Wall clock time and date at job start Tue Mar 31 2020 12:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.88816 * 2 1 4 4 C 1.55128 * 111.19466 * 236.06585 * 2 1 3 5 5 N 1.47430 * 104.72117 * 279.19332 * 4 2 1 6 6 C 1.34781 * 125.64635 * 155.81605 * 5 4 2 7 7 O 1.21582 * 120.00119 * 359.71480 * 6 5 4 8 8 N 1.34775 * 119.99804 * 179.71550 * 6 5 4 9 9 C 1.39239 * 119.99954 * 186.32858 * 8 6 5 10 10 C 1.39484 * 119.83476 * 216.73700 * 9 8 6 11 11 C 1.36372 * 120.16849 * 179.97438 * 10 9 8 12 12 C 1.40860 * 119.83075 * 359.97438 * 11 10 9 13 13 C 1.41160 * 120.16572 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00116 * 160.23239 * 13 12 11 15 15 C 1.39894 * 119.99660 * 340.23992 * 13 12 11 16 16 N 1.30877 * 120.00216 * 328.61109 * 15 13 12 17 17 Si 1.86806 * 119.99837 * 148.61627 * 15 13 12 18 18 H 1.48499 * 109.47125 * 84.99431 * 17 15 13 19 19 H 1.48503 * 109.46827 * 204.99205 * 17 15 13 20 20 H 1.48495 * 109.47171 * 324.99275 * 17 15 13 21 21 C 1.40867 * 119.67393 * 0.02562 * 12 11 10 22 22 C 1.36378 * 119.82791 * 359.97438 * 21 12 11 23 23 C 1.47012 * 108.70342 * 335.54970 * 5 4 2 24 24 C 1.54329 * 107.27202 * 1.29000 * 23 5 4 25 25 H 1.08996 * 110.71935 * 263.82904 * 24 23 5 26 26 C 1.50699 * 110.72061 * 140.73190 * 24 23 5 27 27 O 1.20821 * 120.00041 * 335.39180 * 26 24 23 28 28 O 1.34230 * 119.99749 * 155.39210 * 26 24 23 29 29 H 1.08998 * 109.46863 * 301.79874 * 1 2 3 30 30 H 1.08994 * 109.46965 * 61.79788 * 1 2 3 31 31 H 1.09000 * 109.46889 * 181.79408 * 1 2 3 32 32 H 1.08998 * 110.49778 * 160.34890 * 4 2 1 33 33 H 1.09001 * 110.34156 * 37.95672 * 4 2 1 34 34 H 0.96999 * 119.99916 * 6.32371 * 8 6 5 35 35 H 1.08001 * 119.91498 * 359.69788 * 10 9 8 36 36 H 1.08003 * 120.08095 * 179.97438 * 11 10 9 37 37 H 0.96994 * 120.00328 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.08637 * 179.97438 * 21 12 11 39 39 H 1.08003 * 119.91592 * 180.02562 * 22 21 12 40 40 H 1.09001 * 109.88345 * 120.70304 * 23 5 4 41 41 H 1.09000 * 109.88412 * 241.71815 * 23 5 4 42 42 H 0.96697 * 116.99843 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0908 -0.8074 -1.2000 5 7 2.0139 -2.2162 -0.7724 6 6 1.9471 -3.2836 -1.5927 7 8 1.9420 -3.1245 -2.7981 8 7 1.8860 -4.5272 -1.0768 9 6 1.9500 -5.6342 -1.9189 10 6 1.1847 -6.7657 -1.6370 11 6 1.2417 -7.8535 -2.4575 12 6 2.0757 -7.8322 -3.5924 13 6 2.1398 -8.9541 -4.4467 14 1 2.5063 -8.8435 -5.4566 15 6 1.7284 -10.2090 -3.9853 16 7 1.8697 -10.5204 -2.7220 17 14 0.9773 -11.4404 -5.1724 18 1 2.0596 -12.2012 -5.8469 19 1 0.1040 -12.3800 -4.4241 20 1 0.1712 -10.7190 -6.1897 21 6 2.8457 -6.6858 -3.8706 22 6 2.7782 -5.6056 -3.0408 23 6 2.0285 -2.2644 0.6969 24 6 2.0861 -0.8074 1.2026 25 1 3.1132 -0.5154 1.4212 26 6 1.2132 -0.6300 2.4181 27 8 0.2801 -1.3743 2.6056 28 8 1.4724 0.3549 3.2925 29 1 -0.3633 0.5415 0.8734 30 1 -0.3633 0.4856 -0.9056 31 1 -0.3633 -1.0272 0.0322 32 1 3.1253 -0.5271 -1.3985 33 1 1.4765 -0.6457 -2.0858 34 1 1.7976 -4.6510 -0.1188 35 1 0.5487 -6.7820 -0.7642 36 1 0.6488 -8.7291 -2.2376 37 1 1.5848 -11.3906 -2.4021 38 1 3.4877 -6.6625 -4.7386 39 1 3.3676 -4.7258 -3.2530 40 1 1.1218 -2.7475 1.0610 41 1 2.9049 -2.8136 1.0411 42 1 0.8851 0.4289 4.0571 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111262047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:40 Heat of formation + Delta-G solvation = -115.655700 kcal Electronic energy + Delta-G solvation = -26131.021960 eV Core-core repulsion = 22267.828027 eV Total energy + Delta-G solvation = -3863.193933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.07185 -41.14005 -39.58496 -38.49603 -37.04190 -36.19380 -34.91237 -33.68419 -31.47587 -31.14003 -30.77616 -27.99179 -26.67736 -25.76814 -23.60553 -22.90563 -22.34526 -21.02099 -20.74029 -19.45676 -19.19394 -19.08696 -17.91259 -17.79553 -17.01459 -16.97328 -16.77718 -16.07696 -15.81030 -15.57119 -15.00995 -14.70979 -14.62638 -14.47353 -14.31801 -13.97949 -13.81352 -13.68360 -13.46772 -13.30578 -13.22389 -12.81871 -12.68318 -12.53217 -12.39488 -12.32196 -12.02471 -11.93537 -11.86346 -11.57633 -11.50881 -11.30915 -11.02100 -10.52460 -9.72812 -9.47856 -8.96400 -8.70917 -6.21418 0.85883 1.13762 1.14157 1.38052 1.44398 1.52727 1.58971 2.05744 2.16183 2.20873 2.67547 3.05663 3.23778 3.33683 3.72784 3.85908 4.00667 4.14532 4.35323 4.37343 4.46047 4.48243 4.54112 4.62412 4.78592 4.83756 4.84556 4.90463 4.96269 5.05491 5.14606 5.19413 5.27884 5.35359 5.44959 5.62143 5.62825 5.78236 6.03895 6.11886 6.14980 6.35889 6.62723 6.90189 6.96796 7.00400 7.00584 7.60996 8.21686 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029626 B = 0.002524 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.878528 B =11092.360451 C =11598.527628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.075 4.075 3 H 0.143 0.857 4 C 0.122 3.878 5 N -0.632 5.632 6 C 0.712 3.288 7 O -0.621 6.621 8 N -0.658 5.658 9 C 0.012 3.988 10 C -0.104 4.104 11 C -0.188 4.188 12 C 0.081 3.919 13 C -0.502 4.502 14 H 0.076 0.924 15 C 0.050 3.950 16 N -0.799 5.799 17 Si 0.974 3.026 18 H -0.258 1.258 19 H -0.262 1.262 20 H -0.263 1.263 21 C -0.242 4.242 22 C -0.074 4.074 23 C 0.102 3.898 24 C -0.085 4.085 25 H 0.154 0.846 26 C 0.500 3.500 27 O -0.543 6.543 28 O -0.505 6.505 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.407 0.593 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.294 0.706 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.178 20.044 13.528 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 H 0.160 0.840 4 C 0.000 4.000 5 N -0.371 5.371 6 C 0.415 3.585 7 O -0.501 6.501 8 N -0.306 5.306 9 C -0.082 4.082 10 C -0.125 4.125 11 C -0.207 4.207 12 C 0.078 3.922 13 C -0.529 4.529 14 H 0.094 0.906 15 C -0.170 4.170 16 N -0.423 5.423 17 Si 0.794 3.206 18 H -0.182 1.182 19 H -0.186 1.186 20 H -0.187 1.187 21 C -0.262 4.262 22 C -0.094 4.094 23 C -0.020 4.020 24 C -0.105 4.105 25 H 0.172 0.828 26 C 0.343 3.657 27 O -0.433 6.433 28 O -0.318 6.318 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.243 0.757 35 H 0.135 0.865 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -0.169 19.713 12.555 23.373 hybrid contribution -0.769 -0.920 0.426 1.272 sum -0.938 18.794 12.981 22.860 Atomic orbital electron populations 1.21835 0.94509 1.01471 1.02812 1.22450 0.95995 1.00557 0.90405 0.83951 1.22446 1.02215 0.77553 0.97769 1.47421 1.77861 1.05680 1.06151 1.15599 0.78205 0.80373 0.84370 1.90897 1.59738 1.85038 1.14420 1.41907 1.76414 1.02538 1.09709 1.16893 1.05401 0.88400 0.97487 1.20394 0.98560 0.93437 1.00071 1.20679 1.03382 0.98153 0.98533 1.17901 0.89537 0.92648 0.92082 1.19712 1.40431 0.93051 0.99734 0.90598 1.26751 0.92415 1.00637 0.97161 1.69936 1.31528 1.22810 1.17982 0.85362 0.79267 0.77036 0.78980 1.18211 1.18566 1.18687 1.20693 1.06077 0.96347 1.03073 1.20271 0.97343 0.96628 0.95191 1.22052 1.03572 0.96828 0.79584 1.22039 1.02187 0.95783 0.90450 0.82834 1.22926 0.82615 0.76754 0.83384 1.90764 1.31365 1.45579 1.75576 1.84477 1.59530 1.50682 1.37152 0.91857 0.90889 0.94534 0.89179 0.91304 0.75698 0.86490 0.87967 0.89506 0.88731 0.88466 0.90997 0.89082 0.70842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.17 71.98 0.59 -1.78 16 2 C -0.08 -0.90 3.53 -9.33 -0.03 -0.93 16 3 H 0.14 0.74 8.14 -2.38 -0.02 0.72 16 4 C 0.12 2.36 6.39 86.93 0.56 2.91 16 5 N -0.63 -16.43 3.31 -829.32 -2.75 -19.17 16 6 C 0.71 26.67 8.17 179.05 1.46 28.13 16 7 O -0.62 -28.92 14.53 -3.97 -0.06 -28.98 16 8 N -0.66 -24.78 5.25 -316.78 -1.66 -26.44 16 9 C 0.01 0.55 6.22 38.57 0.24 0.79 16 10 C -0.10 -4.97 9.90 22.13 0.22 -4.75 16 11 C -0.19 -10.08 8.74 22.48 0.20 -9.89 16 12 C 0.08 4.59 5.60 -21.28 -0.12 4.47 16 13 C -0.50 -27.87 8.96 23.39 0.21 -27.66 16 14 H 0.08 4.12 8.01 -2.91 -0.02 4.10 16 15 C 0.05 2.51 4.83 85.24 0.41 2.92 16 16 N -0.80 -41.22 11.55 21.82 0.25 -40.97 16 17 Si 0.97 38.07 29.66 68.60 2.03 40.11 16 18 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 19 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 20 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 21 C -0.24 -13.13 9.74 22.48 0.22 -12.91 16 22 C -0.07 -3.78 8.57 22.14 0.19 -3.59 16 23 C 0.10 1.92 5.34 86.73 0.46 2.38 16 24 C -0.09 -1.01 3.30 -10.35 -0.03 -1.04 16 25 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 26 C 0.50 6.85 6.02 71.24 0.43 7.28 16 27 O -0.54 -11.66 15.84 21.98 0.35 -11.31 16 28 O -0.50 -3.91 13.42 -51.41 -0.69 -4.60 16 29 H 0.06 0.89 7.32 -2.39 -0.02 0.87 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 0.82 7.75 -2.39 -0.02 0.80 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.59 7.95 -2.39 -0.02 1.58 16 34 H 0.41 12.47 7.81 -92.71 -0.72 11.75 16 35 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 36 H 0.10 5.57 6.33 -2.91 -0.02 5.55 16 37 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 38 H 0.09 4.93 8.06 -2.91 -0.02 4.90 16 39 H 0.10 4.90 6.68 -2.91 -0.02 4.88 16 40 H 0.07 1.59 6.76 -2.39 -0.02 1.58 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.43 0.20 9.10 -74.06 -0.67 -0.47 16 Total: -1.00 -76.08 351.16 2.15 -73.93 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -0.32 Total: 31.10 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 5.00 Total: -13.66 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -4.16 Total: -86.58 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.40 Total: -44.89 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.11 kcal Total: -76.08 2.15 -73.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111262047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.730 kcal (2) G-P(sol) polarization free energy of solvation -76.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds