Wall clock time and date at job start Tue Mar 31 2020 12:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.88816 * 2 1 4 4 C 1.55128 * 111.19466 * 236.06585 * 2 1 3 5 5 N 1.47430 * 104.72117 * 279.19332 * 4 2 1 6 6 C 1.34781 * 125.64635 * 155.81605 * 5 4 2 7 7 O 1.21582 * 120.00119 * 359.71480 * 6 5 4 8 8 N 1.34775 * 119.99804 * 179.71550 * 6 5 4 9 9 C 1.39239 * 119.99954 * 186.32858 * 8 6 5 10 10 C 1.39484 * 119.83476 * 216.73700 * 9 8 6 11 11 C 1.36372 * 120.16849 * 179.97438 * 10 9 8 12 12 C 1.40860 * 119.83075 * 359.97438 * 11 10 9 13 13 C 1.41160 * 120.16572 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00116 * 160.23239 * 13 12 11 15 15 C 1.39894 * 119.99660 * 340.23992 * 13 12 11 16 16 N 1.30877 * 120.00216 * 328.61109 * 15 13 12 17 17 Si 1.86806 * 119.99837 * 148.61627 * 15 13 12 18 18 H 1.48499 * 109.47125 * 84.99431 * 17 15 13 19 19 H 1.48503 * 109.46827 * 204.99205 * 17 15 13 20 20 H 1.48495 * 109.47171 * 324.99275 * 17 15 13 21 21 C 1.40867 * 119.67393 * 0.02562 * 12 11 10 22 22 C 1.36378 * 119.82791 * 359.97438 * 21 12 11 23 23 C 1.47012 * 108.70342 * 335.54970 * 5 4 2 24 24 C 1.54329 * 107.27202 * 1.29000 * 23 5 4 25 25 H 1.08996 * 110.71935 * 263.82904 * 24 23 5 26 26 C 1.50699 * 110.72061 * 140.73190 * 24 23 5 27 27 O 1.20821 * 120.00041 * 335.39180 * 26 24 23 28 28 O 1.34230 * 119.99749 * 155.39210 * 26 24 23 29 29 H 1.08998 * 109.46863 * 301.79874 * 1 2 3 30 30 H 1.08994 * 109.46965 * 61.79788 * 1 2 3 31 31 H 1.09000 * 109.46889 * 181.79408 * 1 2 3 32 32 H 1.08998 * 110.49778 * 160.34890 * 4 2 1 33 33 H 1.09001 * 110.34156 * 37.95672 * 4 2 1 34 34 H 0.96999 * 119.99916 * 6.32371 * 8 6 5 35 35 H 1.08001 * 119.91498 * 359.69788 * 10 9 8 36 36 H 1.08003 * 120.08095 * 179.97438 * 11 10 9 37 37 H 0.96994 * 120.00328 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.08637 * 179.97438 * 21 12 11 39 39 H 1.08003 * 119.91592 * 180.02562 * 22 21 12 40 40 H 1.09001 * 109.88345 * 120.70304 * 23 5 4 41 41 H 1.09000 * 109.88412 * 241.71815 * 23 5 4 42 42 H 0.96697 * 116.99843 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0908 -0.8074 -1.2000 5 7 2.0139 -2.2162 -0.7724 6 6 1.9471 -3.2836 -1.5927 7 8 1.9420 -3.1245 -2.7981 8 7 1.8860 -4.5272 -1.0768 9 6 1.9500 -5.6342 -1.9189 10 6 1.1847 -6.7657 -1.6370 11 6 1.2417 -7.8535 -2.4575 12 6 2.0757 -7.8322 -3.5924 13 6 2.1398 -8.9541 -4.4467 14 1 2.5063 -8.8435 -5.4566 15 6 1.7284 -10.2090 -3.9853 16 7 1.8697 -10.5204 -2.7220 17 14 0.9773 -11.4404 -5.1724 18 1 2.0596 -12.2012 -5.8469 19 1 0.1040 -12.3800 -4.4241 20 1 0.1712 -10.7190 -6.1897 21 6 2.8457 -6.6858 -3.8706 22 6 2.7782 -5.6056 -3.0408 23 6 2.0285 -2.2644 0.6969 24 6 2.0861 -0.8074 1.2026 25 1 3.1132 -0.5154 1.4212 26 6 1.2132 -0.6300 2.4181 27 8 0.2801 -1.3743 2.6056 28 8 1.4724 0.3549 3.2925 29 1 -0.3633 0.5415 0.8734 30 1 -0.3633 0.4856 -0.9056 31 1 -0.3633 -1.0272 0.0322 32 1 3.1253 -0.5271 -1.3985 33 1 1.4765 -0.6457 -2.0858 34 1 1.7976 -4.6510 -0.1188 35 1 0.5487 -6.7820 -0.7642 36 1 0.6488 -8.7291 -2.2376 37 1 1.5848 -11.3906 -2.4021 38 1 3.4877 -6.6625 -4.7386 39 1 3.3676 -4.7258 -3.2530 40 1 1.1218 -2.7475 1.0610 41 1 2.9049 -2.8136 1.0411 42 1 0.8851 0.4289 4.0571 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111262047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:41 Heat of formation + Delta-G solvation = -93.521158 kcal Electronic energy + Delta-G solvation = -26130.062134 eV Core-core repulsion = 22267.828027 eV Total energy + Delta-G solvation = -3862.234107 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.23897 -39.91390 -38.25750 -36.99747 -36.40552 -34.41632 -33.28430 -32.46448 -30.38750 -29.51857 -28.93363 -26.96541 -25.34680 -24.46588 -22.34292 -21.32427 -20.69276 -20.24734 -19.39083 -18.49628 -18.07056 -17.29798 -17.09156 -16.25895 -16.08345 -15.89379 -15.18742 -14.81065 -14.32087 -13.96503 -13.94906 -13.87704 -13.39797 -13.21200 -12.83645 -12.68167 -12.55148 -12.37471 -12.03746 -11.93041 -11.91843 -11.70340 -11.38831 -11.34181 -11.19296 -11.09093 -10.92586 -10.82177 -10.49403 -10.14903 -9.68829 -9.61190 -9.17220 -8.68788 -8.55143 -7.49744 -7.07543 -6.83721 -4.21958 1.76602 2.43189 2.70347 2.94193 3.06479 3.07667 3.15338 3.21538 3.69645 3.92035 3.92318 3.97027 4.44971 4.49938 4.57005 4.71445 4.83817 4.90930 5.09926 5.31930 5.40423 5.51484 5.58389 5.61712 5.67402 5.73529 5.95529 6.08884 6.17571 6.26386 6.44229 6.82878 6.92684 7.04746 7.14395 7.30593 7.36583 7.48466 7.63149 7.89713 7.99320 8.07167 8.30214 8.48119 8.60463 8.89055 8.94637 9.14614 10.06591 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029626 B = 0.002524 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.878528 B =11092.360451 C =11598.527628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.103 0.897 4 C 0.132 3.868 5 N -0.640 5.640 6 C 0.715 3.285 7 O -0.574 6.574 8 N -0.662 5.662 9 C 0.000 4.000 10 C -0.104 4.104 11 C -0.170 4.170 12 C 0.110 3.890 13 C -0.464 4.464 14 H 0.081 0.919 15 C 0.087 3.913 16 N -0.772 5.772 17 Si 0.897 3.103 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.258 1.258 21 C -0.222 4.222 22 C -0.066 4.066 23 C 0.110 3.890 24 C -0.093 4.093 25 H 0.120 0.880 26 C 0.492 3.508 27 O -0.504 6.504 28 O -0.515 6.515 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.390 0.610 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.283 0.717 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.291 18.520 11.866 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.121 0.879 4 C 0.008 3.992 5 N -0.381 5.381 6 C 0.418 3.582 7 O -0.450 6.450 8 N -0.308 5.308 9 C -0.093 4.093 10 C -0.125 4.125 11 C -0.189 4.189 12 C 0.107 3.893 13 C -0.492 4.492 14 H 0.099 0.901 15 C -0.135 4.135 16 N -0.395 5.395 17 Si 0.721 3.279 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.182 1.182 21 C -0.243 4.243 22 C -0.087 4.087 23 C -0.014 4.014 24 C -0.113 4.113 25 H 0.138 0.862 26 C 0.334 3.666 27 O -0.392 6.392 28 O -0.327 6.327 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.223 0.777 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -0.297 18.117 10.801 21.094 hybrid contribution -0.749 -0.627 0.798 1.261 sum -1.045 17.490 11.599 21.013 Atomic orbital electron populations 1.21854 0.93347 1.03368 1.02128 1.22449 0.97117 0.99186 0.92131 0.87862 1.22137 1.01090 0.79028 0.96920 1.47470 1.79938 1.05765 1.04900 1.15464 0.78535 0.79694 0.84479 1.90931 1.57750 1.84200 1.12126 1.42097 1.76170 1.03173 1.09327 1.16853 1.07085 0.87416 0.97903 1.20157 0.98569 0.94079 0.99646 1.20661 1.02913 0.97491 0.97868 1.17585 0.88675 0.91905 0.91139 1.19496 1.38111 0.91831 0.99741 0.90103 1.25942 0.92869 0.99307 0.95342 1.69939 1.31505 1.21662 1.16406 0.86513 0.80102 0.79682 0.81630 1.19306 1.20078 1.18220 1.20553 1.05513 0.95816 1.02374 1.20185 0.96804 0.97082 0.94583 1.21862 1.03471 0.94237 0.81866 1.22028 1.00413 0.98056 0.90757 0.86188 1.22934 0.83468 0.77025 0.83198 1.90758 1.29742 1.44034 1.74623 1.84525 1.59283 1.52083 1.36801 0.92775 0.91339 0.91341 0.91113 0.89543 0.77663 0.89339 0.87116 0.90647 0.88783 0.88459 0.89662 0.90651 0.72946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.17 37.16 0.30 -1.02 16 2 C -0.09 -0.68 3.53 -88.35 -0.31 -0.99 16 3 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 4 C 0.13 1.39 6.39 -2.41 -0.02 1.38 16 5 N -0.64 -8.69 3.31 -176.10 -0.58 -9.27 16 6 C 0.72 13.44 8.17 -86.92 -0.71 12.73 16 7 O -0.57 -13.12 14.53 5.29 0.08 -13.05 16 8 N -0.66 -12.58 5.25 -14.10 -0.07 -12.65 16 9 C 0.00 -0.01 6.22 -83.57 -0.52 -0.53 16 10 C -0.10 -2.47 9.90 -39.79 -0.39 -2.86 16 11 C -0.17 -4.44 8.74 -39.26 -0.34 -4.78 16 12 C 0.11 2.99 5.60 -106.80 -0.60 2.39 16 13 C -0.46 -12.44 8.96 -37.85 -0.34 -12.78 16 14 H 0.08 2.10 8.01 -52.49 -0.42 1.68 16 15 C 0.09 2.17 4.83 -17.34 -0.08 2.08 16 16 N -0.77 -19.69 11.55 55.54 0.64 -19.05 16 17 Si 0.90 18.49 29.66 -169.99 -5.04 13.44 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 20 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 21 C -0.22 -5.79 9.74 -39.26 -0.38 -6.17 16 22 C -0.07 -1.65 8.57 -39.79 -0.34 -1.99 16 23 C 0.11 1.14 5.34 -3.07 -0.02 1.12 16 24 C -0.09 -0.71 3.30 -89.94 -0.30 -1.01 16 25 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 26 C 0.49 4.09 6.02 36.01 0.22 4.30 16 27 O -0.50 -5.80 15.84 -18.75 -0.30 -6.10 16 28 O -0.51 -2.96 13.42 -39.26 -0.53 -3.49 16 29 H 0.05 0.44 7.32 -51.93 -0.38 0.06 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.03 7.95 -51.93 -0.41 0.61 16 34 H 0.39 6.18 7.81 -40.82 -0.32 5.86 16 35 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.11 2.93 6.33 -52.48 -0.33 2.60 16 37 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 38 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 39 H 0.10 2.38 6.68 -52.48 -0.35 2.03 16 40 H 0.09 0.99 6.76 -51.93 -0.35 0.64 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.41 0.78 9.10 45.56 0.41 1.20 16 LS Contribution 351.16 15.07 5.29 5.29 Total: -1.00 -33.52 351.16 -8.99 -42.51 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -4.65 Total: 10.47 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -3.83 Total: -8.11 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.02 Total: -40.97 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.75 Total: -22.64 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.04 Total: 13.44 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.52 -8.99 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111262047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.010 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds