Wall clock time and date at job start Tue Mar 31 2020 12:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35630 * 117.00113 * 2 1 4 4 C 1.39203 * 119.72616 * 0.02562 * 3 2 1 5 5 C 1.36676 * 120.16336 * 180.02562 * 4 3 2 6 6 C 1.39712 * 119.89752 * 0.02562 * 5 4 3 7 7 C 1.40664 * 120.39958 * 359.97438 * 6 5 4 8 8 C 1.38582 * 118.98621 * 359.97438 * 7 6 5 9 9 N 1.39303 * 109.58189 * 179.97438 * 7 6 5 10 10 C 1.46507 * 124.31644 * 180.02562 * 9 7 6 11 11 N 1.46895 * 109.47306 * 89.99463 * 10 9 7 12 12 C 1.46904 * 110.99841 * 81.04778 * 11 10 9 13 13 C 1.46899 * 111.00230 * 204.99922 * 11 10 9 14 14 H 1.09002 * 109.47043 * 55.00375 * 13 11 10 15 15 C 1.52997 * 109.47254 * 295.00304 * 13 11 10 16 16 C 1.50699 * 109.47244 * 175.00202 * 13 11 10 17 17 H 1.08000 * 119.99792 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99902 * 179.97438 * 16 13 11 19 19 N 1.31515 * 120.00126 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99745 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47319 * 60.00570 * 20 18 16 22 22 H 1.48503 * 109.46734 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47266 * 300.00384 * 20 18 16 24 24 C 1.34421 * 111.36480 * 0.26354 * 9 7 6 25 25 O 1.21310 * 126.22132 * 179.73478 * 24 9 7 26 26 C 1.47143 * 133.00143 * 179.97438 * 6 5 4 27 27 O 1.21401 * 127.55272 * 0.02562 * 26 6 5 28 28 H 1.09003 * 109.47223 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47262 * 299.99548 * 1 2 3 30 30 H 1.09005 * 109.47070 * 59.99872 * 1 2 3 31 31 H 1.07998 * 119.91503 * 0.02562 * 4 3 2 32 32 H 1.07992 * 120.04796 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99660 * 179.97438 * 8 7 6 34 34 H 1.09005 * 109.46811 * 329.99754 * 10 9 7 35 35 H 1.08996 * 109.47282 * 210.00128 * 10 9 7 36 36 H 1.08992 * 109.47139 * 183.95276 * 12 11 10 37 37 H 1.08998 * 109.46871 * 303.95426 * 12 11 10 38 38 H 1.09004 * 109.46908 * 63.95125 * 12 11 10 39 39 H 1.08996 * 109.47853 * 179.97438 * 15 13 11 40 40 H 1.09002 * 109.47153 * 300.00004 * 15 13 11 41 41 H 1.08998 * 109.47533 * 59.99633 * 15 13 11 42 42 H 0.96999 * 120.00073 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2811 2.3723 0.0005 5 6 1.8923 3.5948 0.0000 6 6 3.2870 3.6760 -0.0016 7 6 4.0682 2.5062 -0.0022 8 6 3.4330 1.2745 -0.0005 9 7 5.4189 2.8468 -0.0044 10 6 6.5157 1.8754 -0.0061 11 7 6.8799 1.5504 -1.3916 12 6 7.7580 2.5816 -1.9607 13 6 7.5041 0.2232 -1.4744 14 1 6.8409 -0.5186 -1.0295 15 6 8.8341 0.2370 -0.7183 16 6 7.7512 -0.1263 -2.9193 17 1 7.4729 0.5682 -3.6981 18 6 8.3337 -1.3324 -3.2469 19 7 8.6731 -2.1779 -2.2984 20 14 8.6407 -1.7653 -5.0379 21 1 9.5441 -0.7545 -5.6437 22 1 9.2716 -3.1071 -5.1216 23 1 7.3500 -1.7790 -5.7722 24 6 5.5877 4.1803 0.0004 25 8 6.6487 4.7686 0.0044 26 6 4.2263 4.8087 -0.0030 27 8 3.9578 5.9926 -0.0026 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2029 2.3090 0.0014 32 1 1.2980 4.4965 0.0000 33 1 4.0168 0.3659 -0.0014 34 1 6.1983 0.9683 0.5084 35 1 7.3786 2.3007 0.5063 36 1 7.9555 2.3530 -3.0079 37 1 7.2716 3.5542 -1.8865 38 1 8.6983 2.6025 -1.4097 39 1 9.2971 -0.7478 -0.7794 40 1 9.4973 0.9789 -1.1633 41 1 8.6554 0.4899 0.3267 42 1 9.0825 -3.0265 -2.5289 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103460819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:39 Heat of formation + Delta-G solvation = -31.226888 kcal Electronic energy + Delta-G solvation = -26979.547065 eV Core-core repulsion = 23120.014240 eV Total energy + Delta-G solvation = -3859.532825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.87527 -39.99566 -38.48632 -37.88743 -37.09771 -35.29602 -32.79482 -31.42330 -30.29330 -28.54665 -27.98924 -27.11517 -25.57071 -25.22383 -23.52935 -22.57511 -21.59283 -20.35313 -19.42869 -18.29887 -17.39875 -17.00954 -16.49559 -16.27880 -16.00913 -15.97170 -15.60155 -15.20988 -14.83180 -14.44960 -14.13470 -13.69298 -13.64850 -13.54738 -13.28802 -13.22321 -12.94583 -12.59107 -12.48870 -11.95468 -11.72771 -11.64321 -11.25448 -11.18693 -11.11138 -10.93037 -10.81854 -10.70119 -10.45162 -10.11839 -9.98189 -9.48713 -9.03172 -8.65637 -8.47235 -8.22545 -7.45722 -6.09561 -4.13736 0.04487 1.11339 1.67723 2.37093 2.93245 3.01824 3.29065 3.33325 3.36653 3.52857 3.61791 4.35159 4.37594 4.48283 4.65451 4.78211 4.85729 4.87877 4.93236 5.12180 5.21574 5.23198 5.29691 5.43275 5.62803 5.78824 5.94150 6.06173 6.07654 6.14436 6.28355 6.32986 6.53562 6.69191 6.79090 6.81539 6.92834 6.96727 7.08482 7.26152 7.57069 7.64598 7.73846 7.91051 8.21611 8.40417 8.90590 9.51665 10.97414 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011481 B = 0.004433 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.177588 B = 6315.231155 C = 8003.445239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.206 3.794 4 C -0.254 4.254 5 C 0.035 3.965 6 C -0.290 4.290 7 C 0.258 3.742 8 C -0.178 4.178 9 N -0.530 5.530 10 C 0.270 3.730 11 N -0.546 5.546 12 C 0.035 3.965 13 C 0.218 3.782 14 H 0.043 0.957 15 C -0.175 4.175 16 C -0.503 4.503 17 H 0.063 0.937 18 C 0.061 3.939 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.492 3.508 25 O -0.449 6.449 26 C 0.397 3.603 27 O -0.390 6.390 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.149 0.851 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.026 0.974 39 H 0.092 0.908 40 H 0.034 0.966 41 H 0.007 0.993 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.122 5.383 7.316 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.216 6.216 3 C 0.158 3.842 4 C -0.273 4.273 5 C 0.016 3.984 6 C -0.294 4.294 7 C 0.159 3.841 8 C -0.200 4.200 9 N -0.254 5.254 10 C 0.060 3.940 11 N -0.271 5.271 12 C -0.114 4.114 13 C 0.112 3.888 14 H 0.061 0.939 15 C -0.235 4.235 16 C -0.541 4.541 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.276 3.724 25 O -0.320 6.320 26 C 0.269 3.731 27 O -0.261 6.261 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.166 0.834 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.026 0.974 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.723 5.933 7.057 18.227 hybrid contribution 0.818 -0.404 -0.598 1.091 sum -14.905 5.528 6.458 17.159 Atomic orbital electron populations 1.23177 0.77640 1.04450 1.01729 1.86078 1.21953 1.26596 1.86996 1.18883 0.91278 0.84338 0.89712 1.20859 1.00434 0.91657 1.14385 1.20173 0.91292 0.97727 0.89229 1.20329 0.94648 0.93865 1.20607 1.17938 0.82908 0.93455 0.89761 1.19420 0.91454 0.96903 1.12211 1.46038 1.05437 1.07173 1.66739 1.22214 0.87201 0.90971 0.93626 1.62069 1.45021 1.05546 1.14482 1.22301 0.94516 0.93207 1.01341 1.19335 0.90088 0.82401 0.96980 0.93899 1.22475 1.01651 1.04094 0.95246 1.21006 1.39554 1.02387 0.91159 0.91900 1.24896 0.95459 0.96147 0.97528 1.69855 1.42267 1.09234 1.31857 0.86554 0.78503 0.77420 0.84905 1.20324 1.21330 1.20205 1.21118 0.91411 0.82852 0.77041 1.90781 1.30774 1.67172 1.43240 1.22241 0.89700 0.88286 0.72913 1.90572 1.84080 1.17879 1.33563 0.87859 0.92217 0.92103 0.84371 0.84525 0.83366 0.88279 0.91292 0.90477 0.93826 0.95575 0.88934 0.94667 0.97448 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.80 101.05 0.99 1.14 16 2 O -0.30 -3.25 10.48 -18.59 -0.19 -3.44 16 3 C 0.21 2.33 6.69 -38.95 -0.26 2.07 16 4 C -0.25 -2.34 8.97 -39.79 -0.36 -2.70 16 5 C 0.03 0.35 10.05 -39.60 -0.40 -0.04 16 6 C -0.29 -3.83 6.33 -104.82 -0.66 -4.50 16 7 C 0.26 3.69 6.73 -83.42 -0.56 3.13 16 8 C -0.18 -2.38 9.72 -39.18 -0.38 -2.76 16 9 N -0.53 -8.52 2.95 -116.84 -0.34 -8.87 16 10 C 0.27 4.68 4.63 -63.31 -0.29 4.38 16 11 N -0.55 -11.22 4.84 -240.20 -1.16 -12.39 16 12 C 0.03 0.70 8.72 60.07 0.52 1.23 16 13 C 0.22 5.10 2.27 -68.87 -0.16 4.95 16 14 H 0.04 1.08 7.93 -51.93 -0.41 0.66 16 15 C -0.18 -3.99 8.34 37.16 0.31 -3.68 16 16 C -0.50 -13.14 7.94 -34.44 -0.27 -13.42 16 17 H 0.06 1.67 6.75 -52.49 -0.35 1.32 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 19 N -0.89 -24.30 11.32 55.43 0.63 -23.68 16 20 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 C 0.49 8.33 7.40 -11.51 -0.09 8.24 16 25 O -0.45 -8.66 16.41 5.53 0.09 -8.57 16 26 C 0.40 6.07 7.95 -31.06 -0.25 5.83 16 27 O -0.39 -6.49 18.03 5.45 0.10 -6.39 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.27 7.64 -51.93 -0.40 -0.13 16 30 H 0.06 0.31 7.64 -51.93 -0.40 -0.09 16 31 H 0.14 0.85 6.25 -52.49 -0.33 0.52 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.15 2.07 7.78 -52.49 -0.41 1.66 16 34 H 0.10 1.58 7.30 -51.93 -0.38 1.20 16 35 H 0.07 1.21 7.39 -51.93 -0.38 0.82 16 36 H 0.08 1.65 6.53 -51.93 -0.34 1.31 16 37 H 0.04 0.86 5.93 -51.93 -0.31 0.55 16 38 H 0.03 0.53 6.27 -51.93 -0.33 0.20 16 39 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 40 H 0.03 0.79 6.39 -51.93 -0.33 0.46 16 41 H 0.01 0.13 7.13 -51.93 -0.37 -0.24 16 42 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 347.26 15.07 5.23 5.23 Total: -1.00 -29.98 347.26 -7.65 -37.63 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -5.03 Total: -0.73 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -1.95 Total: 5.40 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.88 Total: -44.93 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.01 Total: -18.41 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.98 -7.65 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.403 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds