Wall clock time and date at job start Tue Mar 31 2020 12:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 120.00129 * 2 1 4 4 O 1.42896 * 109.47164 * 135.00114 * 3 2 1 5 5 C 1.35907 * 117.00226 * 179.97438 * 4 3 2 6 6 C 1.38810 * 120.01314 * 0.02562 * 5 4 3 7 7 C 1.38185 * 120.09260 * 179.97438 * 6 5 4 8 8 C 1.38153 * 120.13096 * 359.68720 * 7 6 5 9 9 C 1.38946 * 120.03019 * 0.58816 * 8 7 6 10 10 N 1.39721 * 120.04504 * 179.70391 * 9 8 7 11 11 C 1.34782 * 119.99670 * 214.83277 * 10 9 8 12 12 O 1.21368 * 120.00229 * 355.38006 * 11 10 9 13 13 C 1.49353 * 119.99553 * 175.38366 * 11 10 9 14 14 O 1.21358 * 120.00572 * 359.97438 * 13 11 10 15 15 N 1.34778 * 119.99649 * 179.97438 * 13 11 10 16 16 C 1.46505 * 119.99919 * 179.97438 * 15 13 11 17 17 H 1.09000 * 109.46565 * 35.00428 * 16 15 13 18 18 C 1.52998 * 109.47038 * 275.00410 * 16 15 13 19 19 C 1.50698 * 109.46772 * 155.00138 * 16 15 13 20 20 H 1.07993 * 120.00489 * 0.02562 * 19 16 15 21 21 C 1.37888 * 119.99538 * 179.97438 * 19 16 15 22 22 N 1.31516 * 119.99598 * 179.72552 * 21 19 16 23 23 Si 1.86799 * 120.00036 * 0.02562 * 21 19 16 24 24 H 1.48499 * 109.47002 * 269.72256 * 23 21 19 25 25 H 1.48502 * 109.47291 * 29.71985 * 23 21 19 26 26 H 1.48500 * 109.47093 * 149.72266 * 23 21 19 27 27 C 1.38565 * 120.01792 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.99433 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00047 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99914 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47269 * 14.99831 * 3 2 1 32 32 H 1.08997 * 109.47287 * 254.99762 * 3 2 1 33 33 H 1.08003 * 119.95833 * 359.97438 * 6 5 4 34 34 H 1.07998 * 119.93427 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.98270 * 180.29682 * 8 7 6 36 36 H 0.97001 * 120.00278 * 34.83083 * 10 9 8 37 37 H 0.97001 * 120.00350 * 0.02562 * 15 13 11 38 38 H 1.09000 * 109.47488 * 300.00027 * 18 16 15 39 39 H 1.09000 * 109.47103 * 59.99910 * 18 16 15 40 40 H 1.09002 * 109.47291 * 179.97438 * 18 16 15 41 41 H 0.96994 * 119.99346 * 180.28020 * 22 21 19 42 42 H 1.08002 * 120.06723 * 0.04171 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9098 2.3449 1.0782 6 6 3.6588 3.4665 0.3000 7 6 4.4537 4.5898 0.4267 8 6 5.4966 4.6027 1.3326 9 6 5.7562 3.4808 2.1101 10 7 6.8148 3.4914 3.0220 11 6 7.5214 2.3659 3.2473 12 8 7.1867 1.3240 2.7225 13 6 8.7162 2.4011 4.1427 14 8 9.0511 3.4430 4.6671 15 7 9.4225 1.2756 4.3684 16 6 10.5948 1.3101 5.2463 17 1 10.4217 2.0193 6.0558 18 6 11.8218 1.7439 4.4418 19 6 10.8313 -0.0621 5.8226 20 1 10.1744 -0.8783 5.5608 21 6 11.8871 -0.2756 6.6834 22 7 12.0903 -1.4719 7.1906 23 14 13.0238 1.1360 7.1357 24 1 14.1519 1.1915 6.1716 25 1 12.2689 2.4140 7.0883 26 1 13.5541 0.9248 8.5065 27 6 4.9585 2.3513 1.9838 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3856 2.1160 0.2659 32 1 2.4756 1.4867 -0.9926 33 1 2.8411 3.4615 -0.4056 34 1 4.2563 5.4609 -0.1804 35 1 6.1134 5.4836 1.4330 36 1 7.0412 4.3086 3.4929 37 1 9.1550 0.4428 3.9490 38 1 11.9949 1.0348 3.6323 39 1 11.6506 2.7364 4.0250 40 1 12.6940 1.7701 5.0951 41 1 12.8306 -1.6212 7.7993 42 1 5.1552 1.4795 2.5902 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122894436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:30 Heat of formation + Delta-G solvation = -46.193702 kcal Electronic energy + Delta-G solvation = -25325.230546 eV Core-core repulsion = 21465.048711 eV Total energy + Delta-G solvation = -3860.181835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02159 -40.03958 -38.64422 -37.52321 -35.51226 -34.73920 -34.23354 -32.44090 -30.70063 -30.10932 -29.57164 -26.92971 -25.41526 -24.96700 -23.10298 -22.14473 -20.93676 -20.29219 -19.80132 -19.02450 -18.27127 -16.89433 -16.57232 -16.45934 -16.25334 -16.06055 -15.72217 -15.44940 -15.29723 -14.70549 -14.27859 -14.02626 -13.76179 -13.43651 -13.29863 -13.24602 -12.99609 -12.79397 -12.28108 -12.11511 -11.94882 -11.86185 -11.68824 -11.45810 -11.38082 -11.03282 -10.85010 -10.42810 -10.26032 -9.93761 -9.74662 -9.33197 -9.22480 -8.84374 -8.61772 -8.40307 -8.27880 -6.25050 -4.29085 0.93444 1.23987 1.64017 1.75603 2.49194 3.08150 3.19561 3.31917 3.34239 3.42027 3.65046 3.96094 4.26481 4.39089 4.58642 4.63032 4.77839 4.86608 4.88490 4.96991 4.99352 5.08470 5.13753 5.31717 5.41076 5.59854 5.98665 6.03649 6.09688 6.15334 6.16626 6.20338 6.23502 6.24893 6.43111 6.59323 6.69904 6.88949 7.07952 7.11014 7.20865 7.37089 7.69508 8.00716 8.36281 8.48156 8.75280 9.33161 10.86912 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.002464 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.092318 B =11361.110164 C =12506.694137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.155 4.155 3 C 0.087 3.913 4 O -0.307 6.307 5 C 0.148 3.852 6 C -0.226 4.226 7 C -0.062 4.062 8 C -0.179 4.179 9 C 0.186 3.814 10 N -0.650 5.650 11 C 0.508 3.492 12 O -0.496 6.496 13 C 0.498 3.502 14 O -0.536 6.536 15 N -0.660 5.660 16 C 0.234 3.766 17 H 0.055 0.945 18 C -0.163 4.163 19 C -0.539 4.539 20 H 0.084 0.916 21 C 0.080 3.920 22 N -0.888 5.888 23 Si 0.885 3.115 24 H -0.275 1.275 25 H -0.262 1.262 26 H -0.293 1.293 27 C -0.155 4.155 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.425 0.575 37 H 0.409 0.591 38 H 0.057 0.943 39 H 0.037 0.963 40 H 0.051 0.949 41 H 0.269 0.731 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.736 10.659 -15.548 27.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.012 3.988 4 O -0.221 6.221 5 C 0.102 3.898 6 C -0.246 4.246 7 C -0.080 4.080 8 C -0.199 4.199 9 C 0.092 3.908 10 N -0.298 5.298 11 C 0.291 3.709 12 O -0.368 6.368 13 C 0.277 3.723 14 O -0.415 6.415 15 N -0.309 5.309 16 C 0.132 3.868 17 H 0.072 0.928 18 C -0.221 4.221 19 C -0.577 4.577 20 H 0.102 0.898 21 C -0.124 4.124 22 N -0.524 5.524 23 Si 0.715 3.285 24 H -0.202 1.202 25 H -0.186 1.186 26 H -0.220 1.220 27 C -0.175 4.175 28 H 0.117 0.883 29 H 0.126 0.874 30 H 0.139 0.861 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.263 0.737 37 H 0.245 0.755 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.506 10.278 -15.265 26.817 hybrid contribution 0.623 0.733 0.085 0.966 sum -18.882 11.011 -15.179 26.612 Atomic orbital electron populations 1.23879 0.95387 1.02559 0.99157 1.22703 0.95679 0.97940 1.00976 1.21830 0.87859 0.96844 0.92260 1.86126 1.41970 1.35591 1.58405 1.18707 0.90716 0.85810 0.94604 1.21208 1.04373 0.94489 1.04503 1.20675 0.93530 0.97349 0.96479 1.20855 1.01558 0.98772 0.98759 1.17392 0.87642 0.94663 0.91153 1.43196 1.30310 1.14523 1.41736 1.20839 0.84367 0.83602 0.82097 1.90767 1.68117 1.29862 1.48064 1.19670 0.83996 0.85694 0.82948 1.90727 1.69637 1.30415 1.50692 1.46140 1.28412 1.10045 1.46317 1.19326 0.80091 0.99142 0.88255 0.92775 1.22469 0.99305 0.99492 1.00840 1.20995 1.14705 0.93414 1.28588 0.89839 1.24827 0.96963 0.95712 0.94944 1.69863 1.30505 1.21142 1.30932 0.86879 0.81364 0.83208 0.77066 1.20182 1.18629 1.21997 1.20489 0.94415 1.00555 1.02072 0.88287 0.87388 0.86062 0.91446 0.90950 0.85512 0.85267 0.85210 0.73650 0.75502 0.92418 0.94357 0.93021 0.92139 0.83234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 14.31 29.01 0.42 -0.59 16 2 C -0.15 -1.16 9.89 -36.03 -0.36 -1.51 16 3 C 0.09 0.70 5.15 36.00 0.19 0.89 16 4 O -0.31 -3.69 10.12 -19.45 -0.20 -3.89 16 5 C 0.15 1.80 6.68 -39.25 -0.26 1.54 16 6 C -0.23 -2.16 9.04 -39.39 -0.36 -2.52 16 7 C -0.06 -0.54 10.03 -39.63 -0.40 -0.94 16 8 C -0.18 -1.80 9.96 -39.35 -0.39 -2.19 16 9 C 0.19 2.37 6.29 -83.77 -0.53 1.85 16 10 N -0.65 -8.65 5.32 -10.31 -0.05 -8.70 16 11 C 0.51 8.33 7.73 -11.63 -0.09 8.24 16 12 O -0.50 -8.92 13.91 5.48 0.08 -8.84 16 13 C 0.50 9.37 7.85 -11.63 -0.09 9.28 16 14 O -0.54 -10.89 16.14 5.49 0.09 -10.81 16 15 N -0.66 -13.46 5.06 -55.39 -0.28 -13.74 16 16 C 0.23 5.49 2.15 -69.08 -0.15 5.35 16 17 H 0.05 1.36 6.63 -51.93 -0.34 1.01 16 18 C -0.16 -3.54 8.96 37.16 0.33 -3.21 16 19 C -0.54 -14.48 9.31 -34.44 -0.32 -14.80 16 20 H 0.08 2.39 7.98 -52.49 -0.42 1.97 16 21 C 0.08 2.21 5.45 -17.81 -0.10 2.11 16 22 N -0.89 -26.10 13.96 55.43 0.77 -25.32 16 23 Si 0.89 21.22 24.37 -169.99 -4.14 17.07 16 24 H -0.28 -6.37 6.88 56.52 0.39 -5.98 16 25 H -0.26 -6.14 6.52 56.52 0.37 -5.77 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 C -0.15 -2.16 8.63 -39.23 -0.34 -2.50 16 28 H 0.10 0.46 7.90 -52.48 -0.41 0.05 16 29 H 0.11 0.50 8.06 -52.49 -0.42 0.08 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.07 0.44 7.38 -51.93 -0.38 0.06 16 32 H 0.07 0.50 7.66 -51.93 -0.40 0.10 16 33 H 0.13 0.89 6.29 -52.48 -0.33 0.56 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.43 4.84 8.30 -40.82 -0.34 4.50 16 37 H 0.41 7.95 8.01 -40.82 -0.33 7.62 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 1.15 3.28 -51.93 -0.17 0.98 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.15 2.39 6.22 -52.49 -0.33 2.06 16 LS Contribution 357.30 15.07 5.38 5.38 Total: -1.00 -31.65 357.30 -5.97 -37.61 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.17 Total: 10.24 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.44 Total: 0.99 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.44 Total: -47.77 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.03 Total: -23.54 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.14 Total: 17.07 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.65 -5.97 -37.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122894436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.579 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds