Wall clock time and date at job start Tue Mar 31 2020 12:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99942 * 2 1 4 4 O 1.42902 * 109.47092 * 134.99523 * 3 2 1 5 5 C 1.35904 * 116.99700 * 179.97438 * 4 3 2 6 6 C 1.38821 * 120.01800 * 0.02573 * 5 4 3 7 7 C 1.38174 * 120.09543 * 179.97438 * 6 5 4 8 8 C 1.38155 * 120.13025 * 359.74961 * 7 6 5 9 9 C 1.38943 * 120.03167 * 0.50470 * 8 7 6 10 10 N 1.39730 * 120.04637 * 179.76847 * 9 8 7 11 11 C 1.34773 * 119.99921 * 214.82938 * 10 9 8 12 12 O 1.21381 * 119.99857 * 355.38218 * 11 10 9 13 13 C 1.49355 * 119.99942 * 175.38875 * 11 10 9 14 14 O 1.21361 * 119.99742 * 359.97438 * 13 11 10 15 15 N 1.34779 * 119.99900 * 179.72508 * 13 11 10 16 16 C 1.46498 * 119.99846 * 180.27377 * 15 13 11 17 17 H 1.09003 * 109.47169 * 324.99674 * 16 15 13 18 18 C 1.53000 * 109.47124 * 84.99713 * 16 15 13 19 19 C 1.50697 * 109.47098 * 204.99696 * 16 15 13 20 20 H 1.08001 * 119.99970 * 0.02562 * 19 16 15 21 21 C 1.37873 * 120.00274 * 180.02562 * 19 16 15 22 22 N 1.31520 * 119.99767 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 120.00280 * 180.02562 * 21 19 16 24 24 H 1.48505 * 109.47145 * 89.99785 * 23 21 19 25 25 H 1.48495 * 109.47014 * 209.99653 * 23 21 19 26 26 H 1.48498 * 109.46793 * 329.99880 * 23 21 19 27 27 C 1.38567 * 120.01594 * 180.02562 * 5 4 3 28 28 H 1.08001 * 120.00207 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99620 * 180.02562 * 1 2 3 30 30 H 1.07994 * 120.00245 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46924 * 15.00117 * 3 2 1 32 32 H 1.09001 * 109.47166 * 255.00090 * 3 2 1 33 33 H 1.08002 * 119.94963 * 359.95781 * 6 5 4 34 34 H 1.08004 * 119.93775 * 179.97438 * 7 6 5 35 35 H 1.07997 * 119.98407 * 180.25324 * 8 7 6 36 36 H 0.96998 * 119.99998 * 34.83298 * 10 9 8 37 37 H 0.96997 * 119.99992 * 0.27068 * 15 13 11 38 38 H 1.08996 * 109.47295 * 300.00217 * 18 16 15 39 39 H 1.09003 * 109.47130 * 59.99937 * 18 16 15 40 40 H 1.08998 * 109.47096 * 179.97438 * 18 16 15 41 41 H 0.96998 * 119.99844 * 179.97438 * 22 21 19 42 42 H 1.08001 * 120.06408 * 0.05313 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9528 5 6 3.9096 2.3451 1.0783 6 6 3.6586 3.4668 0.2999 7 6 4.4533 4.5900 0.4266 8 6 5.4970 4.6026 1.3316 9 6 5.7564 3.4810 2.1096 10 7 6.8149 3.4916 3.0217 11 6 7.5212 2.3662 3.2474 12 8 7.1864 1.3241 2.7230 13 6 8.7159 2.4014 4.1431 14 8 9.0508 3.4435 4.6672 15 7 9.4190 1.2748 4.3733 16 6 10.5872 1.3081 5.2566 17 1 11.1032 2.2613 5.1409 18 6 10.1334 1.1469 6.7088 19 6 11.5227 0.1834 4.8949 20 1 11.2722 -0.4887 4.0874 21 6 12.6983 0.0124 5.5946 22 7 13.0035 0.8312 6.5776 23 14 13.8582 -1.3814 5.1457 24 1 14.8260 -0.9100 4.1227 25 1 14.5944 -1.8223 6.3576 26 1 13.0762 -2.5197 4.6000 27 6 4.9589 2.3513 1.9832 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3854 2.1161 0.2660 32 1 2.4755 1.4868 -0.9927 33 1 2.8411 3.4614 -0.4059 34 1 4.2560 5.4612 -0.1806 35 1 6.1141 5.4832 1.4316 36 1 7.0413 4.3090 3.4923 37 1 9.1514 0.4420 3.9542 38 1 9.4567 1.9603 6.9705 39 1 9.6174 0.1937 6.8245 40 1 11.0026 1.1712 7.3660 41 1 13.8304 0.7106 7.0701 42 1 5.1562 1.4792 2.5890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122894269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:26 Heat of formation + Delta-G solvation = -55.225318 kcal Electronic energy + Delta-G solvation = -25260.897945 eV Core-core repulsion = 21400.324470 eV Total energy + Delta-G solvation = -3860.573475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.94572 -39.96775 -38.49650 -37.44758 -35.32941 -34.65915 -34.19683 -32.42469 -30.65383 -29.62311 -29.09401 -26.90915 -25.36853 -24.88732 -23.03644 -22.07550 -20.87406 -20.27845 -19.64048 -18.93635 -18.21633 -16.79906 -16.47308 -16.30132 -16.21520 -15.99144 -15.52448 -15.38575 -15.10309 -14.60630 -14.17055 -13.95848 -13.74143 -13.39800 -13.23342 -13.19403 -12.77540 -12.49438 -12.07527 -11.83744 -11.81287 -11.66001 -11.38580 -11.15674 -11.02789 -10.97921 -10.79668 -10.38290 -10.34756 -10.28159 -9.93583 -9.17423 -9.09815 -8.63361 -8.57645 -8.24941 -8.14409 -6.18250 -4.27817 0.98738 1.27490 1.64201 1.86339 2.59453 3.11099 3.23831 3.30489 3.33683 3.51732 3.73900 4.07424 4.32822 4.40568 4.59511 4.65364 4.80308 4.90012 4.99140 5.02693 5.05572 5.14944 5.16899 5.35460 5.41210 5.64439 6.03167 6.07549 6.09544 6.16278 6.20291 6.26906 6.63940 6.70838 6.83290 7.00533 7.06401 7.19974 7.23278 7.38748 7.60924 7.76021 7.88688 8.03897 8.41455 8.59123 8.83475 9.39215 10.87779 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.002406 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.730345 B =11634.371384 C =12612.198327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.155 4.155 3 C 0.087 3.913 4 O -0.308 6.308 5 C 0.147 3.853 6 C -0.227 4.227 7 C -0.061 4.061 8 C -0.179 4.179 9 C 0.188 3.812 10 N -0.651 5.651 11 C 0.507 3.493 12 O -0.500 6.500 13 C 0.496 3.504 14 O -0.535 6.535 15 N -0.667 5.667 16 C 0.261 3.739 17 H 0.055 0.945 18 C -0.149 4.149 19 C -0.536 4.536 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.883 5.883 23 Si 0.905 3.095 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.272 1.272 27 C -0.155 4.155 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.425 0.575 37 H 0.403 0.597 38 H 0.017 0.983 39 H 0.030 0.970 40 H 0.095 0.905 41 H 0.266 0.734 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.974 5.036 -12.527 25.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.012 3.988 4 O -0.222 6.222 5 C 0.101 3.899 6 C -0.247 4.247 7 C -0.080 4.080 8 C -0.200 4.200 9 C 0.093 3.907 10 N -0.298 5.298 11 C 0.290 3.710 12 O -0.373 6.373 13 C 0.274 3.726 14 O -0.414 6.414 15 N -0.316 5.316 16 C 0.160 3.840 17 H 0.072 0.928 18 C -0.207 4.207 19 C -0.575 4.575 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.520 5.520 23 Si 0.732 3.268 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.176 4.176 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.139 0.861 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.264 0.736 37 H 0.237 0.763 38 H 0.036 0.964 39 H 0.049 0.951 40 H 0.113 0.887 41 H 0.076 0.924 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.695 4.821 -12.217 25.361 hybrid contribution 0.536 -0.569 -0.389 0.873 sum -21.159 4.253 -12.607 24.994 Atomic orbital electron populations 1.23876 0.95388 1.02549 0.99209 1.22703 0.95675 0.97945 1.00936 1.21831 0.87879 0.96806 0.92291 1.86120 1.41992 1.35640 1.58399 1.18707 0.90739 0.85793 0.94672 1.21197 1.04416 0.94511 1.04528 1.20672 0.93526 0.97340 0.96480 1.20869 1.01513 0.98836 0.98736 1.17413 0.87607 0.94615 0.91113 1.43229 1.30293 1.14609 1.41689 1.21025 0.84441 0.83496 0.82011 1.90747 1.68304 1.29978 1.48245 1.19628 0.84098 0.85905 0.82980 1.90731 1.69037 1.30493 1.51111 1.46512 1.29167 1.09595 1.46289 1.18994 0.80277 0.99131 0.85551 0.92755 1.22100 1.01293 0.97484 0.99842 1.21188 1.04364 1.13789 1.18127 0.91726 1.24882 0.97613 0.96529 0.94606 1.69893 1.24471 1.36890 1.20779 0.86384 0.80590 0.81821 0.77973 1.20484 1.21011 1.19716 1.20480 0.94425 1.00541 1.02147 0.88277 0.87412 0.86095 0.91449 0.90948 0.85552 0.85277 0.85173 0.73635 0.76271 0.96438 0.95061 0.88683 0.92443 0.83292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 14.31 29.01 0.42 -0.59 16 2 C -0.15 -1.16 9.89 -36.02 -0.36 -1.52 16 3 C 0.09 0.71 5.15 36.01 0.19 0.90 16 4 O -0.31 -3.75 10.12 -19.44 -0.20 -3.94 16 5 C 0.15 1.84 6.68 -39.24 -0.26 1.57 16 6 C -0.23 -2.25 9.04 -39.39 -0.36 -2.60 16 7 C -0.06 -0.57 10.03 -39.64 -0.40 -0.96 16 8 C -0.18 -1.90 9.96 -39.35 -0.39 -2.29 16 9 C 0.19 2.49 6.29 -83.77 -0.53 1.97 16 10 N -0.65 -9.15 5.32 -10.31 -0.05 -9.21 16 11 C 0.51 8.73 7.73 -11.63 -0.09 8.64 16 12 O -0.50 -9.30 13.91 5.47 0.08 -9.22 16 13 C 0.50 9.92 7.85 -11.63 -0.09 9.83 16 14 O -0.53 -11.71 16.14 5.49 0.09 -11.62 16 15 N -0.67 -14.31 5.06 -55.40 -0.28 -14.59 16 16 C 0.26 6.55 2.56 -69.09 -0.18 6.38 16 17 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 18 C -0.15 -3.61 9.26 37.16 0.34 -3.27 16 19 C -0.54 -14.14 8.73 -34.44 -0.30 -14.45 16 20 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 21 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 22 N -0.88 -24.38 11.32 55.43 0.63 -23.75 16 23 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.16 -2.23 8.63 -39.23 -0.34 -2.57 16 28 H 0.10 0.47 7.90 -52.49 -0.41 0.05 16 29 H 0.11 0.50 8.06 -52.49 -0.42 0.08 16 30 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.07 0.45 7.38 -51.92 -0.38 0.07 16 32 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 33 H 0.13 0.92 6.29 -52.49 -0.33 0.59 16 34 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.43 5.21 8.30 -40.82 -0.34 4.87 16 37 H 0.40 8.08 8.01 -40.82 -0.33 7.75 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.15 2.42 6.22 -52.49 -0.33 2.09 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -30.56 364.11 -7.02 -37.58 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.30 Total: 10.98 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -2.44 Total: 2.73 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.29 Total: -47.54 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.03 Total: -24.78 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.56 -7.02 -37.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122894269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.645 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds