Wall clock time and date at job start Tue Mar 31 2020 13:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46505 * 109.47008 * 2 1 4 4 C 1.46496 * 120.00029 * 72.66557 * 3 2 1 5 5 C 1.50710 * 109.46608 * 90.00466 * 4 3 2 6 6 H 1.07993 * 119.99878 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99616 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00296 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99495 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47176 * 269.99771 * 9 7 5 11 11 H 1.48494 * 109.47444 * 30.00012 * 9 7 5 12 12 H 1.48501 * 109.46920 * 150.00273 * 9 7 5 13 13 C 1.34773 * 119.99641 * 252.67520 * 3 2 1 14 14 O 1.21594 * 119.99956 * 181.74518 * 13 3 2 15 15 C 1.47547 * 120.00411 * 1.74058 * 13 3 2 16 16 C 1.39882 * 120.23448 * 26.39012 * 15 13 3 17 17 C 1.37772 * 120.09582 * 179.97438 * 16 15 13 18 18 C 1.38584 * 120.41626 * 0.02909 * 17 16 15 19 19 C 1.38392 * 120.15731 * 359.97438 * 18 17 16 20 20 C 1.39414 * 120.07022 * 359.74058 * 19 18 17 21 21 O 1.35687 * 119.56159 * 179.68735 * 20 19 18 22 22 C 1.42999 * 116.86998 * 327.73186 * 21 20 19 23 23 H 1.09003 * 109.43794 * 286.08073 * 22 21 20 24 24 C 1.52998 * 109.41508 * 166.16535 * 22 21 20 25 25 C 1.50751 * 109.63486 * 46.12908 * 22 21 20 26 26 O 1.21297 * 120.13843 * 148.69661 * 25 22 21 27 27 N 1.35096 * 119.72849 * 328.71398 * 25 22 21 28 28 H 1.09001 * 109.46867 * 300.00226 * 1 2 3 29 29 H 1.09000 * 109.47384 * 60.00359 * 1 2 3 30 30 H 1.08994 * 109.46760 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47162 * 239.99744 * 2 1 3 32 32 H 1.08994 * 109.47085 * 119.99357 * 2 1 3 33 33 H 1.08997 * 109.47609 * 330.00852 * 4 3 2 34 34 H 1.09001 * 109.47253 * 209.99937 * 4 3 2 35 35 H 0.97000 * 119.99927 * 180.02562 * 8 7 5 36 36 H 1.08001 * 119.95126 * 359.97438 * 16 15 13 37 37 H 1.07994 * 119.79126 * 179.97438 * 17 16 15 38 38 H 1.07998 * 119.91835 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47311 * 299.84200 * 24 22 21 40 40 H 1.08992 * 109.47735 * 59.85067 * 24 22 21 41 41 H 1.09004 * 109.46680 * 179.85077 * 24 22 21 42 42 H 0.96994 * 120.52125 * 181.71878 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 1.9061 2.1979 1.2111 5 6 3.1466 2.0258 2.0496 6 1 3.9392 1.3738 1.7137 7 6 3.2697 2.7017 3.2450 8 7 2.3050 3.4968 3.6533 9 14 4.8075 2.4889 4.2839 10 1 4.6146 1.3590 5.2281 11 1 5.9663 2.2033 3.4004 12 1 5.0640 3.7353 5.0495 13 6 2.5707 1.9007 -1.1143 14 8 3.0048 3.0365 -1.1050 15 6 2.6487 1.0912 -2.3454 16 6 1.7259 0.0649 -2.5732 17 6 1.8010 -0.6888 -3.7240 18 6 2.7888 -0.4386 -4.6633 19 6 3.7090 0.5732 -4.4520 20 6 3.6417 1.3481 -3.2950 21 8 4.5531 2.3333 -3.0952 22 6 5.8656 2.1156 -3.6194 23 1 6.3864 1.3844 -3.0011 24 6 6.6415 3.4342 -3.6117 25 6 5.7676 1.5992 -5.0323 26 8 6.6321 1.8668 -5.8399 27 7 4.7127 0.8373 -5.3954 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.0341 1.8814 1.7832 34 1 1.7978 3.2464 0.9336 35 1 2.3919 3.9726 4.4942 36 1 0.9533 -0.1368 -1.8460 37 1 1.0863 -1.4802 -3.8947 38 1 2.8405 -1.0347 -5.5624 39 1 6.1216 4.1653 -4.2308 40 1 6.7127 3.8080 -2.5904 41 1 7.6431 3.2687 -4.0086 42 1 4.6505 0.4784 -6.2943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105328358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:39 Heat of formation + Delta-G solvation = -42.507925 kcal Electronic energy + Delta-G solvation = -27373.873305 eV Core-core repulsion = 23513.851297 eV Total energy + Delta-G solvation = -3860.022008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.68463 -39.78686 -38.33802 -37.59635 -35.59112 -35.11844 -32.83246 -32.15584 -30.73121 -30.22431 -28.97979 -27.20792 -25.11211 -23.99458 -23.59387 -22.94594 -22.07201 -19.82657 -19.63888 -18.62272 -17.68531 -17.30570 -16.51022 -16.41640 -15.92734 -15.41830 -15.29078 -14.88161 -14.71215 -14.60278 -14.24698 -13.93489 -13.67702 -13.22944 -12.98036 -12.95639 -12.31494 -12.26472 -12.18375 -12.14515 -11.97555 -11.66423 -11.38854 -11.28672 -11.17171 -11.09391 -10.88030 -10.57788 -10.34122 -10.14586 -10.08482 -9.61865 -8.99372 -8.66795 -8.41780 -8.07830 -7.64334 -6.02781 -4.06898 0.77226 0.97096 2.08866 2.53381 3.13428 3.21140 3.30898 3.37905 3.42159 3.68443 3.89894 4.02143 4.42725 4.48994 4.67089 4.75566 4.82884 4.97001 5.00987 5.14350 5.31252 5.34552 5.43699 5.55527 5.60845 5.69122 5.73211 5.77113 5.92562 5.96910 6.06306 6.19145 6.25399 6.25684 6.46122 6.52306 6.58630 7.06762 7.25254 7.45695 7.54680 7.57095 7.93784 8.25041 8.40090 8.91546 9.09442 9.57862 11.05327 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013203 B = 0.004619 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.300903 B = 6060.465805 C = 7682.879340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.073 3.927 3 N -0.588 5.588 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.274 1.274 12 H -0.285 1.285 13 C 0.545 3.455 14 O -0.514 6.514 15 C -0.112 4.112 16 C -0.107 4.107 17 C -0.124 4.124 18 C -0.108 4.108 19 C 0.074 3.926 20 C 0.133 3.867 21 O -0.267 6.267 22 C 0.073 3.927 23 H 0.105 0.895 24 C -0.133 4.133 25 C 0.495 3.505 26 O -0.511 6.511 27 N -0.659 5.659 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.169 0.831 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.912 -11.164 -16.043 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.051 4.051 3 N -0.320 5.320 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.211 1.211 13 C 0.331 3.669 14 O -0.390 6.390 15 C -0.117 4.117 16 C -0.125 4.125 17 C -0.143 4.143 18 C -0.129 4.129 19 C -0.021 4.021 20 C 0.084 3.916 21 O -0.180 6.180 22 C 0.013 3.987 23 H 0.122 0.878 24 C -0.191 4.191 25 C 0.282 3.718 26 O -0.385 6.385 27 N -0.306 5.306 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.186 0.814 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -0.182 -9.956 -16.045 18.884 hybrid contribution 0.770 -0.596 0.106 0.979 sum 0.587 -10.552 -15.939 19.125 Atomic orbital electron populations 1.22260 0.96435 1.01778 1.02992 1.22275 0.93994 0.84948 1.03852 1.48109 1.58213 1.12914 1.12791 1.19285 0.97063 0.91268 0.79497 1.21420 1.03396 1.27233 1.04210 0.92494 1.24915 0.96568 0.94940 0.97614 1.69928 1.32539 1.28846 1.22109 0.86518 0.83407 0.77494 0.80128 1.20691 1.19924 1.21104 1.17796 0.79800 0.86705 0.82560 1.90809 1.46034 1.18256 1.83918 1.19820 0.98054 0.98641 0.95170 1.22301 0.99241 0.93257 0.97744 1.20909 0.98805 1.01047 0.93537 1.20701 0.95183 0.96178 1.00797 1.17922 0.93927 0.99393 0.90831 1.18570 0.92309 0.89062 0.91644 1.86526 1.18400 1.38178 1.74884 1.22726 0.84609 1.01791 0.89557 0.87786 1.21693 0.99316 0.93334 1.04729 1.21691 0.80924 0.77396 0.91817 1.90765 1.38682 1.56172 1.52911 1.43693 1.20559 1.51754 1.14635 0.91101 0.92435 0.91807 0.88756 0.90577 0.94733 0.93773 0.92750 0.81396 0.84586 0.84915 0.91078 0.89517 0.89291 0.74689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.11 37.16 0.34 -1.88 16 2 C 0.07 1.12 5.62 -4.04 -0.02 1.09 16 3 N -0.59 -12.28 2.51 -176.28 -0.44 -12.73 16 4 C 0.25 6.37 5.08 -5.19 -0.03 6.34 16 5 C -0.52 -14.72 9.39 -34.44 -0.32 -15.04 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 9 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.55 11.71 7.42 -12.47 -0.09 11.62 16 14 O -0.51 -13.32 15.25 -14.36 -0.22 -13.54 16 15 C -0.11 -1.86 5.57 -104.91 -0.58 -2.44 16 16 C -0.11 -1.30 7.46 -39.14 -0.29 -1.59 16 17 C -0.12 -1.13 10.02 -39.62 -0.40 -1.53 16 18 C -0.11 -0.99 9.94 -39.40 -0.39 -1.39 16 19 C 0.07 0.91 6.54 -83.51 -0.55 0.37 16 20 C 0.13 2.12 6.42 -38.57 -0.25 1.87 16 21 O -0.27 -4.70 8.53 -38.40 -0.33 -5.03 16 22 C 0.07 1.02 3.69 -27.86 -0.10 0.92 16 23 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 24 C -0.13 -1.69 9.14 37.16 0.34 -1.35 16 25 C 0.49 6.69 7.65 -10.82 -0.08 6.61 16 26 O -0.51 -7.80 17.01 5.54 0.09 -7.71 16 27 N -0.66 -7.46 5.48 -9.68 -0.05 -7.51 16 28 H 0.07 1.03 7.28 -51.93 -0.38 0.65 16 29 H 0.06 0.68 7.10 -51.93 -0.37 0.31 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.21 3.86 -53.22 -0.21 1.00 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.03 0.89 7.17 -51.93 -0.37 0.51 16 34 H 0.04 1.29 7.45 -51.93 -0.39 0.90 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.17 1.84 2.81 -52.49 -0.15 1.69 16 37 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.09 0.98 7.86 -51.93 -0.41 0.57 16 42 H 0.41 3.54 8.89 -40.82 -0.36 3.18 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -35.44 346.78 -7.67 -43.11 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.13 Total: 1.84 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -2.53 Total: 5.24 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.24 Total: -45.89 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.45 Total: -26.28 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.44 -7.67 -43.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105328358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.598 kcal (2) G-P(sol) polarization free energy of solvation -35.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds