Wall clock time and date at job start Tue Mar 31 2020 12:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.79756 * 2 1 4 4 C 1.54601 * 110.57635 * 123.29856 * 2 1 3 5 5 N 1.48109 * 103.42291 * 81.16916 * 4 2 1 6 6 C 1.34773 * 127.03411 * 219.28560 * 5 4 2 7 7 O 1.21581 * 120.00114 * 359.70529 * 6 5 4 8 8 N 1.34779 * 120.00316 * 179.71423 * 6 5 4 9 9 C 1.39241 * 120.00131 * 184.95379 * 8 6 5 10 10 C 1.39482 * 119.83550 * 213.21084 * 9 8 6 11 11 C 1.36373 * 120.16924 * 179.97438 * 10 9 8 12 12 C 1.40867 * 119.82991 * 0.02817 * 11 10 9 13 13 C 1.41154 * 120.16563 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99858 * 333.99661 * 13 12 11 15 15 C 1.39896 * 120.00369 * 153.99357 * 13 12 11 16 16 N 1.30878 * 120.00078 * 163.96532 * 15 13 12 17 17 Si 1.86799 * 119.99581 * 344.24121 * 15 13 12 18 18 H 1.48498 * 109.47087 * 94.51197 * 17 15 13 19 19 H 1.48504 * 109.47233 * 214.51005 * 17 15 13 20 20 H 1.48499 * 109.47429 * 334.51423 * 17 15 13 21 21 C 1.40868 * 119.67225 * 0.27162 * 12 11 10 22 22 C 1.36377 * 119.82837 * 359.42049 * 21 12 11 23 23 C 1.47487 * 105.93299 * 39.02383 * 5 4 2 24 24 C 1.53994 * 107.08390 * 334.77528 * 23 5 4 25 25 H 1.09008 * 110.32771 * 120.19702 * 24 23 5 26 26 C 1.50700 * 110.33170 * 242.30838 * 24 23 5 27 27 O 1.20830 * 119.99245 * 27.03501 * 26 24 23 28 28 O 1.34220 * 120.00301 * 207.02920 * 26 24 23 29 29 H 1.09002 * 109.46776 * 179.36600 * 1 2 3 30 30 H 1.09003 * 109.46955 * 299.35898 * 1 2 3 31 31 H 1.08992 * 109.47532 * 59.36375 * 1 2 3 32 32 H 1.08996 * 110.61371 * 322.65517 * 4 2 1 33 33 H 1.08995 * 110.54070 * 199.64929 * 4 2 1 34 34 H 0.97004 * 119.99944 * 4.94732 * 8 6 5 35 35 H 1.07998 * 119.91207 * 0.02562 * 10 9 8 36 36 H 1.08002 * 120.08221 * 179.97438 * 11 10 9 37 37 H 0.97001 * 119.99984 * 179.97438 * 16 15 13 38 38 H 1.07998 * 120.08663 * 179.70746 * 21 12 11 39 39 H 1.07995 * 119.91750 * 180.32023 * 22 21 12 40 40 H 1.09004 * 109.91076 * 94.14309 * 23 5 4 41 41 H 1.09002 * 109.91230 * 215.41586 * 23 5 4 42 42 H 0.96708 * 116.99935 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0189 0.0000 4 6 2.0734 -0.7946 1.2098 5 7 1.9872 -2.2038 0.7622 6 6 1.6222 -3.2696 1.5021 7 8 1.3243 -3.1243 2.6718 8 7 1.5875 -4.4965 0.9453 9 6 1.1123 -5.5806 1.6785 10 6 1.6579 -6.8482 1.4757 11 6 1.1981 -7.9147 2.1904 12 6 0.1690 -7.7338 3.1352 13 6 -0.3127 -8.8328 3.8786 14 1 -0.2332 -9.8324 3.4776 15 6 -0.8931 -8.6272 5.1348 16 7 -1.6136 -9.5711 5.6851 17 14 -0.6460 -7.0027 6.0231 18 1 -1.7876 -6.0994 5.7297 19 1 -0.5700 -7.2451 7.4863 20 1 0.6160 -6.3719 5.5597 21 6 -0.3814 -6.4517 3.3300 22 6 0.0931 -5.3936 2.6123 23 6 2.3763 -2.2014 -0.6604 24 6 2.0775 -0.7937 -1.2087 25 1 2.9910 -0.3313 -1.5829 26 6 1.0429 -0.8664 -2.3020 27 8 0.2389 -1.7683 -2.3138 28 8 1.0145 0.0707 -3.2626 29 1 -0.3633 -1.0276 -0.0114 30 1 -0.3633 0.5039 0.8957 31 1 -0.3634 0.5236 -0.8841 32 1 1.4490 -0.6311 2.0880 33 1 3.1077 -0.5189 1.4151 34 1 1.8934 -4.6242 0.0337 35 1 2.4471 -6.9852 0.7512 36 1 1.6212 -8.8956 2.0319 37 1 -2.0157 -9.4287 6.5563 38 1 -1.1738 -6.3063 4.0492 39 1 -0.3242 -4.4092 2.7642 40 1 3.4403 -2.4185 -0.7546 41 1 1.7936 -2.9437 -1.2059 42 1 0.3324 -0.0179 -3.9424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111262052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:54 Heat of formation + Delta-G solvation = -86.306224 kcal Electronic energy + Delta-G solvation = -26594.326162 eV Core-core repulsion = 22732.404917 eV Total energy + Delta-G solvation = -3861.921244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31003 -39.96726 -38.38730 -37.17828 -36.38392 -34.46549 -33.30661 -32.61529 -30.51698 -29.87813 -29.46503 -26.95307 -25.29919 -24.40857 -22.38355 -21.78739 -20.88442 -20.20128 -19.43149 -18.49476 -18.29470 -17.34763 -17.08571 -16.65275 -16.13111 -15.98824 -15.39312 -14.74234 -14.28262 -14.01996 -13.90524 -13.73853 -13.62789 -13.31836 -13.11538 -12.67306 -12.47617 -12.42588 -12.40611 -12.20441 -11.90120 -11.83515 -11.69435 -11.42714 -11.23262 -10.85793 -10.77123 -10.71759 -10.53368 -10.18805 -9.69215 -9.63657 -9.05904 -8.97942 -8.72412 -7.71134 -7.10497 -6.90988 -4.37126 1.80123 2.44495 2.54552 2.77782 2.81801 3.19727 3.30352 3.43020 3.56266 3.90701 3.98773 4.07048 4.32255 4.46910 4.58069 4.71663 4.79036 4.88439 5.07302 5.25689 5.37213 5.39088 5.49584 5.52286 5.55741 5.64775 5.92030 5.97076 6.09700 6.12566 6.20428 6.47799 6.72865 6.82386 6.95122 7.05708 7.22178 7.49177 7.51206 7.64920 7.72252 7.92629 8.14307 8.32348 8.38676 8.68058 8.84366 8.98853 10.10811 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024131 B = 0.003081 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.071543 B = 9086.728912 C = 9493.517263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.090 4.090 3 H 0.103 0.897 4 C 0.128 3.872 5 N -0.640 5.640 6 C 0.720 3.280 7 O -0.573 6.573 8 N -0.662 5.662 9 C 0.010 3.990 10 C -0.094 4.094 11 C -0.199 4.199 12 C 0.086 3.914 13 C -0.439 4.439 14 H 0.091 0.909 15 C 0.082 3.918 16 N -0.809 5.809 17 Si 0.915 3.085 18 H -0.272 1.272 19 H -0.295 1.295 20 H -0.240 1.240 21 C -0.231 4.231 22 C -0.060 4.060 23 C 0.109 3.891 24 C -0.093 4.093 25 H 0.119 0.881 26 C 0.488 3.512 27 O -0.502 6.502 28 O -0.517 6.517 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.392 0.608 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.285 0.715 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.990 20.416 -15.132 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.110 4.110 3 H 0.121 0.879 4 C 0.005 3.995 5 N -0.380 5.380 6 C 0.423 3.577 7 O -0.449 6.449 8 N -0.308 5.308 9 C -0.082 4.082 10 C -0.115 4.115 11 C -0.219 4.219 12 C 0.083 3.917 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.137 4.137 16 N -0.433 5.433 17 Si 0.743 3.257 18 H -0.198 1.198 19 H -0.223 1.223 20 H -0.163 1.163 21 C -0.251 4.251 22 C -0.080 4.080 23 C -0.015 4.015 24 C -0.113 4.113 25 H 0.137 0.863 26 C 0.329 3.671 27 O -0.389 6.389 28 O -0.329 6.329 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.226 0.774 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 7.646 20.042 -13.701 25.453 hybrid contribution -0.313 0.535 -0.616 0.873 sum 7.333 20.576 -14.317 26.118 Atomic orbital electron populations 1.21951 0.93603 1.03505 1.02116 1.22264 0.97206 0.99162 0.92360 0.87932 1.22288 1.01236 0.78908 0.97099 1.47763 1.73011 1.07002 1.10225 1.15385 0.78507 0.79735 0.84058 1.90939 1.55572 1.83898 1.14494 1.42061 1.66990 1.05630 1.16122 1.16885 1.02099 0.85487 1.03778 1.20115 0.98964 0.92087 1.00285 1.20516 1.01060 0.97224 1.03060 1.17764 0.89885 0.92137 0.91935 1.19486 1.31060 0.95439 1.00713 0.89146 1.26203 0.91066 0.98543 0.97868 1.69702 1.22435 1.34786 1.16424 0.86287 0.81928 0.81173 0.76351 1.19834 1.22266 1.16306 1.20631 1.04793 0.93889 1.05772 1.20332 0.94059 0.97996 0.95623 1.21965 1.00814 0.95370 0.83329 1.22005 0.97758 0.98985 0.92601 0.86272 1.23065 0.84364 0.78540 0.81131 1.90790 1.39233 1.34571 1.74279 1.84525 1.58043 1.52131 1.38214 0.91179 0.91341 0.92794 0.88898 0.90715 0.77427 0.88647 0.87817 0.90438 0.88198 0.87446 0.90305 0.89389 0.73007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.05 37.16 0.30 -1.15 16 2 C -0.09 -0.67 3.60 -88.93 -0.32 -0.99 16 3 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 4 C 0.13 1.27 6.51 -2.32 -0.02 1.25 16 5 N -0.64 -8.27 3.24 -175.70 -0.57 -8.84 16 6 C 0.72 13.09 8.27 -86.92 -0.72 12.37 16 7 O -0.57 -12.87 14.18 5.29 0.08 -12.79 16 8 N -0.66 -11.92 5.27 -14.10 -0.07 -11.99 16 9 C 0.01 0.22 6.30 -83.57 -0.53 -0.30 16 10 C -0.09 -2.00 9.89 -39.79 -0.39 -2.39 16 11 C -0.20 -4.68 9.74 -39.26 -0.38 -5.07 16 12 C 0.09 2.27 5.22 -106.80 -0.56 1.71 16 13 C -0.44 -12.17 9.59 -37.86 -0.36 -12.53 16 14 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 15 C 0.08 2.23 5.45 -17.34 -0.09 2.14 16 16 N -0.81 -22.16 13.93 55.55 0.77 -21.38 16 17 Si 0.91 22.36 24.36 -169.99 -4.14 18.22 16 18 H -0.27 -6.53 6.67 56.52 0.38 -6.16 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.24 -6.16 6.62 56.52 0.37 -5.79 16 21 C -0.23 -6.02 6.97 -39.26 -0.27 -6.29 16 22 C -0.06 -1.47 8.57 -39.79 -0.34 -1.82 16 23 C 0.11 1.01 6.15 -2.98 -0.02 0.99 16 24 C -0.09 -0.66 3.42 -90.40 -0.31 -0.97 16 25 H 0.12 0.50 8.14 -51.92 -0.42 0.07 16 26 C 0.49 4.16 5.51 36.01 0.20 4.36 16 27 O -0.50 -6.20 15.59 -18.75 -0.29 -6.49 16 28 O -0.52 -3.06 13.42 -39.23 -0.53 -3.59 16 29 H 0.07 0.90 7.49 -51.93 -0.39 0.51 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.46 7.27 -51.93 -0.38 0.08 16 32 H 0.09 1.08 7.75 -51.93 -0.40 0.68 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.39 5.69 7.44 -40.82 -0.30 5.39 16 35 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.29 7.10 8.30 -40.82 -0.34 6.76 16 38 H 0.10 2.62 4.03 -52.49 -0.21 2.41 16 39 H 0.11 2.66 6.36 -52.49 -0.33 2.33 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.93 6.05 -51.93 -0.31 0.61 16 42 H 0.41 0.96 9.10 45.56 0.41 1.37 16 LS Contribution 342.33 15.07 5.16 5.16 Total: -1.00 -34.91 342.33 -7.90 -42.81 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.49 Total: 7.58 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -3.82 Total: -8.68 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.13 Total: -42.21 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.74 Total: -22.87 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.91 -7.90 -42.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111262052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.497 kcal (2) G-P(sol) polarization free energy of solvation -34.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds