Wall clock time and date at job start Tue Mar 31 2020 12:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.30201 * 2 1 4 4 C 1.54385 * 110.43604 * 122.23211 * 2 1 3 5 5 N 1.48148 * 104.61632 * 95.04914 * 4 2 1 6 6 C 1.34773 * 127.84122 * 219.61070 * 5 4 2 7 7 O 1.21582 * 119.99969 * 359.94503 * 6 5 4 8 8 N 1.34776 * 119.99956 * 179.97438 * 6 5 4 9 9 C 1.39248 * 119.99636 * 176.69681 * 8 6 5 10 10 C 1.39485 * 119.82936 * 217.51249 * 9 8 6 11 11 C 1.36376 * 120.16736 * 179.76141 * 10 9 8 12 12 C 1.40869 * 119.82481 * 0.51155 * 11 10 9 13 13 C 1.41160 * 120.16288 * 179.72000 * 12 11 10 14 14 H 1.07995 * 120.00014 * 157.95255 * 13 12 11 15 15 C 1.39897 * 119.99929 * 337.95075 * 13 12 11 16 16 N 1.30885 * 119.99839 * 327.61546 * 15 13 12 17 17 Si 1.86792 * 119.99789 * 147.61951 * 15 13 12 18 18 H 1.48497 * 109.47267 * 94.99047 * 17 15 13 19 19 H 1.48505 * 109.46782 * 214.98317 * 17 15 13 20 20 H 1.48491 * 109.47468 * 334.98543 * 17 15 13 21 21 C 1.40873 * 119.67612 * 359.74396 * 12 11 10 22 22 C 1.36370 * 119.82609 * 359.97438 * 21 12 11 23 23 C 1.48152 * 104.32253 * 39.58882 * 5 4 2 24 24 C 1.54285 * 110.34192 * 237.82726 * 2 1 3 25 25 H 1.09002 * 110.34424 * 359.89169 * 24 2 1 26 26 C 1.50701 * 110.34174 * 122.15284 * 24 2 1 27 27 O 1.20830 * 120.00282 * 359.97438 * 26 24 2 28 28 O 1.34227 * 119.99952 * 180.02562 * 26 24 2 29 29 H 1.09003 * 109.46622 * 180.70460 * 1 2 3 30 30 H 1.09005 * 109.47175 * 300.69807 * 1 2 3 31 31 H 1.08999 * 109.47273 * 60.70368 * 1 2 3 32 32 H 1.08997 * 110.40769 * 213.83504 * 4 2 1 33 33 H 1.09004 * 110.40873 * 336.27037 * 4 2 1 34 34 H 0.96998 * 120.00593 * 356.69698 * 8 6 5 35 35 H 1.07999 * 119.91550 * 0.02562 * 10 9 8 36 36 H 1.07996 * 120.08684 * 180.25738 * 11 10 9 37 37 H 0.97000 * 119.99742 * 179.97438 * 16 15 13 38 38 H 1.08001 * 120.08730 * 179.97438 * 21 12 11 39 39 H 1.08002 * 119.91975 * 179.97438 * 22 21 12 40 40 H 1.09001 * 110.40460 * 201.62995 * 23 5 4 41 41 H 1.08999 * 110.50701 * 79.24802 * 23 5 4 42 42 H 0.96700 * 117.00152 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0691 -0.7716 1.2237 5 7 2.3179 -2.1428 0.7212 6 6 2.0832 -3.3101 1.3527 7 8 1.6121 -3.3109 2.4735 8 7 2.3715 -4.4765 0.7421 9 6 2.1937 -5.6798 1.4200 10 6 3.1045 -6.7203 1.2370 11 6 2.9397 -7.8999 1.9012 12 6 1.8404 -8.0698 2.7655 13 6 1.6597 -9.2899 3.4519 14 1 1.0641 -9.3198 4.3523 15 6 2.2521 -10.4603 2.9659 16 7 2.4090 -10.6280 1.6774 17 14 2.8191 -11.7838 4.1559 18 1 1.7528 -12.8067 4.3034 19 1 4.0515 -12.4256 3.6318 20 1 3.1039 -11.1714 5.4783 21 6 0.9218 -7.0162 2.9409 22 6 1.1030 -5.8403 2.2744 23 6 2.8826 -1.9399 -0.6334 24 6 2.0664 -0.7703 -1.2245 25 1 1.2398 -1.1503 -1.8250 26 6 2.9536 0.1200 -2.0560 27 8 3.1493 1.2634 -1.7180 28 8 3.5255 -0.3570 -3.1727 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3634 0.5247 0.8837 31 1 -0.3634 0.5029 -0.8962 32 1 2.9969 -0.3224 1.5778 33 1 1.3254 -0.7880 2.0205 34 1 2.7027 -4.4778 -0.1696 35 1 3.9446 -6.5899 0.5710 36 1 3.6480 -8.7032 1.7618 37 1 2.8201 -11.4394 1.3404 38 1 0.0764 -7.1393 3.6016 39 1 0.3995 -5.0317 2.4074 40 1 2.7526 -2.8377 -1.2377 41 1 3.9378 -1.6740 -0.5713 42 1 4.0860 0.2516 -3.6733 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111262049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:46 Heat of formation + Delta-G solvation = -91.586675 kcal Electronic energy + Delta-G solvation = -26014.638093 eV Core-core repulsion = 22152.487871 eV Total energy + Delta-G solvation = -3862.150222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.14782 -39.91524 -38.24786 -37.00832 -36.44300 -34.43769 -33.28875 -32.46576 -30.60368 -29.54317 -28.97630 -26.72761 -25.20791 -24.37920 -22.56102 -21.48419 -20.77739 -19.87701 -19.49404 -18.48933 -18.09346 -17.34303 -17.31693 -16.45495 -16.08827 -15.42210 -15.19848 -14.87255 -14.28788 -13.98146 -13.94130 -13.81745 -13.65776 -13.06980 -13.04787 -12.66610 -12.55074 -12.16014 -12.04090 -11.98394 -11.94188 -11.46288 -11.42527 -11.29395 -11.13922 -11.06786 -10.93605 -10.88297 -10.51229 -10.18601 -9.72896 -9.61026 -9.12681 -8.77101 -8.64583 -7.52156 -7.11357 -6.85648 -4.24509 1.75283 2.47112 2.68007 2.86080 3.04772 3.06844 3.13214 3.19699 3.63586 3.91007 3.93460 4.15823 4.39784 4.51116 4.54681 4.82516 4.86445 4.98070 5.15789 5.29456 5.42026 5.50673 5.60597 5.68943 5.71580 5.76121 5.94336 6.07497 6.17451 6.22028 6.44419 6.79185 6.91887 7.02623 7.12334 7.27790 7.33456 7.46639 7.61679 7.87425 7.95475 8.05279 8.28784 8.44318 8.58096 8.86691 8.92026 9.11197 10.04406 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029571 B = 0.002503 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.647661 B =11186.066400 C =11790.076096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.109 0.891 4 C 0.128 3.872 5 N -0.644 5.644 6 C 0.720 3.280 7 O -0.572 6.572 8 N -0.662 5.662 9 C -0.004 4.004 10 C -0.103 4.103 11 C -0.170 4.170 12 C 0.112 3.888 13 C -0.466 4.466 14 H 0.081 0.919 15 C 0.088 3.912 16 N -0.771 5.771 17 Si 0.895 3.105 18 H -0.270 1.270 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.223 4.223 22 C -0.065 4.065 23 C 0.118 3.882 24 C -0.096 4.096 25 H 0.122 0.878 26 C 0.490 3.510 27 O -0.510 6.510 28 O -0.512 6.512 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.389 0.611 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.283 0.717 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.890 16.760 -10.158 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.127 0.873 4 C 0.004 3.996 5 N -0.385 5.385 6 C 0.423 3.577 7 O -0.448 6.448 8 N -0.308 5.308 9 C -0.096 4.096 10 C -0.123 4.123 11 C -0.190 4.190 12 C 0.109 3.891 13 C -0.494 4.494 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.394 5.394 17 Si 0.719 3.281 18 H -0.195 1.195 19 H -0.199 1.199 20 H -0.181 1.181 21 C -0.243 4.243 22 C -0.085 4.085 23 C -0.006 4.006 24 C -0.116 4.116 25 H 0.139 0.861 26 C 0.332 3.668 27 O -0.398 6.398 28 O -0.324 6.324 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.223 0.777 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 1.395 16.511 -9.119 18.913 hybrid contribution 0.937 -0.239 -0.605 1.141 sum 2.332 16.272 -9.725 19.100 Atomic orbital electron populations 1.21844 0.93297 1.02629 1.02243 1.22278 0.97159 1.00637 0.92044 0.87300 1.22235 1.01072 0.79944 0.96344 1.48054 1.68535 1.05026 1.16862 1.15419 0.79578 0.79000 0.83697 1.90927 1.50541 1.85138 1.18220 1.42063 1.69116 1.03588 1.16007 1.16856 1.00472 0.85196 1.07110 1.20141 0.96762 0.94311 1.01107 1.20600 0.99781 0.96108 1.02536 1.17590 0.89587 0.92275 0.89624 1.19493 1.28362 0.91884 1.09679 0.90051 1.25928 0.92972 0.99473 0.94937 1.69955 1.29224 1.26253 1.13931 0.86523 0.79068 0.80201 0.82355 1.19498 1.19930 1.18116 1.20598 1.01307 0.95237 1.07136 1.20318 0.95167 0.96413 0.96646 1.22069 0.96912 0.97091 0.84557 1.22097 0.97809 0.95586 0.96090 0.86054 1.23168 0.77875 0.86804 0.78943 1.90712 1.59264 1.19854 1.69944 1.84552 1.61481 1.49125 1.37251 0.91995 0.91634 0.92422 0.91227 0.89051 0.77726 0.89370 0.87493 0.90666 0.88766 0.87902 0.89296 0.90774 0.72932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.91 37.16 0.33 -0.85 16 2 C -0.10 -0.90 3.24 -89.22 -0.29 -1.19 16 3 H 0.11 0.98 6.47 -51.93 -0.34 0.65 16 4 C 0.13 1.42 6.60 -2.41 -0.02 1.41 16 5 N -0.64 -8.50 3.32 -175.01 -0.58 -9.08 16 6 C 0.72 13.08 8.38 -86.92 -0.73 12.35 16 7 O -0.57 -12.82 14.22 5.29 0.08 -12.74 16 8 N -0.66 -11.96 5.27 -14.10 -0.07 -12.04 16 9 C 0.00 -0.09 6.25 -83.56 -0.52 -0.62 16 10 C -0.10 -2.36 9.90 -39.79 -0.39 -2.75 16 11 C -0.17 -4.36 8.74 -39.26 -0.34 -4.70 16 12 C 0.11 3.01 5.57 -106.80 -0.60 2.41 16 13 C -0.47 -12.37 8.94 -37.85 -0.34 -12.71 16 14 H 0.08 2.10 8.01 -52.49 -0.42 1.67 16 15 C 0.09 2.19 4.77 -17.33 -0.08 2.10 16 16 N -0.77 -19.43 11.78 55.55 0.65 -18.78 16 17 Si 0.90 18.26 29.66 -169.99 -5.04 13.21 16 18 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 21 C -0.22 -5.72 9.74 -39.26 -0.38 -6.10 16 22 C -0.07 -1.59 8.59 -39.79 -0.34 -1.94 16 23 C 0.12 1.10 6.47 -2.40 -0.02 1.09 16 24 C -0.10 -0.77 3.21 -90.37 -0.29 -1.06 16 25 H 0.12 0.84 7.71 -51.93 -0.40 0.44 16 26 C 0.49 4.02 7.49 36.01 0.27 4.29 16 27 O -0.51 -5.55 16.01 -18.75 -0.30 -5.85 16 28 O -0.51 -3.06 13.42 -39.25 -0.53 -3.59 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.13 7.60 -51.93 -0.39 0.73 16 34 H 0.39 5.64 7.21 -40.82 -0.29 5.34 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.11 2.77 6.53 -52.49 -0.34 2.43 16 37 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 38 H 0.09 2.31 8.06 -52.49 -0.42 1.88 16 39 H 0.10 2.49 6.45 -52.49 -0.34 2.16 16 40 H 0.09 0.73 6.83 -51.93 -0.35 0.37 16 41 H 0.07 0.64 7.85 -51.93 -0.41 0.24 16 42 H 0.41 0.80 9.10 45.56 0.41 1.22 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -32.89 352.56 -8.76 -41.65 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -4.55 Total: 10.16 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -3.74 Total: -8.26 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.00 Total: -39.89 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.75 Total: -22.18 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.04 Total: 13.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.89 -8.76 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111262049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.934 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds