Wall clock time and date at job start Tue Mar 31 2020 13:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46505 * 109.47008 * 2 1 4 4 C 1.46496 * 120.00029 * 72.66557 * 3 2 1 5 5 C 1.50710 * 109.46608 * 90.00466 * 4 3 2 6 6 H 1.07993 * 119.99878 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99616 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00296 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99495 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47176 * 269.99771 * 9 7 5 11 11 H 1.48494 * 109.47444 * 30.00012 * 9 7 5 12 12 H 1.48501 * 109.46920 * 150.00273 * 9 7 5 13 13 C 1.34773 * 119.99641 * 252.67520 * 3 2 1 14 14 O 1.21594 * 119.99956 * 181.74518 * 13 3 2 15 15 C 1.47547 * 120.00411 * 1.74058 * 13 3 2 16 16 C 1.39882 * 120.23448 * 26.39012 * 15 13 3 17 17 C 1.37772 * 120.09582 * 179.97438 * 16 15 13 18 18 C 1.38584 * 120.41626 * 0.02909 * 17 16 15 19 19 C 1.38392 * 120.15731 * 359.97438 * 18 17 16 20 20 C 1.39414 * 120.07022 * 359.74058 * 19 18 17 21 21 O 1.35687 * 119.56159 * 179.68735 * 20 19 18 22 22 C 1.42999 * 116.86998 * 327.73186 * 21 20 19 23 23 H 1.09003 * 109.43794 * 286.08073 * 22 21 20 24 24 C 1.52998 * 109.41508 * 166.16535 * 22 21 20 25 25 C 1.50751 * 109.63486 * 46.12908 * 22 21 20 26 26 O 1.21297 * 120.13843 * 148.69661 * 25 22 21 27 27 N 1.35096 * 119.72849 * 328.71398 * 25 22 21 28 28 H 1.09001 * 109.46867 * 300.00226 * 1 2 3 29 29 H 1.09000 * 109.47384 * 60.00359 * 1 2 3 30 30 H 1.08994 * 109.46760 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47162 * 239.99744 * 2 1 3 32 32 H 1.08994 * 109.47085 * 119.99357 * 2 1 3 33 33 H 1.08997 * 109.47609 * 330.00852 * 4 3 2 34 34 H 1.09001 * 109.47253 * 209.99937 * 4 3 2 35 35 H 0.97000 * 119.99927 * 180.02562 * 8 7 5 36 36 H 1.08001 * 119.95126 * 359.97438 * 16 15 13 37 37 H 1.07994 * 119.79126 * 179.97438 * 17 16 15 38 38 H 1.07998 * 119.91835 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47311 * 299.84200 * 24 22 21 40 40 H 1.08992 * 109.47735 * 59.85067 * 24 22 21 41 41 H 1.09004 * 109.46680 * 179.85077 * 24 22 21 42 42 H 0.96994 * 120.52125 * 181.71878 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 1.9061 2.1979 1.2111 5 6 3.1466 2.0258 2.0496 6 1 3.9392 1.3738 1.7137 7 6 3.2697 2.7017 3.2450 8 7 2.3050 3.4968 3.6533 9 14 4.8075 2.4889 4.2839 10 1 4.6146 1.3590 5.2281 11 1 5.9663 2.2033 3.4004 12 1 5.0640 3.7353 5.0495 13 6 2.5707 1.9007 -1.1143 14 8 3.0048 3.0365 -1.1050 15 6 2.6487 1.0912 -2.3454 16 6 1.7259 0.0649 -2.5732 17 6 1.8010 -0.6888 -3.7240 18 6 2.7888 -0.4386 -4.6633 19 6 3.7090 0.5732 -4.4520 20 6 3.6417 1.3481 -3.2950 21 8 4.5531 2.3333 -3.0952 22 6 5.8656 2.1156 -3.6194 23 1 6.3864 1.3844 -3.0011 24 6 6.6415 3.4342 -3.6117 25 6 5.7676 1.5992 -5.0323 26 8 6.6321 1.8668 -5.8399 27 7 4.7127 0.8373 -5.3954 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.0341 1.8814 1.7832 34 1 1.7978 3.2464 0.9336 35 1 2.3919 3.9726 4.4942 36 1 0.9533 -0.1368 -1.8460 37 1 1.0863 -1.4802 -3.8947 38 1 2.8405 -1.0347 -5.5624 39 1 6.1216 4.1653 -4.2308 40 1 6.7127 3.8080 -2.5904 41 1 7.6431 3.2687 -4.0086 42 1 4.6505 0.4784 -6.2943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105328358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:38 Heat of formation + Delta-G solvation = -67.502738 kcal Electronic energy + Delta-G solvation = -27374.957161 eV Core-core repulsion = 23513.851297 eV Total energy + Delta-G solvation = -3861.105864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.74287 -41.11304 -39.60633 -38.70354 -37.11584 -36.27622 -34.87297 -33.20739 -32.11568 -31.45523 -29.97015 -29.09535 -26.25192 -25.53527 -24.73056 -24.24209 -23.43272 -20.95575 -20.82576 -19.78145 -18.97176 -18.55697 -18.36176 -17.63732 -17.24943 -16.88637 -16.48498 -16.23150 -16.03168 -15.75820 -15.65887 -15.34004 -14.84055 -14.65459 -14.31626 -13.97785 -13.93919 -13.50054 -13.31017 -13.27086 -13.17394 -13.12599 -13.00424 -12.69532 -12.56386 -12.40602 -12.26993 -12.21391 -12.05670 -11.69764 -11.44012 -11.22246 -10.62975 -10.56729 -9.78063 -9.39768 -9.04040 -8.21434 -6.35659 -0.22689 -0.02219 1.07292 1.35307 1.38752 1.48804 1.57520 1.93868 2.12404 2.27247 2.42276 2.72337 2.81746 3.07886 3.43088 3.61752 3.74992 3.80855 3.96101 4.10803 4.22936 4.30833 4.38650 4.46262 4.61230 4.64029 4.67446 4.86295 4.95718 5.00118 5.01389 5.05925 5.10252 5.22181 5.32429 5.39354 5.46597 5.59237 5.63298 5.64576 5.86560 6.08141 6.19450 6.62995 6.70947 6.78756 7.28833 7.48239 8.85520 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013203 B = 0.004619 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.300903 B = 6060.465805 C = 7682.879340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.065 3.935 3 N -0.594 5.594 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.965 3.035 10 H -0.261 1.261 11 H -0.276 1.276 12 H -0.280 1.280 13 C 0.536 3.464 14 O -0.580 6.580 15 C -0.144 4.144 16 C -0.103 4.103 17 C -0.100 4.100 18 C -0.080 4.080 19 C 0.070 3.930 20 C 0.102 3.898 21 O -0.305 6.305 22 C 0.063 3.937 23 H 0.112 0.888 24 C -0.130 4.130 25 C 0.499 3.501 26 O -0.532 6.532 27 N -0.644 5.644 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.066 0.934 33 H 0.030 0.970 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.180 0.820 37 H 0.190 0.810 38 H 0.182 0.818 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.557 -15.233 -18.165 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.056 4.056 3 N -0.324 5.324 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.201 1.201 12 H -0.206 1.206 13 C 0.325 3.675 14 O -0.461 6.461 15 C -0.149 4.149 16 C -0.121 4.121 17 C -0.118 4.118 18 C -0.100 4.100 19 C -0.025 4.025 20 C 0.054 3.946 21 O -0.219 6.219 22 C 0.004 3.996 23 H 0.130 0.870 24 C -0.187 4.187 25 C 0.286 3.714 26 O -0.408 6.408 27 N -0.292 5.292 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.127 0.873 31 H 0.146 0.854 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.197 0.803 37 H 0.207 0.793 38 H 0.199 0.801 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -0.874 -14.102 -18.189 23.032 hybrid contribution 0.888 0.614 0.689 1.281 sum 0.014 -13.488 -17.500 22.095 Atomic orbital electron populations 1.22218 0.93903 1.04423 1.02145 1.22700 0.96056 0.81798 1.05066 1.48109 1.58400 1.14669 1.11252 1.18708 0.96169 0.89612 0.81208 1.21668 1.03952 1.27382 1.04931 0.93323 1.25815 0.99841 0.94402 0.98889 1.70045 1.34472 1.29508 1.22687 0.85453 0.79029 0.78125 0.78428 1.18567 1.20079 1.20582 1.18672 0.78215 0.86521 0.84090 1.90750 1.48804 1.21249 1.85300 1.19508 1.01114 1.00667 0.93585 1.22448 0.98149 0.92033 0.99514 1.21476 0.98687 1.00464 0.91209 1.21327 0.92686 0.94072 1.01922 1.18028 0.94891 0.99827 0.89788 1.18900 0.92443 0.89949 0.93289 1.86483 1.19769 1.39806 1.75885 1.22893 0.83782 1.02476 0.90468 0.87030 1.21684 1.00076 0.92934 1.04018 1.21453 0.81283 0.77522 0.91159 1.90754 1.39656 1.57210 1.53187 1.43487 1.19539 1.50931 1.15261 0.93891 0.91420 0.87253 0.85369 0.91580 0.95178 0.98731 0.92409 0.80308 0.79318 0.80058 0.91811 0.90566 0.87470 0.72701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 9.11 71.98 0.66 -3.28 16 2 C 0.06 1.95 5.62 86.38 0.49 2.43 16 3 N -0.59 -26.06 2.51 -829.89 -2.08 -28.14 16 4 C 0.26 14.58 5.08 85.64 0.43 15.01 16 5 C -0.54 -31.97 9.39 25.60 0.24 -31.73 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.56 5.46 84.65 0.46 1.02 16 8 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 9 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.54 24.44 7.42 86.70 0.64 25.09 16 14 O -0.58 -32.91 15.25 14.77 0.23 -32.69 16 15 C -0.14 -4.78 5.57 -20.05 -0.11 -4.89 16 16 C -0.10 -2.15 7.46 22.56 0.17 -1.98 16 17 C -0.10 -1.18 10.02 22.24 0.22 -0.96 16 18 C -0.08 -0.99 9.94 22.39 0.22 -0.77 16 19 C 0.07 1.51 6.54 38.11 0.25 1.76 16 20 C 0.10 3.27 6.42 22.93 0.15 3.41 16 21 O -0.31 -11.42 8.53 -71.28 -0.61 -12.03 16 22 C 0.06 1.84 3.69 29.86 0.11 1.95 16 23 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 24 C -0.13 -3.51 9.14 71.98 0.66 -2.86 16 25 C 0.50 13.17 7.65 87.62 0.67 13.84 16 26 O -0.53 -15.86 17.01 -3.08 -0.05 -15.91 16 27 N -0.64 -12.98 5.48 -302.72 -1.66 -14.64 16 28 H 0.04 1.25 7.28 -2.39 -0.02 1.23 16 29 H 0.07 1.44 7.10 -2.39 -0.02 1.43 16 30 H 0.11 1.57 8.14 -2.39 -0.02 1.56 16 31 H 0.13 2.98 3.86 -3.60 -0.01 2.96 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 33 H 0.03 1.66 7.17 -2.39 -0.02 1.64 16 34 H -0.01 -0.35 7.45 -2.39 -0.02 -0.37 16 35 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.18 3.25 2.81 -2.91 -0.01 3.24 16 37 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 38 H 0.18 0.63 8.06 -2.91 -0.02 0.60 16 39 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.11 2.43 7.86 -2.39 -0.02 2.41 16 42 H 0.43 5.79 8.89 -92.71 -0.82 4.96 16 Total: -1.00 -86.76 346.78 3.64 -83.11 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.25 Total: 11.00 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 5.26 Total: 18.05 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -3.45 Total: -99.29 kcal Atomic # 8 Polarization: -60.19 SS G_CDS: -0.44 Total: -60.63 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -86.76 3.64 -83.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105328358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.612 kcal (2) G-P(sol) polarization free energy of solvation -86.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds