Wall clock time and date at job start Tue Mar 31 2020 13:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47213 * 2 1 4 4 C 1.39289 * 125.81581 * 270.02208 * 3 2 1 5 5 C 1.38654 * 133.33659 * 359.97438 * 4 3 2 6 6 C 1.38102 * 119.85378 * 179.97438 * 5 4 3 7 7 C 1.38439 * 120.28169 * 0.09446 * 6 5 4 8 8 C 1.38109 * 120.28270 * 359.95754 * 7 6 5 9 9 C 1.38657 * 119.84959 * 359.97438 * 8 7 6 10 10 N 1.39284 * 133.33119 * 180.02562 * 9 8 7 11 11 C 1.46496 * 125.81946 * 0.22514 * 10 9 8 12 12 C 1.50703 * 109.47119 * 269.71659 * 11 10 9 13 13 O 1.20826 * 119.99855 * 359.97438 * 12 11 10 14 14 O 1.34229 * 120.00311 * 180.02562 * 12 11 10 15 15 C 1.45197 * 117.00253 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47480 * 29.99789 * 15 14 12 17 17 C 1.53002 * 109.47044 * 269.99691 * 15 14 12 18 18 C 1.50700 * 109.47291 * 149.99787 * 15 14 12 19 19 H 1.08004 * 119.99331 * 0.02562 * 18 15 14 20 20 C 1.37872 * 120.00037 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00401 * 359.97438 * 20 18 15 22 22 Si 1.86806 * 120.00007 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.46894 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47209 * 119.99637 * 22 20 18 25 25 H 1.48493 * 109.47208 * 240.00328 * 22 20 18 26 26 C 1.34634 * 125.82105 * 90.02173 * 3 2 1 27 27 O 1.21686 * 125.16487 * 0.02562 * 26 3 2 28 28 H 1.09003 * 109.46929 * 60.00245 * 1 2 3 29 29 H 1.09001 * 109.47578 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47197 * 300.00544 * 1 2 3 31 31 H 1.08997 * 109.47410 * 239.99323 * 2 1 3 32 32 H 1.09003 * 109.46929 * 119.99755 * 2 1 3 33 33 H 1.08008 * 120.07449 * 0.02577 * 5 4 3 34 34 H 1.08004 * 119.86169 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.86012 * 179.97438 * 7 6 5 36 36 H 1.07998 * 120.07022 * 180.02562 * 8 7 6 37 37 H 1.08998 * 109.47507 * 29.71383 * 11 10 9 38 38 H 1.09005 * 109.47172 * 149.72177 * 11 10 9 39 39 H 1.08997 * 109.47063 * 300.00355 * 17 15 14 40 40 H 1.09006 * 109.46930 * 59.99829 * 17 15 14 41 41 H 1.09004 * 109.47254 * 179.97438 * 17 15 14 42 42 H 0.96990 * 120.00224 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2896 2.1498 -1.1295 5 6 2.2025 1.9038 -2.4913 6 6 2.5506 2.8912 -3.3919 7 6 2.9878 4.1249 -2.9408 8 6 3.0789 4.3789 -1.5863 9 6 2.7303 3.3941 -0.6745 10 7 2.7127 3.3432 0.7173 11 6 3.0940 4.4323 1.6199 12 6 4.5644 4.3324 1.9347 13 8 5.2258 3.4425 1.4547 14 8 5.1390 5.2314 2.7492 15 6 6.5591 5.0739 3.0075 16 1 7.0371 4.6146 2.1423 17 6 6.7584 4.1812 4.2340 18 6 7.1759 6.4248 3.2639 19 1 6.5618 7.3128 3.2359 20 6 8.5238 6.5269 3.5352 21 7 9.2713 5.4454 3.5708 22 14 9.2885 8.2015 3.8523 23 1 8.2414 9.2500 3.7560 24 1 9.8865 8.2233 5.2114 25 1 10.3453 8.4624 2.8422 26 6 2.2814 2.1239 1.0917 27 8 2.1500 1.7499 2.2421 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8625 0.9423 -2.8470 34 1 2.4824 2.6999 -4.4526 35 1 3.2587 4.8920 -3.6511 36 1 3.4200 5.3426 -1.2382 37 1 2.8893 5.3897 1.1410 38 1 2.5190 4.3573 2.5429 39 1 6.2804 4.6405 5.0992 40 1 6.3123 3.2041 4.0485 41 1 7.8245 4.0626 4.4277 42 1 10.2196 5.5173 3.7613 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113693669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:38 Heat of formation + Delta-G solvation = -55.550145 kcal Electronic energy + Delta-G solvation = -26776.198923 eV Core-core repulsion = 22915.611362 eV Total energy + Delta-G solvation = -3860.587561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.58547 -39.54318 -38.38437 -36.43607 -35.98275 -35.41693 -33.30278 -32.13858 -30.74008 -29.69690 -28.92158 -27.96791 -25.33644 -24.16490 -22.80448 -22.48548 -21.86657 -20.49943 -19.63845 -18.08478 -17.62986 -17.40146 -16.64816 -16.17857 -16.10200 -15.62879 -15.31438 -14.99058 -14.69049 -14.39831 -14.31996 -14.14288 -13.79607 -13.33714 -13.05007 -12.90493 -12.66827 -12.50756 -12.21231 -12.08210 -11.78223 -11.49936 -11.27222 -11.21599 -11.11028 -10.90687 -10.82910 -10.59324 -10.48681 -10.38097 -10.30052 -9.70921 -9.58004 -8.92862 -8.52883 -8.49979 -7.85568 -6.20237 -4.27783 1.09813 1.25754 1.93869 2.81140 2.86285 3.06614 3.22421 3.29133 3.33983 3.55904 3.72271 4.31321 4.33340 4.46222 4.75971 4.80550 4.85210 4.96403 5.06603 5.08076 5.12664 5.21102 5.25090 5.34824 5.42109 5.52716 5.59771 5.67396 5.84287 5.94524 6.17011 6.34498 6.39675 6.50425 6.62291 6.67884 6.89113 6.90612 7.12027 7.23782 7.57013 7.70383 7.89976 8.10778 8.15211 8.55535 8.83414 9.37698 10.87207 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019292 B = 0.003313 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.051745 B = 8449.932611 C = 9346.356707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 N -0.539 5.539 4 C 0.094 3.906 5 C -0.108 4.108 6 C -0.113 4.113 7 C -0.110 4.110 8 C -0.101 4.101 9 C 0.101 3.899 10 N -0.524 5.524 11 C 0.137 3.863 12 C 0.434 3.566 13 O -0.506 6.506 14 O -0.353 6.353 15 C 0.217 3.783 16 H 0.046 0.954 17 C -0.155 4.155 18 C -0.521 4.521 19 H 0.070 0.930 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.913 3.087 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.688 3.312 27 O -0.549 6.549 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.038 0.962 40 H 0.016 0.984 41 H 0.100 0.900 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.510 -6.288 -13.741 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.007 3.993 3 N -0.261 5.261 4 C -0.007 4.007 5 C -0.129 4.129 6 C -0.133 4.133 7 C -0.130 4.130 8 C -0.122 4.122 9 C 0.000 4.000 10 N -0.246 5.246 11 C 0.014 3.986 12 C 0.275 3.725 13 O -0.395 6.395 14 O -0.269 6.269 15 C 0.165 3.835 16 H 0.064 0.936 17 C -0.213 4.213 18 C -0.559 4.559 19 H 0.088 0.912 20 C -0.140 4.140 21 N -0.526 5.526 22 Si 0.740 3.260 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.207 1.207 26 C 0.392 3.608 27 O -0.424 6.424 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.057 0.943 40 H 0.035 0.965 41 H 0.118 0.882 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.174 -6.919 -12.841 22.532 hybrid contribution 0.758 0.653 0.272 1.037 sum -16.416 -6.266 -12.569 21.604 Atomic orbital electron populations 1.22177 0.94802 1.02829 1.02971 1.21531 0.94917 0.78512 1.04360 1.45148 1.62685 1.13833 1.04417 1.18055 1.03536 0.89765 0.89355 1.19995 1.03957 1.00508 0.88438 1.20824 1.00270 0.92976 0.99222 1.20848 1.00429 0.97563 0.94173 1.20154 1.01902 0.98252 0.91877 1.18061 1.03398 0.95594 0.82903 1.44636 1.61674 1.13632 1.04632 1.20945 0.91951 0.89682 0.96035 1.23533 0.90627 0.80902 0.77488 1.90642 1.64596 1.33892 1.50349 1.86470 1.31435 1.50120 1.58879 1.20683 0.70332 0.97278 0.95237 0.93590 1.22166 1.04624 0.96094 0.98430 1.21054 0.93462 0.91811 1.49595 0.91157 1.24904 0.96544 0.97756 0.94824 1.69911 1.06615 1.27784 1.48298 0.86202 0.79073 0.82815 0.77938 1.19426 1.20691 1.20739 1.15863 0.80032 0.80299 0.84648 1.91034 1.60521 1.74003 1.16879 0.92062 0.90712 0.91834 0.89298 0.88834 0.85481 0.85135 0.84972 0.85116 0.85380 0.85099 0.94305 0.96519 0.88182 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.13 1.28 6.69 -4.05 -0.03 1.25 16 3 N -0.54 -7.47 2.78 -118.91 -0.33 -7.81 16 4 C 0.09 1.21 6.83 -83.80 -0.57 0.64 16 5 C -0.11 -1.04 10.02 -39.48 -0.40 -1.43 16 6 C -0.11 -0.97 10.03 -39.56 -0.40 -1.36 16 7 C -0.11 -1.04 10.03 -39.55 -0.40 -1.44 16 8 C -0.10 -1.20 10.02 -39.47 -0.40 -1.59 16 9 C 0.10 1.45 6.83 -83.80 -0.57 0.87 16 10 N -0.52 -8.53 2.27 -120.20 -0.27 -8.81 16 11 C 0.14 2.14 6.57 -5.19 -0.03 2.11 16 12 C 0.43 9.32 8.00 36.01 0.29 9.61 16 13 O -0.51 -12.63 15.65 -18.75 -0.29 -12.92 16 14 O -0.35 -8.46 9.86 -39.25 -0.39 -8.84 16 15 C 0.22 5.94 2.56 -27.88 -0.07 5.87 16 16 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 17 C -0.16 -4.11 9.32 37.16 0.35 -3.76 16 18 C -0.52 -14.68 8.90 -34.44 -0.31 -14.98 16 19 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 22 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.69 12.00 8.45 -87.17 -0.74 11.27 16 27 O -0.55 -11.14 17.48 5.20 0.09 -11.05 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 33 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.13 1.86 8.04 -51.93 -0.42 1.44 16 39 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 2.80 6.07 -51.93 -0.32 2.48 16 42 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -35.75 364.66 -8.79 -44.54 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.72 Total: 0.54 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -2.98 Total: 7.69 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.02 Total: -41.48 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.59 Total: -32.82 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.75 -8.79 -44.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.008 kcal (2) G-P(sol) polarization free energy of solvation -35.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds