Wall clock time and date at job start Tue Mar 31 2020 13:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47213 * 2 1 4 4 C 1.39289 * 125.81581 * 270.02208 * 3 2 1 5 5 C 1.38654 * 133.33659 * 359.97438 * 4 3 2 6 6 C 1.38102 * 119.85378 * 179.97438 * 5 4 3 7 7 C 1.38439 * 120.28169 * 0.09446 * 6 5 4 8 8 C 1.38109 * 120.28270 * 359.95754 * 7 6 5 9 9 C 1.38657 * 119.84959 * 359.97438 * 8 7 6 10 10 N 1.39284 * 133.33119 * 180.02562 * 9 8 7 11 11 C 1.46496 * 125.81946 * 0.22514 * 10 9 8 12 12 C 1.50703 * 109.47119 * 269.71659 * 11 10 9 13 13 O 1.20826 * 119.99855 * 359.97438 * 12 11 10 14 14 O 1.34229 * 120.00311 * 180.02562 * 12 11 10 15 15 C 1.45197 * 117.00253 * 180.02562 * 14 12 11 16 16 H 1.08997 * 109.47480 * 29.99789 * 15 14 12 17 17 C 1.53002 * 109.47044 * 269.99691 * 15 14 12 18 18 C 1.50700 * 109.47291 * 149.99787 * 15 14 12 19 19 H 1.08004 * 119.99331 * 0.02562 * 18 15 14 20 20 C 1.37872 * 120.00037 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00401 * 359.97438 * 20 18 15 22 22 Si 1.86806 * 120.00007 * 179.97438 * 20 18 15 23 23 H 1.48499 * 109.46894 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47209 * 119.99637 * 22 20 18 25 25 H 1.48493 * 109.47208 * 240.00328 * 22 20 18 26 26 C 1.34634 * 125.82105 * 90.02173 * 3 2 1 27 27 O 1.21686 * 125.16487 * 0.02562 * 26 3 2 28 28 H 1.09003 * 109.46929 * 60.00245 * 1 2 3 29 29 H 1.09001 * 109.47578 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47197 * 300.00544 * 1 2 3 31 31 H 1.08997 * 109.47410 * 239.99323 * 2 1 3 32 32 H 1.09003 * 109.46929 * 119.99755 * 2 1 3 33 33 H 1.08008 * 120.07449 * 0.02577 * 5 4 3 34 34 H 1.08004 * 119.86169 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.86012 * 179.97438 * 7 6 5 36 36 H 1.07998 * 120.07022 * 180.02562 * 8 7 6 37 37 H 1.08998 * 109.47507 * 29.71383 * 11 10 9 38 38 H 1.09005 * 109.47172 * 149.72177 * 11 10 9 39 39 H 1.08997 * 109.47063 * 300.00355 * 17 15 14 40 40 H 1.09006 * 109.46930 * 59.99829 * 17 15 14 41 41 H 1.09004 * 109.47254 * 179.97438 * 17 15 14 42 42 H 0.96990 * 120.00224 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2896 2.1498 -1.1295 5 6 2.2025 1.9038 -2.4913 6 6 2.5506 2.8912 -3.3919 7 6 2.9878 4.1249 -2.9408 8 6 3.0789 4.3789 -1.5863 9 6 2.7303 3.3941 -0.6745 10 7 2.7127 3.3432 0.7173 11 6 3.0940 4.4323 1.6199 12 6 4.5644 4.3324 1.9347 13 8 5.2258 3.4425 1.4547 14 8 5.1390 5.2314 2.7492 15 6 6.5591 5.0739 3.0075 16 1 7.0371 4.6146 2.1423 17 6 6.7584 4.1812 4.2340 18 6 7.1759 6.4248 3.2639 19 1 6.5618 7.3128 3.2359 20 6 8.5238 6.5269 3.5352 21 7 9.2713 5.4454 3.5708 22 14 9.2885 8.2015 3.8523 23 1 8.2414 9.2500 3.7560 24 1 9.8865 8.2233 5.2114 25 1 10.3453 8.4624 2.8422 26 6 2.2814 2.1239 1.0917 27 8 2.1500 1.7499 2.2421 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.8625 0.9423 -2.8470 34 1 2.4824 2.6999 -4.4526 35 1 3.2587 4.8920 -3.6511 36 1 3.4200 5.3426 -1.2382 37 1 2.8893 5.3897 1.1410 38 1 2.5190 4.3573 2.5429 39 1 6.2804 4.6405 5.0992 40 1 6.3123 3.2041 4.0485 41 1 7.8245 4.0626 4.4277 42 1 10.2196 5.5173 3.7613 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113693669.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:37 Heat of formation + Delta-G solvation = -75.994309 kcal Electronic energy + Delta-G solvation = -26777.085448 eV Core-core repulsion = 22915.611362 eV Total energy + Delta-G solvation = -3861.474086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.65053 -41.35971 -39.41620 -37.97297 -37.11788 -36.85381 -35.39929 -33.10558 -31.93356 -31.42123 -29.83202 -29.19312 -27.51469 -25.16917 -24.03249 -23.45171 -23.27831 -21.94423 -21.14128 -19.17268 -19.03235 -18.85220 -18.38902 -17.63477 -17.29453 -17.13847 -16.95224 -16.56098 -15.93684 -15.49270 -15.30334 -15.09569 -14.93845 -14.61176 -14.38431 -14.20234 -14.06469 -13.90138 -13.53737 -13.25815 -13.15773 -13.06846 -12.89923 -12.85800 -12.45888 -12.25544 -12.17302 -12.13938 -12.00509 -11.74663 -11.68236 -11.50371 -11.32955 -11.05128 -10.64985 -9.39328 -8.87108 -8.31773 -6.49844 0.25622 0.39476 0.83098 1.12689 1.41103 1.42885 1.53066 1.58808 1.96560 2.18062 2.39996 2.80189 2.99037 3.44236 3.52314 3.73507 3.85312 3.96192 4.02601 4.12625 4.22736 4.34906 4.36209 4.43546 4.44708 4.45332 4.69021 4.74357 4.76063 4.85311 4.87192 5.04026 5.10412 5.17658 5.24618 5.42986 5.49987 5.53163 5.57764 5.65722 5.78551 5.82824 5.98540 6.23653 6.54362 6.79506 6.95908 7.21779 8.76518 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019292 B = 0.003313 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.051745 B = 8449.932611 C = 9346.356707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 N -0.535 5.535 4 C 0.073 3.927 5 C -0.101 4.101 6 C -0.101 4.101 7 C -0.106 4.106 8 C -0.116 4.116 9 C 0.062 3.938 10 N -0.530 5.530 11 C 0.147 3.853 12 C 0.431 3.569 13 O -0.546 6.546 14 O -0.355 6.355 15 C 0.220 3.780 16 H 0.006 0.994 17 C -0.143 4.143 18 C -0.547 4.547 19 H 0.074 0.926 20 C 0.014 3.986 21 N -0.920 5.920 22 Si 0.988 3.012 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.275 1.275 26 C 0.668 3.332 27 O -0.597 6.597 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.037 0.963 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.162 0.838 36 H 0.133 0.867 37 H 0.172 0.828 38 H 0.145 0.855 39 H 0.048 0.952 40 H 0.013 0.987 41 H 0.083 0.917 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.527 -5.335 -16.435 25.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.003 4.003 3 N -0.256 5.256 4 C -0.027 4.027 5 C -0.122 4.122 6 C -0.120 4.120 7 C -0.125 4.125 8 C -0.137 4.137 9 C -0.038 4.038 10 N -0.251 5.251 11 C 0.023 3.977 12 C 0.273 3.727 13 O -0.437 6.437 14 O -0.271 6.271 15 C 0.167 3.833 16 H 0.024 0.976 17 C -0.201 4.201 18 C -0.584 4.584 19 H 0.092 0.908 20 C -0.186 4.186 21 N -0.557 5.557 22 Si 0.811 3.189 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.200 1.200 26 C 0.371 3.629 27 O -0.477 6.477 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.056 0.944 31 H 0.139 0.861 32 H 0.095 0.905 33 H 0.177 0.823 34 H 0.188 0.812 35 H 0.179 0.821 36 H 0.151 0.849 37 H 0.189 0.811 38 H 0.162 0.838 39 H 0.067 0.933 40 H 0.032 0.968 41 H 0.102 0.898 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.224 -5.976 -15.603 24.725 hybrid contribution 1.056 0.282 0.919 1.428 sum -17.168 -5.694 -14.684 23.298 Atomic orbital electron populations 1.22105 0.93110 1.04300 1.02167 1.21884 0.96343 0.76945 1.05089 1.45303 1.61822 1.14603 1.03875 1.18472 1.04649 0.89254 0.90290 1.20471 1.02647 1.02218 0.86858 1.21355 0.97767 0.91881 1.01002 1.21298 0.98937 0.98835 0.93427 1.20439 1.02313 0.98105 0.92831 1.18503 1.05831 0.97385 0.82051 1.44692 1.61302 1.13343 1.05797 1.21136 0.87246 0.91767 0.97507 1.24753 0.92703 0.79385 0.75821 1.90614 1.66105 1.35284 1.51666 1.86460 1.29648 1.51107 1.59882 1.20376 0.72038 0.97178 0.93733 0.97598 1.22007 1.03518 0.95945 0.98629 1.21324 0.94339 0.91970 1.50763 0.90823 1.25916 0.96727 1.02054 0.93869 1.70036 1.07127 1.30234 1.48344 0.85055 0.78174 0.77638 0.78047 1.18291 1.19848 1.20012 1.16228 0.80641 0.81043 0.84965 1.90968 1.62880 1.75078 1.18743 0.91006 0.88045 0.94366 0.86093 0.90530 0.82306 0.81167 0.82084 0.84884 0.81120 0.83759 0.93290 0.96814 0.89840 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.24 71.98 0.74 -1.65 16 2 C 0.12 2.29 6.69 86.38 0.58 2.87 16 3 N -0.53 -14.96 2.78 -648.42 -1.81 -16.77 16 4 C 0.07 1.82 6.83 38.39 0.26 2.08 16 5 C -0.10 -1.61 10.02 22.34 0.22 -1.38 16 6 C -0.10 -1.28 10.03 22.29 0.22 -1.05 16 7 C -0.11 -1.64 10.03 22.29 0.22 -1.42 16 8 C -0.12 -2.61 10.02 22.34 0.22 -2.39 16 9 C 0.06 1.74 6.83 38.39 0.26 2.01 16 10 N -0.53 -17.74 2.27 -652.49 -1.48 -19.22 16 11 C 0.15 4.67 6.57 85.63 0.56 5.23 16 12 C 0.43 19.23 8.00 71.24 0.57 19.80 16 13 O -0.55 -28.74 15.65 21.96 0.34 -28.39 16 14 O -0.36 -17.57 9.86 -51.40 -0.51 -18.07 16 15 C 0.22 12.52 2.56 29.85 0.08 12.60 16 16 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16 17 C -0.14 -7.87 9.32 71.98 0.67 -7.20 16 18 C -0.55 -31.29 8.90 25.60 0.23 -31.06 16 19 H 0.07 4.06 7.81 -2.91 -0.02 4.04 16 20 C 0.01 0.77 5.30 84.65 0.45 1.22 16 21 N -0.92 -53.75 11.32 21.45 0.24 -53.51 16 22 Si 0.99 42.87 29.54 68.60 2.03 44.89 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C 0.67 24.41 8.45 179.14 1.51 25.92 16 27 O -0.60 -25.87 17.48 -4.30 -0.08 -25.94 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.74 8.03 -2.39 -0.02 1.72 16 33 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 35 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 37 H 0.17 3.85 8.14 -2.39 -0.02 3.83 16 38 H 0.14 4.20 8.04 -2.38 -0.02 4.18 16 39 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.08 4.85 6.07 -2.39 -0.01 4.84 16 42 H 0.27 14.74 8.31 -92.72 -0.77 13.97 16 Total: -1.00 -82.83 364.66 6.57 -76.25 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.03 Total: 15.19 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 6.80 Total: 25.58 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -3.05 Total: -89.50 kcal Atomic # 8 Polarization: -72.17 SS G_CDS: -0.24 Total: -72.41 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -82.83 6.57 -76.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113693669.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.257 kcal (2) G-P(sol) polarization free energy of solvation -82.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds