Wall clock time and date at job start Tue Mar 31 2020 12:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 13 13 C 1.34235 * 116.99354 * 90.00249 * 12 2 1 14 14 O 1.20826 * 120.00385 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99606 * 180.02562 * 13 12 2 16 16 C 1.53005 * 109.46811 * 179.97438 * 15 13 12 17 17 N 1.46503 * 109.46828 * 180.02562 * 16 15 13 18 18 C 1.39277 * 125.82263 * 89.99721 * 17 16 15 19 19 C 1.38667 * 133.33496 * 359.95763 * 18 17 16 20 20 C 1.38105 * 119.85447 * 180.02562 * 19 18 17 21 21 C 1.38441 * 120.28155 * 0.04647 * 20 19 18 22 22 C 1.38112 * 120.28144 * 359.95054 * 21 20 19 23 23 C 1.38665 * 119.85111 * 0.02562 * 22 21 20 24 24 N 1.39281 * 133.33048 * 179.97438 * 23 22 21 25 25 C 1.46489 * 125.82171 * 0.06103 * 24 23 22 26 26 C 1.34639 * 125.81406 * 269.68713 * 17 16 15 27 27 O 1.21685 * 125.16521 * 0.02562 * 26 17 16 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47109 * 299.99718 * 15 13 12 33 33 H 1.08998 * 109.47275 * 60.00156 * 15 13 12 34 34 H 1.09002 * 109.46702 * 299.99447 * 16 15 13 35 35 H 1.08998 * 109.47070 * 60.00035 * 16 15 13 36 36 H 1.08004 * 120.07311 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.85938 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.85902 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.07146 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.47357 * 90.00077 * 25 24 23 41 41 H 1.09000 * 109.47236 * 209.99774 * 25 24 23 42 42 H 1.08998 * 109.47569 * 329.99910 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 8 2.0140 -0.6846 -1.1855 13 6 2.2172 0.0639 -2.2811 14 8 1.9974 1.2516 -2.2507 15 6 2.7183 -0.5774 -3.5495 16 6 2.8624 0.4887 -4.6375 17 7 3.3490 -0.1348 -5.8707 18 6 2.5548 -0.6697 -6.8820 19 6 1.1838 -0.7860 -7.0543 20 6 0.6823 -1.3817 -8.1948 21 6 1.5425 -1.8642 -9.1664 22 6 2.9095 -1.7528 -9.0037 23 6 3.4223 -1.1557 -7.8621 24 7 4.7169 -0.9007 -7.4161 25 6 5.9514 -1.2406 -8.1277 26 6 4.6402 -0.2831 -6.2221 27 8 5.5933 0.0823 -5.5597 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7082 1.1609 3.4844 32 1 3.6872 -1.0410 -3.3640 33 1 2.0088 -1.3370 -3.8775 34 1 1.8933 0.9519 -4.8229 35 1 3.5717 1.2487 -4.3097 36 1 0.5096 -0.4115 -6.2982 37 1 -0.3855 -1.4720 -8.3293 38 1 1.1429 -2.3292 -10.0554 39 1 3.5775 -2.1299 -9.7639 40 1 6.2391 -0.4107 -8.7731 41 1 6.7457 -1.4320 -7.4063 42 1 5.7881 -2.1321 -8.7333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113689804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:29 Heat of formation + Delta-G solvation = -60.319763 kcal Electronic energy + Delta-G solvation = -26048.058989 eV Core-core repulsion = 22187.264602 eV Total energy + Delta-G solvation = -3860.794387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.71168 -39.62467 -38.55687 -36.48883 -36.08207 -35.62009 -33.28730 -32.19405 -30.75981 -29.72468 -29.06785 -27.74998 -25.35570 -24.75352 -22.72773 -22.67137 -21.63333 -20.52336 -19.57496 -18.21344 -17.83702 -17.03030 -16.68739 -16.56842 -16.25431 -15.68491 -15.46979 -14.92029 -14.60959 -14.50882 -14.40726 -14.29907 -13.90456 -13.48387 -13.23990 -12.95291 -12.78927 -12.69495 -12.44636 -12.11083 -11.82583 -11.47952 -11.31723 -11.17953 -11.07894 -10.86178 -10.77709 -10.71320 -10.62370 -10.37859 -10.29384 -9.73069 -9.56911 -8.92026 -8.67719 -8.50763 -8.03032 -6.19592 -4.26381 0.91052 1.07673 1.86624 2.70833 2.90673 2.91791 3.23614 3.30371 3.35522 3.40930 3.69243 4.18904 4.33637 4.40629 4.62063 4.76099 4.78419 4.87265 4.94476 4.98021 5.11378 5.13701 5.18904 5.28650 5.33048 5.45072 5.59067 5.73488 5.81392 5.85850 6.03512 6.17940 6.25090 6.34247 6.52416 6.61181 6.85574 6.88244 7.08428 7.13245 7.58326 7.70397 7.90594 7.99933 8.12065 8.58149 8.85921 9.39185 10.87938 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021456 B = 0.002666 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.687594 B =10501.133915 C =11191.771352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.048 0.952 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.354 6.354 13 C 0.460 3.540 14 O -0.522 6.522 15 C -0.135 4.135 16 C 0.145 3.855 17 N -0.536 5.536 18 C 0.094 3.906 19 C -0.103 4.103 20 C -0.110 4.110 21 C -0.113 4.113 22 C -0.107 4.107 23 C 0.088 3.912 24 N -0.545 5.545 25 C 0.102 3.898 26 C 0.678 3.322 27 O -0.548 6.548 28 H 0.016 0.984 29 H 0.100 0.900 30 H 0.037 0.963 31 H 0.266 0.734 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 -6.076 -26.269 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.559 4.559 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.270 6.270 13 C 0.302 3.698 14 O -0.413 6.413 15 C -0.174 4.174 16 C 0.024 3.976 17 N -0.257 5.257 18 C -0.008 4.008 19 C -0.124 4.124 20 C -0.130 4.130 21 C -0.132 4.132 22 C -0.128 4.128 23 C -0.013 4.013 24 N -0.267 5.267 25 C -0.040 4.040 26 C 0.381 3.619 27 O -0.423 6.423 28 H 0.035 0.965 29 H 0.118 0.882 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.370 -5.306 -25.491 26.145 hybrid contribution 0.241 -0.321 0.896 0.981 sum 2.611 -5.627 -24.596 25.366 Atomic orbital electron populations 1.22162 0.97467 1.00129 1.01453 1.20682 0.91436 0.93980 0.77703 0.93443 1.21076 1.32456 1.13498 0.88883 0.91240 1.24893 0.94917 0.95102 0.99098 1.69905 1.36104 1.22594 1.24104 0.86212 0.78636 0.79514 0.81744 1.19459 1.20717 1.20694 1.86491 1.75576 1.43632 1.21326 1.22916 0.74922 0.85860 0.86054 1.90617 1.49030 1.16765 1.84890 1.21650 1.04705 0.99775 0.91255 1.21371 1.02382 0.94286 0.79600 1.45236 1.05257 1.56231 1.19021 1.18137 0.92955 1.00750 0.88916 1.20189 0.90827 1.01895 0.99464 1.20887 1.00162 0.98760 0.93156 1.20856 0.91915 1.00781 0.99685 1.20029 0.95728 1.01678 0.95373 1.18093 0.83167 1.03298 0.96722 1.45020 1.05751 1.56367 1.19552 1.21719 0.83852 1.01284 0.97112 1.15996 0.83340 0.80979 0.81573 1.91066 1.38061 1.56645 1.56519 0.96497 0.88182 0.94407 0.92430 0.87550 0.87783 0.88065 0.87605 0.84933 0.84918 0.85072 0.85429 0.91367 0.89406 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.33 37.16 0.35 -3.55 16 2 C 0.21 5.80 2.56 -27.88 -0.07 5.72 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.82 8.90 -34.44 -0.31 -15.13 16 5 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.40 11.32 55.43 0.63 -24.78 16 8 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 O -0.35 -8.48 9.86 -39.27 -0.39 -8.87 16 13 C 0.46 9.45 7.93 36.01 0.29 9.73 16 14 O -0.52 -11.92 15.20 -18.75 -0.29 -12.20 16 15 C -0.13 -2.04 6.14 -27.88 -0.17 -2.21 16 16 C 0.14 2.01 5.27 -4.04 -0.02 1.99 16 17 N -0.54 -7.14 2.78 -118.90 -0.33 -7.47 16 18 C 0.09 1.05 6.83 -83.80 -0.57 0.48 16 19 C -0.10 -0.93 10.02 -39.47 -0.40 -1.32 16 20 C -0.11 -0.77 10.03 -39.56 -0.40 -1.16 16 21 C -0.11 -0.71 10.03 -39.55 -0.40 -1.11 16 22 C -0.11 -0.78 10.02 -39.47 -0.40 -1.17 16 23 C 0.09 0.90 6.83 -83.80 -0.57 0.33 16 24 N -0.54 -6.14 3.18 -126.33 -0.40 -6.54 16 25 C 0.10 0.75 11.00 59.84 0.66 1.41 16 26 C 0.68 9.96 8.45 -87.16 -0.74 9.22 16 27 O -0.55 -9.86 17.48 5.20 0.09 -9.76 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.10 2.70 6.07 -51.93 -0.32 2.39 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.11 1.63 7.99 -51.93 -0.41 1.21 16 36 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 37 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.69 8.04 -51.93 -0.42 0.27 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 363.88 15.07 5.48 5.48 Total: -1.00 -34.46 363.88 -8.78 -43.24 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.71 Total: -0.22 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.84 Total: 4.85 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: -0.11 Total: -38.79 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.58 Total: -30.84 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.46 -8.78 -43.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.081 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds