Wall clock time and date at job start Tue Mar 31 2020 12:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.79756 * 2 1 4 4 C 1.54601 * 110.57635 * 123.29856 * 2 1 3 5 5 N 1.48109 * 103.42291 * 81.16916 * 4 2 1 6 6 C 1.34773 * 127.03411 * 219.28560 * 5 4 2 7 7 O 1.21581 * 120.00114 * 359.70529 * 6 5 4 8 8 N 1.34779 * 120.00316 * 179.71423 * 6 5 4 9 9 C 1.39241 * 120.00131 * 184.95379 * 8 6 5 10 10 C 1.39482 * 119.83550 * 213.21084 * 9 8 6 11 11 C 1.36373 * 120.16924 * 179.97438 * 10 9 8 12 12 C 1.40867 * 119.82991 * 0.02817 * 11 10 9 13 13 C 1.41154 * 120.16563 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99858 * 333.99661 * 13 12 11 15 15 C 1.39896 * 120.00369 * 153.99357 * 13 12 11 16 16 N 1.30878 * 120.00078 * 163.96532 * 15 13 12 17 17 Si 1.86799 * 119.99581 * 344.24121 * 15 13 12 18 18 H 1.48498 * 109.47087 * 94.51197 * 17 15 13 19 19 H 1.48504 * 109.47233 * 214.51005 * 17 15 13 20 20 H 1.48499 * 109.47429 * 334.51423 * 17 15 13 21 21 C 1.40868 * 119.67225 * 0.27162 * 12 11 10 22 22 C 1.36377 * 119.82837 * 359.42049 * 21 12 11 23 23 C 1.47487 * 105.93299 * 39.02383 * 5 4 2 24 24 C 1.53994 * 107.08390 * 334.77528 * 23 5 4 25 25 H 1.09008 * 110.32771 * 120.19702 * 24 23 5 26 26 C 1.50700 * 110.33170 * 242.30838 * 24 23 5 27 27 O 1.20830 * 119.99245 * 27.03501 * 26 24 23 28 28 O 1.34220 * 120.00301 * 207.02920 * 26 24 23 29 29 H 1.09002 * 109.46776 * 179.36600 * 1 2 3 30 30 H 1.09003 * 109.46955 * 299.35898 * 1 2 3 31 31 H 1.08992 * 109.47532 * 59.36375 * 1 2 3 32 32 H 1.08996 * 110.61371 * 322.65517 * 4 2 1 33 33 H 1.08995 * 110.54070 * 199.64929 * 4 2 1 34 34 H 0.97004 * 119.99944 * 4.94732 * 8 6 5 35 35 H 1.07998 * 119.91207 * 0.02562 * 10 9 8 36 36 H 1.08002 * 120.08221 * 179.97438 * 11 10 9 37 37 H 0.97001 * 119.99984 * 179.97438 * 16 15 13 38 38 H 1.07998 * 120.08663 * 179.70746 * 21 12 11 39 39 H 1.07995 * 119.91750 * 180.32023 * 22 21 12 40 40 H 1.09004 * 109.91076 * 94.14309 * 23 5 4 41 41 H 1.09002 * 109.91230 * 215.41586 * 23 5 4 42 42 H 0.96708 * 116.99935 * 180.02562 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0189 0.0000 4 6 2.0734 -0.7946 1.2098 5 7 1.9872 -2.2038 0.7622 6 6 1.6222 -3.2696 1.5021 7 8 1.3243 -3.1243 2.6718 8 7 1.5875 -4.4965 0.9453 9 6 1.1123 -5.5806 1.6785 10 6 1.6579 -6.8482 1.4757 11 6 1.1981 -7.9147 2.1904 12 6 0.1690 -7.7338 3.1352 13 6 -0.3127 -8.8328 3.8786 14 1 -0.2332 -9.8324 3.4776 15 6 -0.8931 -8.6272 5.1348 16 7 -1.6136 -9.5711 5.6851 17 14 -0.6460 -7.0027 6.0231 18 1 -1.7876 -6.0994 5.7297 19 1 -0.5700 -7.2451 7.4863 20 1 0.6160 -6.3719 5.5597 21 6 -0.3814 -6.4517 3.3300 22 6 0.0931 -5.3936 2.6123 23 6 2.3763 -2.2014 -0.6604 24 6 2.0775 -0.7937 -1.2087 25 1 2.9910 -0.3313 -1.5829 26 6 1.0429 -0.8664 -2.3020 27 8 0.2389 -1.7683 -2.3138 28 8 1.0145 0.0707 -3.2626 29 1 -0.3633 -1.0276 -0.0114 30 1 -0.3633 0.5039 0.8957 31 1 -0.3634 0.5236 -0.8841 32 1 1.4490 -0.6311 2.0880 33 1 3.1077 -0.5189 1.4151 34 1 1.8934 -4.6242 0.0337 35 1 2.4471 -6.9852 0.7512 36 1 1.6212 -8.8956 2.0319 37 1 -2.0157 -9.4287 6.5563 38 1 -1.1738 -6.3063 4.0492 39 1 -0.3242 -4.4092 2.7642 40 1 3.4403 -2.4185 -0.7546 41 1 1.7936 -2.9437 -1.2059 42 1 0.3324 -0.0179 -3.9424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111262052.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:53 Heat of formation + Delta-G solvation = -111.579720 kcal Electronic energy + Delta-G solvation = -26595.422103 eV Core-core repulsion = 22732.404917 eV Total energy + Delta-G solvation = -3863.017185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.12207 -41.19616 -39.71433 -38.55765 -37.03022 -36.21097 -35.01835 -33.78490 -31.77153 -31.27666 -31.21266 -27.99820 -26.49477 -25.72826 -23.69321 -23.37193 -22.40404 -20.97457 -20.69360 -19.70114 -19.24819 -19.10333 -18.23547 -17.77526 -17.20593 -16.96274 -16.76904 -16.23059 -15.79294 -15.55502 -15.27563 -14.78497 -14.62355 -14.54126 -14.36461 -14.18203 -14.07308 -13.89718 -13.72661 -13.28047 -13.15894 -12.75671 -12.70800 -12.52731 -12.41303 -12.36393 -12.13187 -12.06929 -11.90534 -11.66599 -11.43755 -11.29032 -11.00283 -10.78538 -9.79136 -9.61366 -8.94637 -8.92795 -6.42632 0.64393 0.85727 1.17299 1.22238 1.33275 1.44482 1.52624 2.05322 2.08634 2.10766 2.61831 2.98664 3.30988 3.39222 3.51990 3.85221 4.04797 4.18720 4.21112 4.31955 4.37356 4.44099 4.57130 4.59148 4.63117 4.78113 4.82426 4.83126 4.91872 4.93749 4.95739 5.06927 5.16118 5.29626 5.33702 5.50829 5.63734 5.67544 5.86383 5.91248 6.08295 6.20914 6.36872 6.69825 6.82555 6.93367 7.00139 7.56012 8.13623 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024131 B = 0.003081 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.071543 B = 9086.728912 C = 9493.517263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.078 4.078 3 H 0.146 0.854 4 C 0.119 3.881 5 N -0.636 5.636 6 C 0.714 3.286 7 O -0.623 6.623 8 N -0.658 5.658 9 C 0.036 3.964 10 C -0.088 4.088 11 C -0.198 4.198 12 C 0.064 3.936 13 C -0.471 4.471 14 H 0.068 0.932 15 C 0.053 3.947 16 N -0.844 5.844 17 Si 0.962 3.038 18 H -0.272 1.272 19 H -0.275 1.275 20 H -0.262 1.262 21 C -0.243 4.243 22 C -0.082 4.082 23 C 0.101 3.899 24 C -0.086 4.086 25 H 0.165 0.835 26 C 0.492 3.508 27 O -0.549 6.549 28 O -0.507 6.507 29 H 0.028 0.972 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.412 0.588 35 H 0.144 0.856 36 H 0.120 0.880 37 H 0.294 0.706 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.846 23.587 -17.710 31.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.098 4.098 3 H 0.164 0.836 4 C -0.003 4.003 5 N -0.374 5.374 6 C 0.417 3.583 7 O -0.504 6.504 8 N -0.306 5.306 9 C -0.059 4.059 10 C -0.108 4.108 11 C -0.218 4.218 12 C 0.061 3.939 13 C -0.501 4.501 14 H 0.086 0.914 15 C -0.162 4.162 16 N -0.471 5.471 17 Si 0.789 3.211 18 H -0.199 1.199 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.263 4.263 22 C -0.102 4.102 23 C -0.021 4.021 24 C -0.106 4.106 25 H 0.183 0.817 26 C 0.335 3.665 27 O -0.440 6.440 28 O -0.320 6.320 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.249 0.751 35 H 0.162 0.838 36 H 0.138 0.862 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 10.528 23.279 -16.362 30.339 hybrid contribution -1.096 -0.199 -0.108 1.119 sum 9.432 23.080 -16.470 29.882 Atomic orbital electron populations 1.21927 0.95652 1.00900 1.02657 1.22289 0.95338 1.00973 0.91150 0.83634 1.22621 1.02820 0.77389 0.97442 1.47752 1.71108 1.06798 1.11722 1.15573 0.78288 0.80562 0.83872 1.90907 1.57646 1.84807 1.17018 1.41902 1.66940 1.04941 1.16796 1.17073 0.99883 0.87138 1.01763 1.20492 0.99307 0.90657 1.00320 1.20820 0.99981 0.98873 1.02085 1.17919 0.91163 0.91765 0.93064 1.19475 1.33745 0.94935 1.01900 0.91351 1.26648 0.90965 1.00471 0.98134 1.69708 1.23940 1.35986 1.17455 0.85559 0.80516 0.78509 0.76535 1.19856 1.20183 1.18637 1.20658 1.05006 0.94415 1.06239 1.20406 0.95517 0.97245 0.97024 1.22292 1.02465 0.96781 0.80578 1.22104 0.99087 0.97592 0.91806 0.81710 1.23352 0.83745 0.77935 0.81448 1.90792 1.41108 1.36580 1.75475 1.84484 1.58542 1.50884 1.38095 0.95322 0.91285 0.91813 0.91398 0.87535 0.75060 0.83806 0.86196 0.89543 0.89242 0.88292 0.86818 0.90920 0.71170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.05 71.98 0.58 -2.06 16 2 C -0.08 -0.85 3.60 -9.70 -0.03 -0.88 16 3 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 4 C 0.12 2.03 6.51 86.62 0.56 2.59 16 5 N -0.64 -14.98 3.24 -828.07 -2.68 -17.66 16 6 C 0.71 25.26 8.27 179.05 1.48 26.74 16 7 O -0.62 -28.29 14.18 -3.97 -0.06 -28.35 16 8 N -0.66 -22.47 5.27 -316.78 -1.67 -24.14 16 9 C 0.04 1.53 6.30 38.57 0.24 1.77 16 10 C -0.09 -3.50 9.89 22.13 0.22 -3.28 16 11 C -0.20 -9.16 9.74 22.48 0.22 -8.94 16 12 C 0.06 3.44 5.22 -21.28 -0.11 3.33 16 13 C -0.47 -27.28 9.59 23.39 0.22 -27.05 16 14 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 15 C 0.05 2.99 5.45 85.24 0.46 3.45 16 16 N -0.84 -47.93 13.93 21.82 0.30 -47.63 16 17 Si 0.96 47.80 24.36 68.60 1.67 49.47 16 18 H -0.27 -13.31 6.67 99.48 0.66 -12.64 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.26 -13.80 6.62 99.48 0.66 -13.14 16 21 C -0.24 -13.05 6.97 22.48 0.16 -12.89 16 22 C -0.08 -4.07 8.57 22.14 0.19 -3.88 16 23 C 0.10 1.49 6.15 86.53 0.53 2.02 16 24 C -0.09 -0.82 3.42 -10.65 -0.04 -0.85 16 25 H 0.17 0.19 8.14 -2.38 -0.02 0.17 16 26 C 0.49 6.85 5.51 71.24 0.39 7.25 16 27 O -0.55 -12.86 15.59 21.95 0.34 -12.52 16 28 O -0.51 -4.06 13.42 -51.32 -0.69 -4.75 16 29 H 0.03 0.73 7.49 -2.39 -0.02 0.71 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 0.95 7.27 -2.39 -0.02 0.93 16 32 H 0.07 1.52 7.75 -2.39 -0.02 1.50 16 33 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.41 10.75 7.44 -92.71 -0.69 10.06 16 35 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 36 H 0.12 5.11 8.06 -2.91 -0.02 5.08 16 37 H 0.29 15.07 8.30 -92.71 -0.77 14.30 16 38 H 0.09 4.89 4.03 -2.91 -0.01 4.88 16 39 H 0.10 5.08 6.36 -2.91 -0.02 5.06 16 40 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 1.34 6.05 -2.39 -0.01 1.33 16 42 H 0.43 0.68 9.10 -74.05 -0.67 0.00 16 Total: -1.00 -81.69 342.33 1.94 -79.76 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -0.37 Total: 18.53 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 5.08 Total: -12.71 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -4.05 Total: -89.43 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.40 Total: -45.62 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.67 Total: 49.47 kcal Total: -81.69 1.94 -79.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111262052.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.823 kcal (2) G-P(sol) polarization free energy of solvation -81.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds