Wall clock time and date at job start Tue Mar 31 2020 12:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35630 * 117.00113 * 2 1 4 4 C 1.39203 * 119.72616 * 0.02562 * 3 2 1 5 5 C 1.36676 * 120.16336 * 180.02562 * 4 3 2 6 6 C 1.39712 * 119.89752 * 0.02562 * 5 4 3 7 7 C 1.40664 * 120.39958 * 359.97438 * 6 5 4 8 8 C 1.38582 * 118.98621 * 359.97438 * 7 6 5 9 9 N 1.39303 * 109.58189 * 179.97438 * 7 6 5 10 10 C 1.46507 * 124.31644 * 180.02562 * 9 7 6 11 11 N 1.46895 * 109.47306 * 89.99463 * 10 9 7 12 12 C 1.46904 * 110.99841 * 81.04778 * 11 10 9 13 13 C 1.46899 * 111.00230 * 204.99922 * 11 10 9 14 14 H 1.09002 * 109.47043 * 55.00375 * 13 11 10 15 15 C 1.52997 * 109.47254 * 295.00304 * 13 11 10 16 16 C 1.50699 * 109.47244 * 175.00202 * 13 11 10 17 17 H 1.08000 * 119.99792 * 0.02562 * 16 13 11 18 18 C 1.37878 * 119.99902 * 179.97438 * 16 13 11 19 19 N 1.31515 * 120.00126 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99745 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47319 * 60.00570 * 20 18 16 22 22 H 1.48503 * 109.46734 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47266 * 300.00384 * 20 18 16 24 24 C 1.34421 * 111.36480 * 0.26354 * 9 7 6 25 25 O 1.21310 * 126.22132 * 179.73478 * 24 9 7 26 26 C 1.47143 * 133.00143 * 179.97438 * 6 5 4 27 27 O 1.21401 * 127.55272 * 0.02562 * 26 6 5 28 28 H 1.09003 * 109.47223 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47262 * 299.99548 * 1 2 3 30 30 H 1.09005 * 109.47070 * 59.99872 * 1 2 3 31 31 H 1.07998 * 119.91503 * 0.02562 * 4 3 2 32 32 H 1.07992 * 120.04796 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99660 * 179.97438 * 8 7 6 34 34 H 1.09005 * 109.46811 * 329.99754 * 10 9 7 35 35 H 1.08996 * 109.47282 * 210.00128 * 10 9 7 36 36 H 1.08992 * 109.47139 * 183.95276 * 12 11 10 37 37 H 1.08998 * 109.46871 * 303.95426 * 12 11 10 38 38 H 1.09004 * 109.46908 * 63.95125 * 12 11 10 39 39 H 1.08996 * 109.47853 * 179.97438 * 15 13 11 40 40 H 1.09002 * 109.47153 * 300.00004 * 15 13 11 41 41 H 1.08998 * 109.47533 * 59.99633 * 15 13 11 42 42 H 0.96999 * 120.00073 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2811 2.3723 0.0005 5 6 1.8923 3.5948 0.0000 6 6 3.2870 3.6760 -0.0016 7 6 4.0682 2.5062 -0.0022 8 6 3.4330 1.2745 -0.0005 9 7 5.4189 2.8468 -0.0044 10 6 6.5157 1.8754 -0.0061 11 7 6.8799 1.5504 -1.3916 12 6 7.7580 2.5816 -1.9607 13 6 7.5041 0.2232 -1.4744 14 1 6.8409 -0.5186 -1.0295 15 6 8.8341 0.2370 -0.7183 16 6 7.7512 -0.1263 -2.9193 17 1 7.4729 0.5682 -3.6981 18 6 8.3337 -1.3324 -3.2469 19 7 8.6731 -2.1779 -2.2984 20 14 8.6407 -1.7653 -5.0379 21 1 9.5441 -0.7545 -5.6437 22 1 9.2716 -3.1071 -5.1216 23 1 7.3500 -1.7790 -5.7722 24 6 5.5877 4.1803 0.0004 25 8 6.6487 4.7686 0.0044 26 6 4.2263 4.8087 -0.0030 27 8 3.9578 5.9926 -0.0026 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2029 2.3090 0.0014 32 1 1.2980 4.4965 0.0000 33 1 4.0168 0.3659 -0.0014 34 1 6.1983 0.9683 0.5084 35 1 7.3786 2.3007 0.5063 36 1 7.9555 2.3530 -3.0079 37 1 7.2716 3.5542 -1.8865 38 1 8.6983 2.6025 -1.4097 39 1 9.2971 -0.7478 -0.7794 40 1 9.4973 0.9789 -1.1633 41 1 8.6554 0.4899 0.3267 42 1 9.0825 -3.0265 -2.5289 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103460819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:38 Heat of formation + Delta-G solvation = -50.789576 kcal Electronic energy + Delta-G solvation = -26980.395367 eV Core-core repulsion = 23120.014240 eV Total energy + Delta-G solvation = -3860.381127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.04764 -40.88907 -39.80431 -39.02458 -38.66905 -36.44428 -34.68690 -32.43214 -31.58306 -30.21871 -28.87414 -28.17312 -27.28245 -26.77755 -24.98475 -23.66287 -22.65843 -21.73820 -20.94894 -19.30810 -18.63154 -18.14280 -18.00649 -17.80521 -17.10601 -16.94091 -16.65784 -16.62640 -16.22451 -16.09032 -15.45251 -15.07253 -14.93750 -14.75692 -14.51373 -14.41623 -14.07855 -13.93536 -13.52923 -13.40118 -13.04635 -13.01179 -12.91185 -12.75038 -12.65552 -12.45002 -12.30804 -12.05701 -11.94669 -11.86458 -11.47943 -10.97653 -10.73394 -10.50105 -9.63491 -9.30954 -9.08780 -8.12159 -6.22285 -1.09274 0.18039 0.63553 1.16127 1.44154 1.44316 1.52017 1.75584 2.09420 2.42074 2.53489 2.61106 3.17301 3.24055 3.32110 3.50751 3.80458 3.91469 4.01575 4.10292 4.20566 4.41498 4.44420 4.50580 4.51574 4.61033 4.70244 4.80065 4.84178 4.87131 5.01580 5.04696 5.06805 5.10664 5.20132 5.28462 5.43744 5.63190 5.67830 5.70582 5.83899 6.05767 6.30360 6.31812 6.40889 6.55933 6.87018 7.46251 8.93410 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011481 B = 0.004433 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.177588 B = 6315.231155 C = 8003.445239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.324 6.324 3 C 0.211 3.789 4 C -0.233 4.233 5 C 0.047 3.953 6 C -0.295 4.295 7 C 0.237 3.763 8 C -0.194 4.194 9 N -0.530 5.530 10 C 0.275 3.725 11 N -0.552 5.552 12 C 0.046 3.954 13 C 0.225 3.775 14 H 0.024 0.976 15 C -0.163 4.163 16 C -0.517 4.517 17 H 0.053 0.947 18 C 0.019 3.981 19 N -0.915 5.915 20 Si 0.954 3.046 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.485 3.515 25 O -0.485 6.485 26 C 0.405 3.595 27 O -0.409 6.409 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.181 0.819 32 H 0.169 0.831 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.024 0.976 39 H 0.068 0.932 40 H 0.029 0.971 41 H 0.030 0.970 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.125 5.429 7.319 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.236 6.236 3 C 0.163 3.837 4 C -0.252 4.252 5 C 0.028 3.972 6 C -0.299 4.299 7 C 0.140 3.860 8 C -0.216 4.216 9 N -0.254 5.254 10 C 0.065 3.935 11 N -0.277 5.277 12 C -0.102 4.102 13 C 0.118 3.882 14 H 0.042 0.958 15 C -0.222 4.222 16 C -0.556 4.556 17 H 0.071 0.929 18 C -0.180 4.180 19 N -0.554 5.554 20 Si 0.781 3.219 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.199 1.199 24 C 0.270 3.730 25 O -0.357 6.357 26 C 0.278 3.722 27 O -0.281 6.281 28 H 0.135 0.865 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.198 0.802 32 H 0.186 0.814 33 H 0.151 0.849 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.779 5.965 7.069 20.934 hybrid contribution 1.560 -0.517 -0.556 1.735 sum -17.219 5.448 6.514 19.199 Atomic orbital electron populations 1.23578 0.74978 1.06179 1.03495 1.86073 1.24714 1.26420 1.86428 1.18993 0.90649 0.85584 0.88513 1.21264 1.02274 0.90060 1.11621 1.20583 0.89913 0.99484 0.87205 1.20282 0.95730 0.91830 1.22091 1.18061 0.81937 0.94394 0.91613 1.19444 0.92782 0.95963 1.13361 1.45862 1.06122 1.06648 1.66775 1.22122 0.87800 0.91806 0.91767 1.61953 1.44636 1.04399 1.16741 1.22154 0.94457 0.93247 1.00365 1.19076 0.90047 0.83408 0.95639 0.95766 1.22283 1.00910 1.02404 0.96602 1.21248 1.39587 1.02432 0.92314 0.92871 1.25558 0.95344 0.96135 1.00965 1.69963 1.42711 1.09425 1.33319 0.85669 0.78318 0.77184 0.80772 1.20129 1.20865 1.19942 1.21564 0.91944 0.83144 0.76332 1.90747 1.32062 1.67816 1.45103 1.22146 0.89199 0.88458 0.72368 1.90562 1.83986 1.18531 1.35023 0.86475 0.90027 0.90566 0.80197 0.81356 0.84933 0.87176 0.91470 0.91915 0.93396 0.95798 0.91354 0.95146 0.95143 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.80 113.37 1.11 1.20 16 2 O -0.32 -6.07 10.48 -89.42 -0.94 -7.01 16 3 C 0.21 4.25 6.69 22.68 0.15 4.40 16 4 C -0.23 -3.27 8.97 22.14 0.20 -3.07 16 5 C 0.05 0.77 10.05 22.26 0.22 1.00 16 6 C -0.29 -7.33 6.33 -19.99 -0.13 -7.46 16 7 C 0.24 6.67 6.73 38.63 0.26 6.93 16 8 C -0.19 -5.06 9.72 22.53 0.22 -4.85 16 9 N -0.53 -17.29 2.95 -642.16 -1.90 -19.19 16 10 C 0.28 9.73 4.63 170.81 0.79 10.52 16 11 N -0.55 -23.18 4.84 -913.84 -4.42 -27.60 16 12 C 0.05 1.92 8.72 127.69 1.11 3.03 16 13 C 0.22 10.78 2.27 44.17 0.10 10.88 16 14 H 0.02 1.26 7.93 -2.39 -0.02 1.24 16 15 C -0.16 -7.51 8.34 71.98 0.60 -6.91 16 16 C -0.52 -27.53 7.94 25.60 0.20 -27.33 16 17 H 0.05 2.88 6.75 -2.91 -0.02 2.86 16 18 C 0.02 1.03 5.30 84.65 0.45 1.48 16 19 N -0.91 -50.38 11.32 21.45 0.24 -50.13 16 20 Si 0.95 42.89 29.54 68.60 2.03 44.92 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.49 16.74 7.40 87.48 0.65 17.39 16 25 O -0.48 -19.25 16.41 -3.12 -0.05 -19.30 16 26 C 0.40 12.23 7.95 27.79 0.22 12.45 16 27 O -0.41 -13.39 18.03 -3.40 -0.06 -13.45 16 28 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.32 7.64 -2.39 -0.02 0.31 16 30 H 0.08 0.41 7.64 -2.38 -0.02 0.39 16 31 H 0.18 1.05 6.25 -2.91 -0.02 1.03 16 32 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.13 3.81 7.78 -2.91 -0.02 3.79 16 34 H 0.11 3.60 7.30 -2.38 -0.02 3.58 16 35 H 0.07 2.40 7.39 -2.39 -0.02 2.38 16 36 H 0.06 2.76 6.53 -2.39 -0.02 2.75 16 37 H 0.05 1.94 5.93 -2.39 -0.01 1.93 16 38 H 0.02 0.99 6.27 -2.38 -0.01 0.97 16 39 H 0.07 3.51 6.07 -2.39 -0.01 3.50 16 40 H 0.03 1.39 6.39 -2.39 -0.02 1.37 16 41 H 0.03 1.22 7.13 -2.39 -0.02 1.20 16 42 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -66.13 347.26 2.13 -64.00 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 1.06 Total: 8.09 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 6.16 Total: 19.67 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -6.08 Total: -96.93 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.05 Total: -39.76 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -66.13 2.13 -64.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103460819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.214 kcal (2) G-P(sol) polarization free energy of solvation -66.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds