Wall clock time and date at job start Tue Mar 31 2020 12:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99942 * 2 1 4 4 O 1.42902 * 109.47092 * 134.99523 * 3 2 1 5 5 C 1.35904 * 116.99700 * 179.97438 * 4 3 2 6 6 C 1.38821 * 120.01800 * 0.02573 * 5 4 3 7 7 C 1.38174 * 120.09543 * 179.97438 * 6 5 4 8 8 C 1.38155 * 120.13025 * 359.74961 * 7 6 5 9 9 C 1.38943 * 120.03167 * 0.50470 * 8 7 6 10 10 N 1.39730 * 120.04637 * 179.76847 * 9 8 7 11 11 C 1.34773 * 119.99921 * 214.82938 * 10 9 8 12 12 O 1.21381 * 119.99857 * 355.38218 * 11 10 9 13 13 C 1.49355 * 119.99942 * 175.38875 * 11 10 9 14 14 O 1.21361 * 119.99742 * 359.97438 * 13 11 10 15 15 N 1.34779 * 119.99900 * 179.72508 * 13 11 10 16 16 C 1.46498 * 119.99846 * 180.27377 * 15 13 11 17 17 H 1.09003 * 109.47169 * 324.99674 * 16 15 13 18 18 C 1.53000 * 109.47124 * 84.99713 * 16 15 13 19 19 C 1.50697 * 109.47098 * 204.99696 * 16 15 13 20 20 H 1.08001 * 119.99970 * 0.02562 * 19 16 15 21 21 C 1.37873 * 120.00274 * 180.02562 * 19 16 15 22 22 N 1.31520 * 119.99767 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 120.00280 * 180.02562 * 21 19 16 24 24 H 1.48505 * 109.47145 * 89.99785 * 23 21 19 25 25 H 1.48495 * 109.47014 * 209.99653 * 23 21 19 26 26 H 1.48498 * 109.46793 * 329.99880 * 23 21 19 27 27 C 1.38567 * 120.01594 * 180.02562 * 5 4 3 28 28 H 1.08001 * 120.00207 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99620 * 180.02562 * 1 2 3 30 30 H 1.07994 * 120.00245 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46924 * 15.00117 * 3 2 1 32 32 H 1.09001 * 109.47166 * 255.00090 * 3 2 1 33 33 H 1.08002 * 119.94963 * 359.95781 * 6 5 4 34 34 H 1.08004 * 119.93775 * 179.97438 * 7 6 5 35 35 H 1.07997 * 119.98407 * 180.25324 * 8 7 6 36 36 H 0.96998 * 119.99998 * 34.83298 * 10 9 8 37 37 H 0.96997 * 119.99992 * 0.27068 * 15 13 11 38 38 H 1.08996 * 109.47295 * 300.00217 * 18 16 15 39 39 H 1.09003 * 109.47130 * 59.99937 * 18 16 15 40 40 H 1.08998 * 109.47096 * 179.97438 * 18 16 15 41 41 H 0.96998 * 119.99844 * 179.97438 * 22 21 19 42 42 H 1.08001 * 120.06408 * 0.05313 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9528 5 6 3.9096 2.3451 1.0783 6 6 3.6586 3.4668 0.2999 7 6 4.4533 4.5900 0.4266 8 6 5.4970 4.6026 1.3316 9 6 5.7564 3.4810 2.1096 10 7 6.8149 3.4916 3.0217 11 6 7.5212 2.3662 3.2474 12 8 7.1864 1.3241 2.7230 13 6 8.7159 2.4014 4.1431 14 8 9.0508 3.4435 4.6672 15 7 9.4190 1.2748 4.3733 16 6 10.5872 1.3081 5.2566 17 1 11.1032 2.2613 5.1409 18 6 10.1334 1.1469 6.7088 19 6 11.5227 0.1834 4.8949 20 1 11.2722 -0.4887 4.0874 21 6 12.6983 0.0124 5.5946 22 7 13.0035 0.8312 6.5776 23 14 13.8582 -1.3814 5.1457 24 1 14.8260 -0.9100 4.1227 25 1 14.5944 -1.8223 6.3576 26 1 13.0762 -2.5197 4.6000 27 6 4.9589 2.3513 1.9832 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3854 2.1161 0.2660 32 1 2.4755 1.4868 -0.9927 33 1 2.8411 3.4614 -0.4059 34 1 4.2560 5.4612 -0.1806 35 1 6.1141 5.4832 1.4316 36 1 7.0413 4.3090 3.4923 37 1 9.1514 0.4420 3.9542 38 1 9.4567 1.9603 6.9705 39 1 9.6174 0.1937 6.8245 40 1 11.0026 1.1712 7.3660 41 1 13.8304 0.7106 7.0701 42 1 5.1562 1.4792 2.5890 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122894269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:25 Heat of formation + Delta-G solvation = -75.700498 kcal Electronic energy + Delta-G solvation = -25261.785816 eV Core-core repulsion = 21400.324470 eV Total energy + Delta-G solvation = -3861.461345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.17911 -41.03098 -39.90676 -38.52485 -37.04060 -35.82246 -34.91703 -34.34129 -31.57070 -31.10081 -30.44731 -27.56209 -27.39034 -26.30902 -24.07279 -23.18788 -22.31901 -21.32867 -20.84546 -20.24313 -19.38155 -18.19633 -17.85383 -17.42024 -17.14320 -17.00108 -16.96429 -16.80274 -16.47810 -15.89104 -15.42998 -15.22754 -14.88935 -14.55898 -14.47054 -14.35978 -13.92143 -13.77481 -13.57996 -13.10399 -12.96201 -12.92218 -12.79586 -12.72782 -12.51332 -12.30915 -12.25970 -12.13184 -11.81389 -11.36934 -11.18237 -10.70517 -10.61094 -10.45131 -10.01648 -9.54511 -9.12590 -8.21449 -6.38700 -0.09696 0.41703 0.55563 1.10633 1.27675 1.44975 1.45824 1.56651 2.08363 2.31528 2.39978 2.74770 2.76486 3.09273 3.44096 3.79607 3.93572 4.03670 4.13036 4.21353 4.24727 4.36207 4.49524 4.52149 4.63661 4.68238 4.87007 4.95917 4.99742 5.16579 5.19781 5.27470 5.28114 5.41039 5.43322 5.57816 5.60822 5.63525 5.72842 5.78052 5.97572 6.01863 6.43619 6.49985 6.62662 6.74060 7.02797 7.33226 8.84697 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.002406 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.730345 B =11634.371384 C =12612.198327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.183 4.183 3 C 0.081 3.919 4 O -0.334 6.334 5 C 0.134 3.866 6 C -0.216 4.216 7 C -0.052 4.052 8 C -0.174 4.174 9 C 0.163 3.837 10 N -0.634 5.634 11 C 0.516 3.484 12 O -0.517 6.517 13 C 0.497 3.503 14 O -0.555 6.555 15 N -0.670 5.670 16 C 0.268 3.732 17 H 0.017 0.983 18 C -0.137 4.137 19 C -0.553 4.553 20 H 0.069 0.931 21 C 0.020 3.980 22 N -0.912 5.912 23 Si 0.972 3.028 24 H -0.276 1.276 25 H -0.280 1.280 26 H -0.265 1.265 27 C -0.184 4.184 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.170 0.830 35 H 0.154 0.846 36 H 0.433 0.567 37 H 0.410 0.590 38 H 0.021 0.979 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.268 0.732 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.784 5.847 -14.615 28.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.201 4.201 3 C 0.007 3.993 4 O -0.248 6.248 5 C 0.088 3.912 6 C -0.235 4.235 7 C -0.071 4.071 8 C -0.194 4.194 9 C 0.069 3.931 10 N -0.281 5.281 11 C 0.298 3.702 12 O -0.392 6.392 13 C 0.277 3.723 14 O -0.435 6.435 15 N -0.319 5.319 16 C 0.165 3.835 17 H 0.035 0.965 18 C -0.195 4.195 19 C -0.591 4.591 20 H 0.087 0.913 21 C -0.181 4.181 22 N -0.549 5.549 23 Si 0.797 3.203 24 H -0.202 1.202 25 H -0.206 1.206 26 H -0.189 1.189 27 C -0.205 4.205 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.128 0.872 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.175 0.825 34 H 0.188 0.812 35 H 0.171 0.829 36 H 0.273 0.727 37 H 0.245 0.755 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.553 5.658 -14.327 28.143 hybrid contribution 0.931 -0.744 0.194 1.207 sum -22.622 4.914 -14.133 27.123 Atomic orbital electron populations 1.24115 0.94767 1.03868 0.96469 1.22713 0.96387 0.97488 1.03499 1.22094 0.87312 0.97762 0.92083 1.86094 1.42973 1.36067 1.59696 1.18837 0.90564 0.86902 0.94924 1.21586 1.04829 0.93407 1.03678 1.21175 0.92000 0.98238 0.95638 1.21194 1.01983 0.98321 0.97888 1.17617 0.87628 0.95682 0.92191 1.43044 1.29856 1.13697 1.41502 1.20309 0.83857 0.84310 0.81713 1.90755 1.68625 1.30765 1.49070 1.20058 0.84512 0.84992 0.82717 1.90710 1.69793 1.31064 1.51887 1.46283 1.28726 1.10577 1.46360 1.18646 0.81255 0.97008 0.86555 0.96518 1.21931 1.00459 0.98051 0.99087 1.21475 1.05033 1.14151 1.18434 0.91271 1.25731 0.99113 0.98850 0.94432 1.70015 1.24992 1.38345 1.21574 0.85338 0.78382 0.78887 0.77714 1.20177 1.20564 1.18922 1.20400 0.96407 1.00202 1.03441 0.86716 0.86297 0.87194 0.89627 0.89803 0.82452 0.81225 0.82864 0.72663 0.75464 0.95998 0.94203 0.90672 0.92267 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 14.31 67.78 0.97 -0.53 16 2 C -0.18 -2.59 9.89 25.65 0.25 -2.33 16 3 C 0.08 1.21 5.15 71.24 0.37 1.58 16 4 O -0.33 -8.10 10.12 -92.47 -0.94 -9.03 16 5 C 0.13 3.25 6.68 22.49 0.15 3.40 16 6 C -0.22 -3.59 9.04 22.39 0.20 -3.39 16 7 C -0.05 -0.75 10.03 22.23 0.22 -0.53 16 8 C -0.17 -3.22 9.96 22.42 0.22 -3.00 16 9 C 0.16 4.23 6.29 38.20 0.24 4.47 16 10 N -0.63 -17.83 5.32 -304.88 -1.62 -19.45 16 11 C 0.52 18.19 7.73 87.24 0.67 18.87 16 12 O -0.52 -19.94 13.91 -3.34 -0.05 -19.98 16 13 C 0.50 20.44 7.85 87.24 0.68 21.13 16 14 O -0.55 -24.89 16.14 -3.28 -0.05 -24.94 16 15 N -0.67 -29.57 5.06 -447.53 -2.27 -31.84 16 16 C 0.27 13.83 2.56 44.24 0.11 13.94 16 17 H 0.02 0.99 7.58 -2.39 -0.02 0.98 16 18 C -0.14 -6.81 9.26 71.98 0.67 -6.14 16 19 C -0.55 -29.57 8.73 25.60 0.22 -29.35 16 20 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 21 C 0.02 1.05 5.30 84.65 0.45 1.50 16 22 N -0.91 -51.17 11.32 21.45 0.24 -50.92 16 23 Si 0.97 42.20 29.54 68.60 2.03 44.22 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 26 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 27 C -0.18 -5.39 8.63 22.50 0.19 -5.19 16 28 H 0.11 0.74 7.90 -2.91 -0.02 0.72 16 29 H 0.12 0.86 8.06 -2.91 -0.02 0.84 16 30 H 0.11 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.09 0.92 7.38 -2.38 -0.02 0.90 16 32 H 0.08 1.00 7.66 -2.39 -0.02 0.98 16 33 H 0.16 1.59 6.29 -2.91 -0.02 1.57 16 34 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.43 10.46 8.30 -92.71 -0.77 9.69 16 37 H 0.41 16.88 8.01 -92.71 -0.74 16.13 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 4.06 6.07 -2.39 -0.01 4.04 16 41 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 42 H 0.12 4.13 6.22 -2.91 -0.02 4.11 16 Total: -1.00 -68.11 364.11 2.54 -65.57 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.44 Total: 31.95 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 5.64 Total: 14.42 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -3.64 Total: -102.21 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -1.04 Total: -53.96 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -68.11 2.54 -65.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122894269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.128 kcal (2) G-P(sol) polarization free energy of solvation -68.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds