1 7.9442 2.3574 -3.0117 37 1 7.2508 3.5555 -1.8928 38 1 8.6879 2.6198 -1.4159 39 1 8.2336 0.1810 0.5612 40 1 9.3299 0.9870 -0.5864 41 1 9.1958 -0.7880 -0.5807 42 1 8.3665 -3.4380 -1.4753 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103460818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:35 Heat of formation + Delta-G solvation = -33.384302 kcal Electronic energy + Delta-G solvation = -27439.229196 eV Core-core repulsion = 23579.602819 eV Total energy + Delta-G solvation = -3859.626378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.79552 -39.89420 -38.43949 -37.80549 -37.07050 -35.18705 -32.80986 -31.32767 -30.17999 -28.79845 -27.89875 -27.02492 -25.53412 -25.05272 -23.48051 -22.49279 -21.55141 -20.33426 -19.40309 -18.21527 -17.33146 -16.90722 -16.68884 -16.13634 -15.91830 -15.80066 -15.59652 -15.24177 -14.85115 -14.16393 -14.05166 -13.65621 -13.58214 -13.40011 -13.27080 -13.15182 -12.89933 -12.49320 -12.21825 -11.97961 -11.87384 -11.66052 -11.48766 -11.16453 -11.04518 -10.92124 -10.81204 -10.64226 -10.47441 -10.21193 -9.90823 -9.41721 -9.07336 -8.54718 -8.49936 -8.12501 -7.47142 -6.12545 -4.17976 0.11370 1.22056 1.76152 2.47889 3.03279 3.08193 3.25631 3.32715 3.35719 3.62965 3.69970 4.32350 4.46258 4.57420 4.74703 4.85950 4.91486 4.96013 5.02127 5.20090 5.22794 5.29981 5.44013 5.54462 5.85296 5.90090 5.98897 6.06809 6.12805 6.18672 6.24254 6.35344 6.45287 6.60398 6.69668 6.86913 6.95508 7.02709 7.19293 7.23425 7.50485 7.68838 7.76354 7.92001 8.18366 8.37572 8.87218 9.48450 10.94584 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010024 B = 0.006261 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.666325 B = 4471.230686 C = 7042.609436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.303 6.303 3 C 0.205 3.795 4 C -0.254 4.254 5 C 0.032 3.968 6 C -0.292 4.292 7 C 0.258 3.742 8 C -0.176 4.176 9 N -0.529 5.529 10 C 0.278 3.722 11 N -0.547 5.547 12 C 0.024 3.976 13 C 0.216 3.784 14 H 0.046 0.954 15 C -0.172 4.172 16 C -0.509 4.509 17 H 0.064 0.936 18 C 0.064 3.936 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.270 1.270 24 C 0.491 3.509 25 O -0.455 6.455 26 C 0.397 3.603 27 O -0.393 6.393 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.157 0.843 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.024 0.976 39 H 0.031 0.969 40 H 0.011 0.989 41 H 0.089 0.911 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.804 6.446 4.159 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.215 6.215 3 C 0.157 3.843 4 C -0.273 4.273 5 C 0.014 3.986 6 C -0.296 4.296 7 C 0.160 3.840 8 C -0.198 4.198 9 N -0.253 5.253 10 C 0.068 3.932 11 N -0.272 5.272 12 C -0.124 4.124 13 C 0.110 3.890 14 H 0.064 0.936 15 C -0.231 4.231 16 C -0.547 4.547 17 H 0.082 0.918 18 C -0.139 4.139 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.195 1.195 24 C 0.275 3.725 25 O -0.325 6.325 26 C 0.269 3.731 27 O -0.264 6.264 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.174 0.826 34 H 0.135 0.865 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.050 0.950 40 H 0.030 0.970 41 H 0.107 0.893 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.371 7.009 3.857 15.582 hybrid contribution 0.030 -0.875 0.458 0.988 sum -13.341 6.134 4.315 15.305 Atomic orbital electron populations 1.23169 0.77827 1.04379 1.01639 1.86114 1.21788 1.26605 1.86953 1.18917 0.91348 0.84286 0.89772 1.20850 1.00354 0.91680 1.14464 1.20142 0.91282 0.97637 0.89574 1.20324 0.94649 0.93852 1.20813 1.17924 0.82858 0.93355 0.89885 1.19656 0.91527 0.97466 1.11118 1.46078 1.05682 1.07086 1.66452 1.22269 0.86759 0.91274 0.92890 1.62016 1.44128 1.04681 1.16341 1.22390 0.95302 0.94911 0.99825 1.19354 0.91434 0.82201 0.95982 0.93575 1.22456 1.00007 1.01497 0.99162 1.21071 0.95600 0.89989 1.48075 0.91763 1.24909 0.95310 0.98598 0.95044 1.69890 1.16493 1.17625 1.48873 0.86559 0.81402 0.81256 0.78675 1.20616 1.21375 1.19461 1.21131 0.91372 0.82974 0.77045 1.90765 1.30797 1.67265 1.43720 1.22262 0.89766 0.88266 0.72834 1.90564 1.84138 1.17907 1.33759 0.92155 0.87950 0.92260 0.84461 0.84633 0.82579 0.86490 0.91745 0.91868 0.92947 0.95706 0.95003 0.97000 0.89272 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.80 101.05 0.99 1.17 16 2 O -0.30 -3.81 10.48 -18.60 -0.19 -4.00 16 3 C 0.20 2.65 6.69 -38.95 -0.26 2.39 16 4 C -0.25 -2.63 8.97 -39.79 -0.36 -2.98 16 5 C 0.03 0.36 10.05 -39.60 -0.40 -0.04 16 6 C -0.29 -4.11 6.33 -104.82 -0.66 -4.77 16 7 C 0.26 4.02 6.73 -83.42 -0.56 3.46 16 8 C -0.18 -2.70 9.72 -39.18 -0.38 -3.08 16 9 N -0.53 -9.02 2.94 -116.85 -0.34 -9.36 16 10 C 0.28 5.15 4.09 -63.32 -0.26 4.89 16 11 N -0.55 -11.22 4.78 -240.20 -1.15 -12.36 16 12 C 0.02 0.46 9.20 60.06 0.55 1.01 16 13 C 0.22 5.04 2.28 -68.86 -0.16 4.88 16 14 H 0.05 1.20 8.01 -51.93 -0.42 0.78 16 15 C -0.17 -3.85 8.12 37.16 0.30 -3.55 16 16 C -0.51 -12.67 7.69 -34.44 -0.26 -12.94 16 17 H 0.06 1.57 5.99 -52.49 -0.31 1.25 16 18 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -23.91 11.39 55.43 0.63 -23.28 16 20 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 C 0.49 8.54 7.37 -11.51 -0.08 8.46 16 25 O -0.45 -8.85 16.41 5.53 0.09 -8.75 16 26 C 0.40 6.28 7.95 -31.06 -0.25 6.04 16 27 O -0.39 -6.69 18.03 5.45 0.10 -6.59 16 28 H 0.06 0.37 7.64 -51.93 -0.40 -0.03 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.34 7.64 -51.92 -0.40 -0.06 16 31 H 0.14 0.98 6.25 -52.49 -0.33 0.65 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.16 2.69 6.19 -52.49 -0.32 2.36 16 34 H 0.12 2.22 6.08 -51.93 -0.32 1.91 16 35 H 0.06 1.19 7.47 -51.93 -0.39 0.81 16 36 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 37 H 0.05 0.98 5.91 -51.93 -0.31 0.68 16 38 H 0.02 0.46 6.64 -51.93 -0.34 0.12 16 39 H 0.03 0.68 6.99 -51.93 -0.36 0.31 16 40 H 0.01 0.23 6.60 -51.93 -0.34 -0.11 16 41 H 0.09 2.22 6.27 -51.93 -0.33 1.89 16 42 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -28.97 345.46 -7.53 -36.50 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -4.96 Total: 1.14 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -1.88 Total: 6.48 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.86 Total: -45.00 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.01 Total: -19.35 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.97 -7.53 -36.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.115 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds