Wall clock time and date at job start Tue Mar 31 2020 12:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 O 1.45206 * 109.47226 * 239.99460 * 2 1 3 13 13 C 1.34235 * 116.99354 * 90.00249 * 12 2 1 14 14 O 1.20826 * 120.00385 * 359.97438 * 13 12 2 15 15 C 1.50704 * 119.99606 * 180.02562 * 13 12 2 16 16 C 1.53005 * 109.46811 * 179.97438 * 15 13 12 17 17 N 1.46503 * 109.46828 * 180.02562 * 16 15 13 18 18 C 1.39277 * 125.82263 * 89.99721 * 17 16 15 19 19 C 1.38667 * 133.33496 * 359.95763 * 18 17 16 20 20 C 1.38105 * 119.85447 * 180.02562 * 19 18 17 21 21 C 1.38441 * 120.28155 * 0.04647 * 20 19 18 22 22 C 1.38112 * 120.28144 * 359.95054 * 21 20 19 23 23 C 1.38665 * 119.85111 * 0.02562 * 22 21 20 24 24 N 1.39281 * 133.33048 * 179.97438 * 23 22 21 25 25 C 1.46489 * 125.82171 * 0.06103 * 24 23 22 26 26 C 1.34639 * 125.81406 * 269.68713 * 17 16 15 27 27 O 1.21685 * 125.16521 * 0.02562 * 26 17 16 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47109 * 299.99718 * 15 13 12 33 33 H 1.08998 * 109.47275 * 60.00156 * 15 13 12 34 34 H 1.09002 * 109.46702 * 299.99447 * 16 15 13 35 35 H 1.08998 * 109.47070 * 60.00035 * 16 15 13 36 36 H 1.08004 * 120.07311 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.85938 * 180.02562 * 20 19 18 38 38 H 1.07998 * 119.85902 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.07146 * 180.02562 * 22 21 20 40 40 H 1.09005 * 109.47357 * 90.00077 * 25 24 23 41 41 H 1.09000 * 109.47236 * 209.99774 * 25 24 23 42 42 H 1.08998 * 109.47569 * 329.99910 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 8 2.0140 -0.6846 -1.1855 13 6 2.2172 0.0639 -2.2811 14 8 1.9974 1.2516 -2.2507 15 6 2.7183 -0.5774 -3.5495 16 6 2.8624 0.4887 -4.6375 17 7 3.3490 -0.1348 -5.8707 18 6 2.5548 -0.6697 -6.8820 19 6 1.1838 -0.7860 -7.0543 20 6 0.6823 -1.3817 -8.1948 21 6 1.5425 -1.8642 -9.1664 22 6 2.9095 -1.7528 -9.0037 23 6 3.4223 -1.1557 -7.8621 24 7 4.7169 -0.9007 -7.4161 25 6 5.9514 -1.2406 -8.1277 26 6 4.6402 -0.2831 -6.2221 27 8 5.5933 0.0823 -5.5597 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7082 1.1609 3.4844 32 1 3.6872 -1.0410 -3.3640 33 1 2.0088 -1.3370 -3.8775 34 1 1.8933 0.9519 -4.8229 35 1 3.5717 1.2487 -4.3097 36 1 0.5096 -0.4115 -6.2982 37 1 -0.3855 -1.4720 -8.3293 38 1 1.1429 -2.3292 -10.0554 39 1 3.5775 -2.1299 -9.7639 40 1 6.2391 -0.4107 -8.7731 41 1 6.7457 -1.4320 -7.4063 42 1 5.7881 -2.1321 -8.7333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113689804.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:28 Heat of formation + Delta-G solvation = -79.690605 kcal Electronic energy + Delta-G solvation = -26048.898972 eV Core-core repulsion = 22187.264602 eV Total energy + Delta-G solvation = -3861.634370 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.57226 -41.40130 -39.38905 -37.96814 -37.05102 -36.92314 -35.37183 -33.36137 -31.67248 -31.36447 -29.96574 -28.58357 -27.48399 -25.93121 -23.63747 -23.41104 -23.24966 -21.62849 -21.21023 -19.08430 -18.97151 -18.72722 -18.14068 -17.78796 -17.34876 -17.19406 -17.01309 -16.36985 -15.93427 -15.44998 -15.25368 -14.99724 -14.97240 -14.69760 -14.58945 -14.24230 -14.05499 -13.84899 -13.53441 -13.35868 -13.21456 -13.04854 -12.99393 -12.83851 -12.51071 -12.41397 -12.17591 -12.01195 -11.76715 -11.67820 -11.59881 -11.47890 -11.39139 -11.01569 -10.62877 -9.34896 -8.84481 -8.31777 -6.48675 0.27651 0.43216 0.93841 1.21609 1.40176 1.40742 1.54521 1.65981 1.92627 2.23512 2.41818 2.81308 2.98888 3.47718 3.52605 3.52804 3.88932 3.91980 4.03591 4.19576 4.27262 4.36660 4.39135 4.45798 4.49948 4.52197 4.65034 4.67500 4.74646 4.76969 4.81075 4.90594 5.11321 5.13988 5.27471 5.45980 5.53937 5.60859 5.61556 5.68419 5.81709 5.88641 6.03850 6.27726 6.55436 6.86837 6.99688 7.22965 8.76095 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021456 B = 0.002666 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.687594 B =10501.133915 C =11191.771352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.216 3.784 3 H 0.009 0.991 4 C -0.551 4.551 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.983 3.017 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.268 1.268 12 O -0.363 6.363 13 C 0.457 3.543 14 O -0.547 6.547 15 C -0.115 4.115 16 C 0.152 3.848 17 N -0.538 5.538 18 C 0.061 3.939 19 C -0.113 4.113 20 C -0.105 4.105 21 C -0.102 4.102 22 C -0.100 4.100 23 C 0.071 3.929 24 N -0.540 5.540 25 C 0.094 3.906 26 C 0.660 3.340 27 O -0.599 6.599 28 H 0.028 0.972 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.272 0.728 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.136 0.864 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.157 0.843 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -8.277 -28.582 29.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.162 3.838 3 H 0.026 0.974 4 C -0.589 4.589 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.806 3.194 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.193 1.193 12 O -0.279 6.279 13 C 0.301 3.699 14 O -0.439 6.439 15 C -0.154 4.154 16 C 0.030 3.970 17 N -0.258 5.258 18 C -0.039 4.039 19 C -0.134 4.134 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.029 4.029 24 N -0.262 5.262 25 C -0.046 4.046 26 C 0.363 3.637 27 O -0.479 6.479 28 H 0.047 0.953 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.151 0.849 34 H 0.133 0.867 35 H 0.101 0.899 36 H 0.154 0.846 37 H 0.177 0.823 38 H 0.184 0.816 39 H 0.175 0.825 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.297 -7.533 -27.884 28.912 hybrid contribution 0.485 0.364 1.421 1.545 sum 1.781 -7.168 -26.462 27.474 Atomic orbital electron populations 1.21974 0.96259 1.00574 1.01084 1.20407 0.92367 0.92045 0.78934 0.97362 1.21339 1.33502 1.13934 0.90106 0.91668 1.25826 0.94690 0.95680 1.02115 1.70013 1.36485 1.23579 1.25240 0.85133 0.78415 0.78372 0.77470 1.18919 1.20141 1.19348 1.86480 1.76078 1.43828 1.21552 1.23882 0.73900 0.85647 0.86424 1.90601 1.50046 1.18027 1.85218 1.21628 1.04918 1.00282 0.88545 1.21166 1.02404 0.93448 0.79965 1.45093 1.05438 1.56276 1.19016 1.18493 0.94018 1.02495 0.88906 1.20433 0.89949 1.02372 1.00613 1.21295 1.01780 0.97176 0.92159 1.21341 0.91316 0.99150 1.00301 1.20457 0.96785 1.00263 0.94619 1.18453 0.82263 1.04493 0.97741 1.45131 1.07372 1.55181 1.18491 1.22017 0.82372 1.03252 0.96985 1.16282 0.83191 0.81607 0.82586 1.91006 1.39530 1.59055 1.58269 0.95265 0.90052 0.93393 0.91903 0.87619 0.84867 0.86686 0.89928 0.84608 0.82288 0.81555 0.82520 0.90177 0.90562 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.25 9.33 71.98 0.67 -6.58 16 2 C 0.22 12.04 2.56 29.85 0.08 12.12 16 3 H 0.01 0.53 7.16 -2.39 -0.02 0.52 16 4 C -0.55 -32.00 8.90 25.60 0.23 -31.78 16 5 H 0.07 3.74 7.81 -2.91 -0.02 3.72 16 6 C 0.02 0.94 5.30 84.66 0.45 1.38 16 7 N -0.92 -53.02 11.32 21.45 0.24 -52.78 16 8 Si 0.98 43.60 29.54 68.60 2.03 45.62 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 12 O -0.36 -17.83 9.86 -51.46 -0.51 -18.33 16 13 C 0.46 19.31 7.93 71.24 0.56 19.87 16 14 O -0.55 -25.99 15.20 21.96 0.33 -25.65 16 15 C -0.12 -3.53 6.14 29.85 0.18 -3.34 16 16 C 0.15 4.38 5.27 86.38 0.45 4.84 16 17 N -0.54 -14.60 2.78 -648.39 -1.81 -16.41 16 18 C 0.06 1.30 6.83 38.40 0.26 1.56 16 19 C -0.11 -1.81 10.02 22.34 0.22 -1.59 16 20 C -0.10 -1.07 10.03 22.29 0.22 -0.84 16 21 C -0.10 -0.80 10.03 22.29 0.22 -0.58 16 22 C -0.10 -1.08 10.02 22.34 0.22 -0.85 16 23 C 0.07 1.32 6.83 38.39 0.26 1.58 16 24 N -0.54 -11.92 3.18 -671.91 -2.14 -14.06 16 25 C 0.09 1.28 11.00 127.77 1.41 2.68 16 26 C 0.66 20.15 8.45 179.14 1.51 21.67 16 27 O -0.60 -23.00 17.48 -4.30 -0.08 -23.08 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 4.49 6.07 -2.39 -0.01 4.48 16 30 H 0.05 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.13 3.31 8.14 -2.39 -0.02 3.30 16 34 H 0.12 2.93 8.10 -2.39 -0.02 2.91 16 35 H 0.08 2.75 7.99 -2.39 -0.02 2.73 16 36 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 38 H 0.17 0.21 8.06 -2.91 -0.02 0.19 16 39 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 40 H 0.08 0.89 8.14 -2.38 -0.02 0.88 16 41 H 0.08 1.22 8.04 -2.39 -0.02 1.20 16 42 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -78.36 363.88 6.07 -72.29 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 1.03 Total: 12.26 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 6.97 Total: 20.14 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -3.70 Total: -83.25 kcal Atomic # 8 Polarization: -66.82 SS G_CDS: -0.25 Total: -67.06 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -78.36 6.07 -72.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113689804.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.402 kcal (2) G-P(sol) polarization free energy of solvation -78.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds