Wall clock time and date at job start Tue Mar 31 2020 12:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35634 * 116.99713 * 2 1 4 4 C 1.39198 * 119.72700 * 0.02562 * 3 2 1 5 5 C 1.36674 * 120.16040 * 180.02562 * 4 3 2 6 6 C 1.39705 * 119.90449 * 0.02562 * 5 4 3 7 7 C 1.40673 * 120.39775 * 359.97438 * 6 5 4 8 8 C 1.38585 * 118.98244 * 359.97438 * 7 6 5 9 9 N 1.39302 * 109.58784 * 179.97438 * 7 6 5 10 10 C 1.46498 * 124.31827 * 179.97438 * 9 7 6 11 11 N 1.46901 * 109.46917 * 90.00128 * 10 9 7 12 12 C 1.46898 * 111.00064 * 80.43869 * 11 10 9 13 13 C 1.46897 * 111.00141 * 204.39207 * 11 10 9 14 14 H 1.08997 * 109.47597 * 189.10375 * 13 11 10 15 15 C 1.53001 * 109.47223 * 309.10986 * 13 11 10 16 16 C 1.50704 * 109.46898 * 69.10852 * 13 11 10 17 17 H 1.07998 * 120.00023 * 0.02562 * 16 13 11 18 18 C 1.37876 * 120.00199 * 180.02562 * 16 13 11 19 19 N 1.31520 * 119.99695 * 0.02562 * 18 16 13 20 20 Si 1.86796 * 120.00441 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47125 * 89.99664 * 20 18 16 22 22 H 1.48503 * 109.47269 * 210.00284 * 20 18 16 23 23 H 1.48503 * 109.46912 * 329.99870 * 20 18 16 24 24 C 1.34426 * 111.35795 * 0.26488 * 9 7 6 25 25 O 1.21310 * 126.21577 * 179.73884 * 24 9 7 26 26 C 1.47143 * 133.00891 * 179.97438 * 6 5 4 27 27 O 1.21406 * 127.54861 * 0.02562 * 26 6 5 28 28 H 1.08997 * 109.47142 * 59.99623 * 1 2 3 29 29 H 1.09004 * 109.47193 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46948 * 299.99570 * 1 2 3 31 31 H 1.08001 * 119.91589 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.05232 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99860 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.47551 * 330.00112 * 10 9 7 35 35 H 1.08999 * 109.46953 * 209.99605 * 10 9 7 36 36 H 1.09003 * 109.47358 * 183.95735 * 12 11 10 37 37 H 1.09000 * 109.47251 * 303.95504 * 12 11 10 38 38 H 1.09001 * 109.47285 * 63.95696 * 12 11 10 39 39 H 1.08996 * 109.46822 * 66.39877 * 15 13 11 40 40 H 1.09001 * 109.46733 * 306.39857 * 15 13 11 41 41 H 1.09001 * 109.46608 * 186.40189 * 15 13 11 42 42 H 0.96997 * 119.99693 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 1.2810 2.3723 0.0005 5 6 1.8922 3.5948 0.0000 6 6 3.2869 3.6762 -0.0016 7 6 4.0682 2.5064 -0.0022 8 6 3.4330 1.2746 -0.0005 9 7 5.4189 2.8469 -0.0044 10 6 6.5156 1.8756 -0.0050 11 7 6.8802 1.5496 -1.3902 12 6 7.7466 2.5875 -1.9647 13 6 7.5175 0.2285 -1.4699 14 1 7.9215 0.0797 -2.4712 15 6 8.6507 0.1462 -0.4452 16 6 6.4963 -0.8403 -1.1765 17 1 5.4759 -0.5655 -0.9535 18 6 6.8646 -2.1688 -1.1926 19 7 8.1074 -2.5033 -1.4636 20 14 5.5991 -3.4935 -0.8282 21 1 4.9464 -3.9160 -2.0934 22 1 6.2708 -4.6615 -0.2037 23 1 4.5740 -2.9562 0.1023 24 6 5.5876 4.1806 0.0004 25 8 6.6485 4.7688 0.0044 26 6 4.2261 4.8088 -0.0030 27 8 3.9575 5.9928 -0.0026 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.2028 2.3090 0.0014 32 1 1.2979 4.4966 0.0000 33 1 4.0168 0.3660 -0.0014 34 1 6.1983 0.9689 0.5101 35 1 7.3784 2.3015 0.5071 36 1 7.9442 2.3574 -3.0117 37 1 7.2508 3.5555 -1.8928 38 1 8.6879 2.6198 -1.4159 39 1 8.2336 0.1810 0.5612 40 1 9.3299 0.9870 -0.5864 41 1 9.1958 -0.7880 -0.5807 42 1 8.3665 -3.4380 -1.4753 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103460818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:34 Heat of formation + Delta-G solvation = -52.161984 kcal Electronic energy + Delta-G solvation = -27440.043458 eV Core-core repulsion = 23579.602819 eV Total energy + Delta-G solvation = -3860.440639 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.03766 -40.88236 -39.80443 -39.01720 -38.63665 -36.39452 -34.68990 -32.40602 -31.51490 -30.49378 -28.84288 -28.08173 -27.34620 -26.49466 -25.03928 -23.65579 -22.68498 -21.77095 -20.91124 -19.31861 -18.67301 -18.33142 -17.99570 -17.57009 -17.09425 -16.94591 -16.66258 -16.61258 -16.38264 -15.72480 -15.50533 -15.06521 -14.86023 -14.75668 -14.49651 -14.15581 -14.04062 -13.92110 -13.79857 -13.43101 -13.23760 -13.00216 -12.85223 -12.71405 -12.60343 -12.44410 -12.29730 -12.18298 -11.95395 -11.77679 -11.42883 -10.96931 -10.72374 -10.49111 -9.61536 -9.29617 -9.09450 -8.10293 -6.20951 -1.08589 0.19547 0.64854 1.19597 1.45819 1.48032 1.57333 1.76216 2.10986 2.44370 2.54301 2.62241 3.19700 3.26251 3.32984 3.52845 3.81911 3.96569 4.03696 4.12759 4.26766 4.41503 4.44541 4.49714 4.50591 4.53360 4.71442 4.81136 4.83050 4.87016 4.92315 5.01702 5.06723 5.11236 5.20436 5.29819 5.39684 5.61764 5.69433 5.75676 5.86396 6.08293 6.27892 6.33807 6.44176 6.53986 6.90542 7.48649 8.96314 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010024 B = 0.006261 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.666325 B = 4471.230686 C = 7042.609436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.328 6.328 3 C 0.209 3.791 4 C -0.232 4.232 5 C 0.047 3.953 6 C -0.294 4.294 7 C 0.237 3.763 8 C -0.197 4.197 9 N -0.531 5.531 10 C 0.287 3.713 11 N -0.553 5.553 12 C 0.031 3.969 13 C 0.222 3.778 14 H 0.015 0.985 15 C -0.158 4.158 16 C -0.513 4.513 17 H 0.066 0.934 18 C 0.019 3.981 19 N -0.919 5.919 20 Si 0.951 3.049 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.486 3.514 25 O -0.485 6.485 26 C 0.407 3.593 27 O -0.408 6.408 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.182 0.818 32 H 0.172 0.828 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.025 0.975 39 H 0.036 0.964 40 H 0.024 0.976 41 H 0.064 0.936 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.463 6.856 4.675 19.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.240 6.240 3 C 0.161 3.839 4 C -0.251 4.251 5 C 0.029 3.971 6 C -0.298 4.298 7 C 0.140 3.860 8 C -0.218 4.218 9 N -0.255 5.255 10 C 0.077 3.923 11 N -0.278 5.278 12 C -0.117 4.117 13 C 0.116 3.884 14 H 0.033 0.967 15 C -0.217 4.217 16 C -0.552 4.552 17 H 0.084 0.916 18 C -0.181 4.181 19 N -0.558 5.558 20 Si 0.777 3.223 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.185 1.185 24 C 0.271 3.729 25 O -0.358 6.358 26 C 0.280 3.720 27 O -0.280 6.280 28 H 0.097 0.903 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.199 0.801 32 H 0.189 0.811 33 H 0.146 0.854 34 H 0.127 0.873 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.082 7.417 4.381 19.131 hybrid contribution 1.024 -1.057 0.291 1.500 sum -16.058 6.360 4.672 17.892 Atomic orbital electron populations 1.23583 0.74985 1.06097 1.03608 1.86095 1.24766 1.26653 1.86485 1.19023 0.90598 0.85617 0.88705 1.21255 1.02220 0.89959 1.11642 1.20587 0.89896 0.99414 0.87228 1.20291 0.95731 0.91744 1.22059 1.18041 0.82062 0.94236 0.91612 1.19569 0.92926 0.96261 1.13076 1.45917 1.06220 1.06707 1.66606 1.22032 0.87319 0.91380 0.91555 1.61931 1.44191 1.03917 1.17782 1.22336 0.95063 0.94446 0.99878 1.19099 0.91454 0.83501 0.94359 0.96728 1.22258 0.99660 1.00666 0.99142 1.21328 0.95968 0.90547 1.47332 0.91618 1.25603 0.96822 1.00532 0.95093 1.70017 1.18014 1.17822 1.49998 0.85646 0.79454 0.78744 0.78442 1.20662 1.21405 1.18474 1.21551 0.91972 0.83058 0.76363 1.90735 1.31978 1.67783 1.45315 1.22101 0.89132 0.88393 0.72367 1.90560 1.83979 1.18414 1.35017 0.90335 0.86691 0.89943 0.80099 0.81108 0.85365 0.87289 0.91926 0.91602 0.92714 0.95635 0.94521 0.95670 0.91703 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.80 113.37 1.11 1.22 16 2 O -0.33 -7.35 10.48 -89.48 -0.94 -8.29 16 3 C 0.21 4.87 6.69 22.68 0.15 5.02 16 4 C -0.23 -3.68 8.97 22.13 0.20 -3.48 16 5 C 0.05 0.84 10.05 22.26 0.22 1.07 16 6 C -0.29 -7.70 6.33 -19.99 -0.13 -7.82 16 7 C 0.24 7.29 6.73 38.63 0.26 7.55 16 8 C -0.20 -5.94 9.72 22.53 0.22 -5.72 16 9 N -0.53 -18.35 2.94 -642.16 -1.89 -20.24 16 10 C 0.29 10.95 4.09 170.81 0.70 11.64 16 11 N -0.55 -23.27 4.78 -913.85 -4.37 -27.64 16 12 C 0.03 1.21 9.20 127.69 1.18 2.38 16 13 C 0.22 10.70 2.28 44.17 0.10 10.80 16 14 H 0.01 0.80 8.01 -2.39 -0.02 0.78 16 15 C -0.16 -7.27 8.12 71.98 0.58 -6.68 16 16 C -0.51 -26.12 7.69 25.60 0.20 -25.92 16 17 H 0.07 3.28 5.99 -2.91 -0.02 3.26 16 18 C 0.02 0.98 5.30 84.65 0.45 1.42 16 19 N -0.92 -50.49 11.39 21.45 0.24 -50.25 16 20 Si 0.95 41.43 29.54 68.60 2.03 43.46 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 24 C 0.49 17.08 7.37 87.47 0.64 17.72 16 25 O -0.49 -19.27 16.41 -3.12 -0.05 -19.32 16 26 C 0.41 12.52 7.95 27.79 0.22 12.74 16 27 O -0.41 -13.41 18.03 -3.42 -0.06 -13.47 16 28 H 0.08 0.57 7.64 -2.39 -0.02 0.55 16 29 H 0.11 0.93 8.14 -2.38 -0.02 0.92 16 30 H 0.08 0.51 7.64 -2.38 -0.02 0.49 16 31 H 0.18 1.34 6.25 -2.91 -0.02 1.32 16 32 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.13 4.56 6.19 -2.91 -0.02 4.54 16 34 H 0.11 4.30 6.08 -2.39 -0.01 4.29 16 35 H 0.06 2.39 7.47 -2.39 -0.02 2.37 16 36 H 0.07 2.47 8.10 -2.39 -0.02 2.45 16 37 H 0.05 2.09 5.91 -2.39 -0.01 2.08 16 38 H 0.03 0.97 6.64 -2.39 -0.02 0.95 16 39 H 0.04 1.60 6.99 -2.39 -0.02 1.58 16 40 H 0.02 1.05 6.60 -2.39 -0.02 1.03 16 41 H 0.06 3.32 6.27 -2.39 -0.01 3.31 16 42 H 0.26 13.78 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -64.50 345.46 2.14 -62.35 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.07 Total: 11.44 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 6.11 Total: 21.95 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -6.01 Total: -98.12 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -1.05 Total: -41.07 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -64.50 2.14 -62.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.192 kcal (2) G-P(sol) polarization free energy of solvation -64.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds