Wall clock time and date at job start Tue Mar 31 2020 12:49:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.35630 * 117.00113 * 2 1
4 4 C 1.39203 * 119.72616 * 0.02562 * 3 2 1
5 5 C 1.36676 * 120.16336 * 180.02562 * 4 3 2
6 6 C 1.39712 * 119.89752 * 0.02562 * 5 4 3
7 7 C 1.40664 * 120.39958 * 359.97438 * 6 5 4
8 8 C 1.38582 * 118.98621 * 359.97438 * 7 6 5
9 9 N 1.39303 * 109.58189 * 179.97438 * 7 6 5
10 10 C 1.46507 * 124.31644 * 180.02562 * 9 7 6
11 11 N 1.46895 * 109.47306 * 89.99463 * 10 9 7
12 12 C 1.46904 * 110.99841 * 81.04778 * 11 10 9
13 13 C 1.46899 * 111.00230 * 204.99922 * 11 10 9
14 14 H 1.09002 * 109.47043 * 55.00375 * 13 11 10
15 15 C 1.52997 * 109.47254 * 295.00304 * 13 11 10
16 16 C 1.50699 * 109.47244 * 175.00202 * 13 11 10
17 17 H 1.08000 * 119.99792 * 0.02562 * 16 13 11
18 18 C 1.37878 * 119.99902 * 179.97438 * 16 13 11
19 19 N 1.31515 * 120.00126 * 0.02562 * 18 16 13
20 20 Si 1.86803 * 119.99745 * 180.02562 * 18 16 13
21 21 H 1.48496 * 109.47319 * 60.00570 * 20 18 16
22 22 H 1.48503 * 109.46734 * 180.02562 * 20 18 16
23 23 H 1.48503 * 109.47266 * 300.00384 * 20 18 16
24 24 C 1.34421 * 111.36480 * 0.26354 * 9 7 6
25 25 O 1.21310 * 126.22132 * 179.73478 * 24 9 7
26 26 C 1.47143 * 133.00143 * 179.97438 * 6 5 4
27 27 O 1.21401 * 127.55272 * 0.02562 * 26 6 5
28 28 H 1.09003 * 109.47223 * 179.97438 * 1 2 3
29 29 H 1.08998 * 109.47262 * 299.99548 * 1 2 3
30 30 H 1.09005 * 109.47070 * 59.99872 * 1 2 3
31 31 H 1.07998 * 119.91503 * 0.02562 * 4 3 2
32 32 H 1.07992 * 120.04796 * 179.97438 * 5 4 3
33 33 H 1.08000 * 119.99660 * 179.97438 * 8 7 6
34 34 H 1.09005 * 109.46811 * 329.99754 * 10 9 7
35 35 H 1.08996 * 109.47282 * 210.00128 * 10 9 7
36 36 H 1.08992 * 109.47139 * 183.95276 * 12 11 10
37 37 H 1.08998 * 109.46871 * 303.95426 * 12 11 10
38 38 H 1.09004 * 109.46908 * 63.95125 * 12 11 10
39 39 H 1.08996 * 109.47853 * 179.97438 * 15 13 11
40 40 H 1.09002 * 109.47153 * 300.00004 * 15 13 11
41 41 H 1.08998 * 109.47533 * 59.99633 * 15 13 11
42 42 H 0.96999 * 120.00073 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0448 1.2085 0.0000
4 6 1.2811 2.3723 0.0005
5 6 1.8923 3.5948 0.0000
6 6 3.2870 3.6760 -0.0016
7 6 4.0682 2.5062 -0.0022
8 6 3.4330 1.2745 -0.0005
9 7 5.4189 2.8468 -0.0044
10 6 6.5157 1.8754 -0.0061
11 7 6.8799 1.5504 -1.3916
12 6 7.7580 2.5816 -1.9607
13 6 7.5041 0.2232 -1.4744
14 1 6.8409 -0.5186 -1.0295
15 6 8.8341 0.2370 -0.7183
16 6 7.7512 -0.1263 -2.9193
17 1 7.4729 0.5682 -3.6981
18 6 8.3337 -1.3324 -3.2469
19 7 8.6731 -2.1779 -2.2984
20 14 8.6407 -1.7653 -5.0379
21 1 9.5441 -0.7545 -5.6437
22 1 9.2716 -3.1071 -5.1216
23 1 7.3500 -1.7790 -5.7722
24 6 5.5877 4.1803 0.0004
25 8 6.6487 4.7686 0.0044
26 6 4.2263 4.8087 -0.0030
27 8 3.9578 5.9926 -0.0026
28 1 -0.3634 -1.0277 -0.0005
29 1 -0.3634 0.5137 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 0.2029 2.3090 0.0014
32 1 1.2980 4.4965 0.0000
33 1 4.0168 0.3659 -0.0014
34 1 6.1983 0.9683 0.5084
35 1 7.3786 2.3007 0.5063
36 1 7.9555 2.3530 -3.0079
37 1 7.2716 3.5542 -1.8865
38 1 8.6983 2.6025 -1.4097
39 1 9.2971 -0.7478 -0.7794
40 1 9.4973 0.9789 -1.1633
41 1 8.6554 0.4899 0.3267
42 1 9.0825 -3.0265 -2.5289
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000103460819.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:49:38
Heat of formation + Delta-G solvation = -50.789576 kcal
Electronic energy + Delta-G solvation = -26980.395367 eV
Core-core repulsion = 23120.014240 eV
Total energy + Delta-G solvation = -3860.381127 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 318.141 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-43.04764 -40.88907 -39.80431 -39.02458 -38.66905 -36.44428 -34.68690 -32.43214
-31.58306 -30.21871 -28.87414 -28.17312 -27.28245 -26.77755 -24.98475 -23.66287
-22.65843 -21.73820 -20.94894 -19.30810 -18.63154 -18.14280 -18.00649 -17.80521
-17.10601 -16.94091 -16.65784 -16.62640 -16.22451 -16.09032 -15.45251 -15.07253
-14.93750 -14.75692 -14.51373 -14.41623 -14.07855 -13.93536 -13.52923 -13.40118
-13.04635 -13.01179 -12.91185 -12.75038 -12.65552 -12.45002 -12.30804 -12.05701
-11.94669 -11.86458 -11.47943 -10.97653 -10.73394 -10.50105 -9.63491 -9.30954
-9.08780 -8.12159 -6.22285 -1.09274 0.18039 0.63553 1.16127 1.44154
1.44316 1.52017 1.75584 2.09420 2.42074 2.53489 2.61106 3.17301
3.24055 3.32110 3.50751 3.80458 3.91469 4.01575 4.10292 4.20566
4.41498 4.44420 4.50580 4.51574 4.61033 4.70244 4.80065 4.84178
4.87131 5.01580 5.04696 5.06805 5.10664 5.20132 5.28462 5.43744
5.63190 5.67830 5.70582 5.83899 6.05767 6.30360 6.31812 6.40889
6.55933 6.87018 7.46251 8.93410
Molecular weight = 318.14amu
Principal moments of inertia in cm(-1)
A = 0.011481 B = 0.004433 C = 0.003498
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2438.177588 B = 6315.231155 C = 8003.445239
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.011 3.989
2 O -0.324 6.324
3 C 0.211 3.789
4 C -0.233 4.233
5 C 0.047 3.953
6 C -0.295 4.295
7 C 0.237 3.763
8 C -0.194 4.194
9 N -0.530 5.530
10 C 0.275 3.725
11 N -0.552 5.552
12 C 0.046 3.954
13 C 0.225 3.775
14 H 0.024 0.976
15 C -0.163 4.163
16 C -0.517 4.517
17 H 0.053 0.947
18 C 0.019 3.981
19 N -0.915 5.915
20 Si 0.954 3.046
21 H -0.276 1.276
22 H -0.283 1.283
23 H -0.274 1.274
24 C 0.485 3.515
25 O -0.485 6.485
26 C 0.405 3.595
27 O -0.409 6.409
28 H 0.117 0.883
29 H 0.081 0.919
30 H 0.076 0.924
31 H 0.181 0.819
32 H 0.169 0.831
33 H 0.133 0.867
34 H 0.110 0.890
35 H 0.067 0.933
36 H 0.062 0.938
37 H 0.047 0.953
38 H 0.024 0.976
39 H 0.068 0.932
40 H 0.029 0.971
41 H 0.030 0.970
42 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.125 5.429 7.319 21.185
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.082 4.082
2 O -0.236 6.236
3 C 0.163 3.837
4 C -0.252 4.252
5 C 0.028 3.972
6 C -0.299 4.299
7 C 0.140 3.860
8 C -0.216 4.216
9 N -0.254 5.254
10 C 0.065 3.935
11 N -0.277 5.277
12 C -0.102 4.102
13 C 0.118 3.882
14 H 0.042 0.958
15 C -0.222 4.222
16 C -0.556 4.556
17 H 0.071 0.929
18 C -0.180 4.180
19 N -0.554 5.554
20 Si 0.781 3.219
21 H -0.201 1.201
22 H -0.209 1.209
23 H -0.199 1.199
24 C 0.270 3.730
25 O -0.357 6.357
26 C 0.278 3.722
27 O -0.281 6.281
28 H 0.135 0.865
29 H 0.100 0.900
30 H 0.094 0.906
31 H 0.198 0.802
32 H 0.186 0.814
33 H 0.151 0.849
34 H 0.128 0.872
35 H 0.085 0.915
36 H 0.081 0.919
37 H 0.066 0.934
38 H 0.042 0.958
39 H 0.086 0.914
40 H 0.049 0.951
41 H 0.049 0.951
42 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -18.779 5.965 7.069 20.934
hybrid contribution 1.560 -0.517 -0.556 1.735
sum -17.219 5.448 6.514 19.199
Atomic orbital electron populations
1.23578 0.74978 1.06179 1.03495 1.86073 1.24714 1.26420 1.86428
1.18993 0.90649 0.85584 0.88513 1.21264 1.02274 0.90060 1.11621
1.20583 0.89913 0.99484 0.87205 1.20282 0.95730 0.91830 1.22091
1.18061 0.81937 0.94394 0.91613 1.19444 0.92782 0.95963 1.13361
1.45862 1.06122 1.06648 1.66775 1.22122 0.87800 0.91806 0.91767
1.61953 1.44636 1.04399 1.16741 1.22154 0.94457 0.93247 1.00365
1.19076 0.90047 0.83408 0.95639 0.95766 1.22283 1.00910 1.02404
0.96602 1.21248 1.39587 1.02432 0.92314 0.92871 1.25558 0.95344
0.96135 1.00965 1.69963 1.42711 1.09425 1.33319 0.85669 0.78318
0.77184 0.80772 1.20129 1.20865 1.19942 1.21564 0.91944 0.83144
0.76332 1.90747 1.32062 1.67816 1.45103 1.22146 0.89199 0.88458
0.72368 1.90562 1.83986 1.18531 1.35023 0.86475 0.90027 0.90566
0.80197 0.81356 0.84933 0.87176 0.91470 0.91915 0.93396 0.95798
0.91354 0.95146 0.95143 0.92827
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.09 9.80 113.37 1.11 1.20 16
2 O -0.32 -6.07 10.48 -89.42 -0.94 -7.01 16
3 C 0.21 4.25 6.69 22.68 0.15 4.40 16
4 C -0.23 -3.27 8.97 22.14 0.20 -3.07 16
5 C 0.05 0.77 10.05 22.26 0.22 1.00 16
6 C -0.29 -7.33 6.33 -19.99 -0.13 -7.46 16
7 C 0.24 6.67 6.73 38.63 0.26 6.93 16
8 C -0.19 -5.06 9.72 22.53 0.22 -4.85 16
9 N -0.53 -17.29 2.95 -642.16 -1.90 -19.19 16
10 C 0.28 9.73 4.63 170.81 0.79 10.52 16
11 N -0.55 -23.18 4.84 -913.84 -4.42 -27.60 16
12 C 0.05 1.92 8.72 127.69 1.11 3.03 16
13 C 0.22 10.78 2.27 44.17 0.10 10.88 16
14 H 0.02 1.26 7.93 -2.39 -0.02 1.24 16
15 C -0.16 -7.51 8.34 71.98 0.60 -6.91 16
16 C -0.52 -27.53 7.94 25.60 0.20 -27.33 16
17 H 0.05 2.88 6.75 -2.91 -0.02 2.86 16
18 C 0.02 1.03 5.30 84.65 0.45 1.48 16
19 N -0.91 -50.38 11.32 21.45 0.24 -50.13 16
20 Si 0.95 42.89 29.54 68.60 2.03 44.92 16
21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16
22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16
24 C 0.49 16.74 7.40 87.48 0.65 17.39 16
25 O -0.48 -19.25 16.41 -3.12 -0.05 -19.30 16
26 C 0.40 12.23 7.95 27.79 0.22 12.45 16
27 O -0.41 -13.39 18.03 -3.40 -0.06 -13.45 16
28 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16
29 H 0.08 0.32 7.64 -2.39 -0.02 0.31 16
30 H 0.08 0.41 7.64 -2.38 -0.02 0.39 16
31 H 0.18 1.05 6.25 -2.91 -0.02 1.03 16
32 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16
33 H 0.13 3.81 7.78 -2.91 -0.02 3.79 16
34 H 0.11 3.60 7.30 -2.38 -0.02 3.58 16
35 H 0.07 2.40 7.39 -2.39 -0.02 2.38 16
36 H 0.06 2.76 6.53 -2.39 -0.02 2.75 16
37 H 0.05 1.94 5.93 -2.39 -0.01 1.93 16
38 H 0.02 0.99 6.27 -2.38 -0.01 0.97 16
39 H 0.07 3.51 6.07 -2.39 -0.01 3.50 16
40 H 0.03 1.39 6.39 -2.39 -0.02 1.37 16
41 H 0.03 1.22 7.13 -2.39 -0.02 1.20 16
42 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16
Total: -1.00 -66.13 347.26 2.13 -64.00
By element:
Atomic # 1 Polarization: 7.03 SS G_CDS: 1.06 Total: 8.09 kcal
Atomic # 6 Polarization: 13.51 SS G_CDS: 6.16 Total: 19.67 kcal
Atomic # 7 Polarization: -90.85 SS G_CDS: -6.08 Total: -96.93 kcal
Atomic # 8 Polarization: -38.71 SS G_CDS: -1.05 Total: -39.76 kcal
Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal
Total: -66.13 2.13 -64.00 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000103460819.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.214 kcal
(2) G-P(sol) polarization free energy of solvation -66.134 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.919 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.004 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.790 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds