Wall clock time and date at job start Tue Mar 31 2020 12:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 110.30201 * 2 1 4 4 C 1.54385 * 110.43604 * 122.23211 * 2 1 3 5 5 N 1.48148 * 104.61632 * 95.04914 * 4 2 1 6 6 C 1.34773 * 127.84122 * 219.61070 * 5 4 2 7 7 O 1.21582 * 119.99969 * 359.94503 * 6 5 4 8 8 N 1.34776 * 119.99956 * 179.97438 * 6 5 4 9 9 C 1.39248 * 119.99636 * 176.69681 * 8 6 5 10 10 C 1.39485 * 119.82936 * 217.51249 * 9 8 6 11 11 C 1.36376 * 120.16736 * 179.76141 * 10 9 8 12 12 C 1.40869 * 119.82481 * 0.51155 * 11 10 9 13 13 C 1.41160 * 120.16288 * 179.72000 * 12 11 10 14 14 H 1.07995 * 120.00014 * 157.95255 * 13 12 11 15 15 C 1.39897 * 119.99929 * 337.95075 * 13 12 11 16 16 N 1.30885 * 119.99839 * 327.61546 * 15 13 12 17 17 Si 1.86792 * 119.99789 * 147.61951 * 15 13 12 18 18 H 1.48497 * 109.47267 * 94.99047 * 17 15 13 19 19 H 1.48505 * 109.46782 * 214.98317 * 17 15 13 20 20 H 1.48491 * 109.47468 * 334.98543 * 17 15 13 21 21 C 1.40873 * 119.67612 * 359.74396 * 12 11 10 22 22 C 1.36370 * 119.82609 * 359.97438 * 21 12 11 23 23 C 1.48152 * 104.32253 * 39.58882 * 5 4 2 24 24 C 1.54285 * 110.34192 * 237.82726 * 2 1 3 25 25 H 1.09002 * 110.34424 * 359.89169 * 24 2 1 26 26 C 1.50701 * 110.34174 * 122.15284 * 24 2 1 27 27 O 1.20830 * 120.00282 * 359.97438 * 26 24 2 28 28 O 1.34227 * 119.99952 * 180.02562 * 26 24 2 29 29 H 1.09003 * 109.46622 * 180.70460 * 1 2 3 30 30 H 1.09005 * 109.47175 * 300.69807 * 1 2 3 31 31 H 1.08999 * 109.47273 * 60.70368 * 1 2 3 32 32 H 1.08997 * 110.40769 * 213.83504 * 4 2 1 33 33 H 1.09004 * 110.40873 * 336.27037 * 4 2 1 34 34 H 0.96998 * 120.00593 * 356.69698 * 8 6 5 35 35 H 1.07999 * 119.91550 * 0.02562 * 10 9 8 36 36 H 1.07996 * 120.08684 * 180.25738 * 11 10 9 37 37 H 0.97000 * 119.99742 * 179.97438 * 16 15 13 38 38 H 1.08001 * 120.08730 * 179.97438 * 21 12 11 39 39 H 1.08002 * 119.91975 * 179.97438 * 22 21 12 40 40 H 1.09001 * 110.40460 * 201.62995 * 23 5 4 41 41 H 1.08999 * 110.50701 * 79.24802 * 23 5 4 42 42 H 0.96700 * 117.00152 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0691 -0.7716 1.2237 5 7 2.3179 -2.1428 0.7212 6 6 2.0832 -3.3101 1.3527 7 8 1.6121 -3.3109 2.4735 8 7 2.3715 -4.4765 0.7421 9 6 2.1937 -5.6798 1.4200 10 6 3.1045 -6.7203 1.2370 11 6 2.9397 -7.8999 1.9012 12 6 1.8404 -8.0698 2.7655 13 6 1.6597 -9.2899 3.4519 14 1 1.0641 -9.3198 4.3523 15 6 2.2521 -10.4603 2.9659 16 7 2.4090 -10.6280 1.6774 17 14 2.8191 -11.7838 4.1559 18 1 1.7528 -12.8067 4.3034 19 1 4.0515 -12.4256 3.6318 20 1 3.1039 -11.1714 5.4783 21 6 0.9218 -7.0162 2.9409 22 6 1.1030 -5.8403 2.2744 23 6 2.8826 -1.9399 -0.6334 24 6 2.0664 -0.7703 -1.2245 25 1 1.2398 -1.1503 -1.8250 26 6 2.9536 0.1200 -2.0560 27 8 3.1493 1.2634 -1.7180 28 8 3.5255 -0.3570 -3.1727 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3634 0.5247 0.8837 31 1 -0.3634 0.5029 -0.8962 32 1 2.9969 -0.3224 1.5778 33 1 1.3254 -0.7880 2.0205 34 1 2.7027 -4.4778 -0.1696 35 1 3.9446 -6.5899 0.5710 36 1 3.6480 -8.7032 1.7618 37 1 2.8201 -11.4394 1.3404 38 1 0.0764 -7.1393 3.6016 39 1 0.3995 -5.0317 2.4074 40 1 2.7526 -2.8377 -1.2377 41 1 3.9378 -1.6740 -0.5713 42 1 4.0860 0.2516 -3.6733 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111262049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:45 Heat of formation + Delta-G solvation = -112.671375 kcal Electronic energy + Delta-G solvation = -26015.552394 eV Core-core repulsion = 22152.487871 eV Total energy + Delta-G solvation = -3863.064523 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.97517 -41.12186 -39.55336 -38.47629 -37.08400 -36.16914 -34.89511 -33.64016 -31.46032 -31.35502 -30.77883 -27.84696 -26.48984 -25.63088 -23.55687 -23.05126 -22.49303 -20.97039 -20.61704 -19.43317 -19.16429 -19.08682 -18.11718 -17.87055 -17.04771 -16.91933 -16.59330 -16.09848 -15.74995 -15.40937 -15.00041 -14.70691 -14.66111 -14.48275 -14.36362 -13.94925 -13.86342 -13.80129 -13.39613 -13.20048 -12.99822 -12.81504 -12.65433 -12.55009 -12.31550 -12.17017 -12.03655 -11.92750 -11.79518 -11.61986 -11.56837 -11.24475 -10.92756 -10.50698 -9.85558 -9.45234 -8.96263 -8.69096 -6.20439 0.87339 1.11898 1.16448 1.39154 1.44679 1.52939 1.58966 2.04273 2.17599 2.22150 2.67754 3.02105 3.29839 3.43076 3.73470 3.84545 4.07970 4.13518 4.39244 4.40532 4.46409 4.51550 4.56619 4.65578 4.73716 4.77968 4.91215 4.96683 4.99258 5.12268 5.17492 5.21378 5.30596 5.38456 5.46725 5.61526 5.64769 5.80564 6.05494 6.13580 6.17736 6.38815 6.64530 6.91767 6.98358 7.00925 7.02594 7.63326 8.22818 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029571 B = 0.002503 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.647661 B =11186.066400 C =11790.076096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 H 0.112 0.888 4 C 0.122 3.878 5 N -0.639 5.639 6 C 0.718 3.282 7 O -0.621 6.621 8 N -0.654 5.654 9 C 0.011 3.989 10 C -0.099 4.099 11 C -0.188 4.188 12 C 0.083 3.917 13 C -0.506 4.506 14 H 0.073 0.927 15 C 0.053 3.947 16 N -0.798 5.798 17 Si 0.970 3.030 18 H -0.260 1.260 19 H -0.260 1.260 20 H -0.263 1.263 21 C -0.244 4.244 22 C -0.075 4.075 23 C 0.114 3.886 24 C -0.090 4.090 25 H 0.138 0.862 26 C 0.501 3.499 27 O -0.539 6.539 28 O -0.506 6.506 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.410 0.590 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.294 0.706 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 17.424 -12.064 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.130 0.870 4 C -0.001 4.001 5 N -0.377 5.377 6 C 0.421 3.579 7 O -0.501 6.501 8 N -0.302 5.302 9 C -0.083 4.083 10 C -0.120 4.120 11 C -0.208 4.208 12 C 0.081 3.919 13 C -0.534 4.534 14 H 0.092 0.908 15 C -0.167 4.167 16 N -0.421 5.421 17 Si 0.790 3.210 18 H -0.184 1.184 19 H -0.184 1.184 20 H -0.187 1.187 21 C -0.264 4.264 22 C -0.095 4.095 23 C -0.009 4.009 24 C -0.110 4.110 25 H 0.156 0.844 26 C 0.344 3.656 27 O -0.429 6.429 28 O -0.320 6.320 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.247 0.753 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 2.754 17.229 -11.120 20.690 hybrid contribution 0.528 -0.263 -0.140 0.606 sum 3.282 16.966 -11.261 20.626 Atomic orbital electron populations 1.21824 0.92889 1.01874 1.03167 1.22171 0.97376 1.00325 0.91229 0.87022 1.22424 1.01290 0.79151 0.97205 1.47932 1.67337 1.04136 1.18305 1.15501 0.79097 0.79959 0.83304 1.90897 1.52563 1.86093 1.20566 1.41808 1.69295 1.02342 1.16780 1.16880 0.99044 0.86583 1.05759 1.20401 0.97504 0.93265 1.00783 1.20630 0.99580 0.97083 1.03471 1.17897 0.90466 0.92890 0.90675 1.19686 1.30490 0.93072 1.10119 0.90840 1.26694 0.92245 1.01184 0.96541 1.69945 1.29313 1.27516 1.15369 0.85390 0.79066 0.77146 0.79348 1.18448 1.18445 1.18696 1.20715 1.01596 0.96007 1.08073 1.20403 0.96061 0.95786 0.97288 1.22338 0.97600 0.98478 0.82461 1.22034 0.98176 0.94875 0.95944 0.84395 1.22989 0.77389 0.86097 0.79158 1.90718 1.60300 1.21068 1.70824 1.84505 1.61444 1.49558 1.36500 0.93480 0.91547 0.90793 0.90297 0.90751 0.75299 0.85869 0.88268 0.89502 0.89110 0.88223 0.87617 0.89423 0.70715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.91 71.98 0.64 -1.46 16 2 C -0.09 -1.44 3.24 -9.89 -0.03 -1.47 16 3 H 0.11 1.79 6.47 -2.39 -0.02 1.77 16 4 C 0.12 2.59 6.60 86.53 0.57 3.17 16 5 N -0.64 -15.78 3.32 -825.89 -2.74 -18.52 16 6 C 0.72 25.49 8.38 179.06 1.50 26.99 16 7 O -0.62 -28.22 14.22 -3.97 -0.06 -28.27 16 8 N -0.65 -22.59 5.27 -316.78 -1.67 -24.26 16 9 C 0.01 0.49 6.25 38.56 0.24 0.73 16 10 C -0.10 -4.46 9.90 22.14 0.22 -4.24 16 11 C -0.19 -9.74 8.74 22.48 0.20 -9.54 16 12 C 0.08 4.64 5.57 -21.27 -0.12 4.52 16 13 C -0.51 -27.81 8.94 23.39 0.21 -27.61 16 14 H 0.07 3.98 8.01 -2.91 -0.02 3.96 16 15 C 0.05 2.64 4.77 85.24 0.41 3.05 16 16 N -0.80 -40.47 11.78 21.82 0.26 -40.22 16 17 Si 0.97 37.55 29.66 68.60 2.03 39.58 16 18 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 19 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 21 C -0.24 -13.08 9.74 22.48 0.22 -12.86 16 22 C -0.08 -3.75 8.59 22.13 0.19 -3.56 16 23 C 0.11 1.77 6.47 86.53 0.56 2.33 16 24 C -0.09 -1.18 3.21 -10.63 -0.03 -1.22 16 25 H 0.14 1.42 7.71 -2.39 -0.02 1.40 16 26 C 0.50 6.65 7.49 71.24 0.53 7.18 16 27 O -0.54 -10.39 16.01 21.95 0.35 -10.04 16 28 O -0.51 -4.22 13.42 -51.39 -0.69 -4.91 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 1.85 7.60 -2.38 -0.02 1.83 16 34 H 0.41 10.67 7.21 -92.71 -0.67 10.00 16 35 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 36 H 0.10 5.21 6.53 -2.91 -0.02 5.19 16 37 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 38 H 0.09 4.73 8.06 -2.91 -0.02 4.71 16 39 H 0.10 4.99 6.45 -2.91 -0.02 4.97 16 40 H 0.11 1.32 6.83 -2.39 -0.02 1.30 16 41 H 0.09 1.20 7.85 -2.39 -0.02 1.18 16 42 H 0.43 0.19 9.10 -74.06 -0.67 -0.48 16 Total: -1.00 -73.33 352.56 2.53 -70.81 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -0.26 Total: 29.81 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 5.30 Total: -13.98 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -4.15 Total: -83.00 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -0.39 Total: -43.22 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -73.33 2.53 -70.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111262049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.865 kcal (2) G-P(sol) polarization free energy of solvation -73.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds