Wall clock time and date at job start Tue Mar 31 2020 12:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 120.00129 * 2 1 4 4 O 1.42896 * 109.47164 * 135.00114 * 3 2 1 5 5 C 1.35907 * 117.00226 * 179.97438 * 4 3 2 6 6 C 1.38810 * 120.01314 * 0.02562 * 5 4 3 7 7 C 1.38185 * 120.09260 * 179.97438 * 6 5 4 8 8 C 1.38153 * 120.13096 * 359.68720 * 7 6 5 9 9 C 1.38946 * 120.03019 * 0.58816 * 8 7 6 10 10 N 1.39721 * 120.04504 * 179.70391 * 9 8 7 11 11 C 1.34782 * 119.99670 * 214.83277 * 10 9 8 12 12 O 1.21368 * 120.00229 * 355.38006 * 11 10 9 13 13 C 1.49353 * 119.99553 * 175.38366 * 11 10 9 14 14 O 1.21358 * 120.00572 * 359.97438 * 13 11 10 15 15 N 1.34778 * 119.99649 * 179.97438 * 13 11 10 16 16 C 1.46505 * 119.99919 * 179.97438 * 15 13 11 17 17 H 1.09000 * 109.46565 * 35.00428 * 16 15 13 18 18 C 1.52998 * 109.47038 * 275.00410 * 16 15 13 19 19 C 1.50698 * 109.46772 * 155.00138 * 16 15 13 20 20 H 1.07993 * 120.00489 * 0.02562 * 19 16 15 21 21 C 1.37888 * 119.99538 * 179.97438 * 19 16 15 22 22 N 1.31516 * 119.99598 * 179.72552 * 21 19 16 23 23 Si 1.86799 * 120.00036 * 0.02562 * 21 19 16 24 24 H 1.48499 * 109.47002 * 269.72256 * 23 21 19 25 25 H 1.48502 * 109.47291 * 29.71985 * 23 21 19 26 26 H 1.48500 * 109.47093 * 149.72266 * 23 21 19 27 27 C 1.38565 * 120.01792 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.99433 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.00047 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99914 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47269 * 14.99831 * 3 2 1 32 32 H 1.08997 * 109.47287 * 254.99762 * 3 2 1 33 33 H 1.08003 * 119.95833 * 359.97438 * 6 5 4 34 34 H 1.07998 * 119.93427 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.98270 * 180.29682 * 8 7 6 36 36 H 0.97001 * 120.00278 * 34.83083 * 10 9 8 37 37 H 0.97001 * 120.00350 * 0.02562 * 15 13 11 38 38 H 1.09000 * 109.47488 * 300.00027 * 18 16 15 39 39 H 1.09000 * 109.47103 * 59.99910 * 18 16 15 40 40 H 1.09002 * 109.47291 * 179.97438 * 18 16 15 41 41 H 0.96994 * 119.99346 * 180.28020 * 22 21 19 42 42 H 1.08002 * 120.06723 * 0.04171 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9098 2.3449 1.0782 6 6 3.6588 3.4665 0.3000 7 6 4.4537 4.5898 0.4267 8 6 5.4966 4.6027 1.3326 9 6 5.7562 3.4808 2.1101 10 7 6.8148 3.4914 3.0220 11 6 7.5214 2.3659 3.2473 12 8 7.1867 1.3240 2.7225 13 6 8.7162 2.4011 4.1427 14 8 9.0511 3.4430 4.6671 15 7 9.4225 1.2756 4.3684 16 6 10.5948 1.3101 5.2463 17 1 10.4217 2.0193 6.0558 18 6 11.8218 1.7439 4.4418 19 6 10.8313 -0.0621 5.8226 20 1 10.1744 -0.8783 5.5608 21 6 11.8871 -0.2756 6.6834 22 7 12.0903 -1.4719 7.1906 23 14 13.0238 1.1360 7.1357 24 1 14.1519 1.1915 6.1716 25 1 12.2689 2.4140 7.0883 26 1 13.5541 0.9248 8.5065 27 6 4.9585 2.3513 1.9838 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3856 2.1160 0.2659 32 1 2.4756 1.4867 -0.9926 33 1 2.8411 3.4615 -0.4056 34 1 4.2563 5.4609 -0.1804 35 1 6.1134 5.4836 1.4330 36 1 7.0412 4.3086 3.4929 37 1 9.1550 0.4428 3.9490 38 1 11.9949 1.0348 3.6323 39 1 11.6506 2.7364 4.0250 40 1 12.6940 1.7701 5.0951 41 1 12.8306 -1.6212 7.7993 42 1 5.1552 1.4795 2.5902 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122894436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:29 Heat of formation + Delta-G solvation = -69.222858 kcal Electronic energy + Delta-G solvation = -25326.229165 eV Core-core repulsion = 21465.048711 eV Total energy + Delta-G solvation = -3861.180454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20905 -41.05861 -39.97406 -38.53839 -37.16440 -35.83463 -34.92034 -34.42294 -31.95841 -31.48913 -30.49585 -27.57482 -27.29156 -26.40741 -24.10442 -23.20302 -22.31222 -21.39526 -20.85871 -20.28393 -19.39697 -18.50991 -17.86103 -17.55523 -17.16931 -17.11022 -16.95799 -16.85405 -16.51835 -15.94275 -15.51502 -15.20459 -14.97451 -14.84749 -14.54322 -14.36564 -14.15491 -13.92845 -13.76696 -13.58124 -13.28877 -12.99727 -12.79019 -12.73860 -12.51975 -12.27139 -12.15906 -11.83122 -11.58016 -11.37327 -11.35044 -10.90769 -10.69816 -10.45555 -10.15280 -9.54733 -9.12660 -8.39249 -6.47964 -0.11350 0.41715 0.53171 1.09811 1.23942 1.29997 1.37478 1.46966 2.04026 2.25910 2.31482 2.68219 2.75226 2.96083 3.36424 3.79297 3.93446 4.03349 4.12828 4.21395 4.24643 4.35919 4.38113 4.49276 4.50253 4.51902 4.61359 4.63742 4.90644 4.95519 5.14288 5.18781 5.20710 5.28612 5.31726 5.42808 5.43632 5.60253 5.63096 5.74545 5.86025 6.08603 6.43670 6.45007 6.54262 6.67764 6.90078 7.19296 8.76210 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.002464 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.092318 B =11361.110164 C =12506.694137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.183 4.183 3 C 0.082 3.918 4 O -0.335 6.335 5 C 0.133 3.867 6 C -0.216 4.216 7 C -0.052 4.052 8 C -0.172 4.172 9 C 0.163 3.837 10 N -0.632 5.632 11 C 0.515 3.485 12 O -0.518 6.518 13 C 0.503 3.497 14 O -0.548 6.548 15 N -0.667 5.667 16 C 0.240 3.760 17 H 0.041 0.959 18 C -0.158 4.158 19 C -0.542 4.542 20 H 0.051 0.949 21 C 0.027 3.973 22 N -0.933 5.933 23 Si 0.944 3.056 24 H -0.257 1.257 25 H -0.252 1.252 26 H -0.292 1.292 27 C -0.185 4.185 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.156 0.844 36 H 0.434 0.566 37 H 0.412 0.588 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.272 0.728 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.887 13.975 -17.539 30.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.202 4.202 3 C 0.008 3.992 4 O -0.250 6.250 5 C 0.087 3.913 6 C -0.235 4.235 7 C -0.071 4.071 8 C -0.192 4.192 9 C 0.069 3.931 10 N -0.280 5.280 11 C 0.297 3.703 12 O -0.392 6.392 13 C 0.283 3.717 14 O -0.427 6.427 15 N -0.317 5.317 16 C 0.136 3.864 17 H 0.059 0.941 18 C -0.216 4.216 19 C -0.580 4.580 20 H 0.069 0.931 21 C -0.173 4.173 22 N -0.572 5.572 23 Si 0.770 3.230 24 H -0.183 1.183 25 H -0.177 1.177 26 H -0.219 1.219 27 C -0.206 4.206 28 H 0.133 0.867 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.175 0.825 34 H 0.188 0.812 35 H 0.174 0.826 36 H 0.275 0.725 37 H 0.248 0.752 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.695 13.633 -17.285 30.214 hybrid contribution 0.754 -0.322 0.629 1.033 sum -19.941 13.311 -16.655 29.193 Atomic orbital electron populations 1.24116 0.94765 1.03871 0.96456 1.22718 0.96404 0.97517 1.03512 1.22083 0.87308 0.97713 0.92090 1.86097 1.42985 1.36151 1.59717 1.18854 0.90590 0.86911 0.94972 1.21588 1.04832 0.93425 1.03660 1.21185 0.92030 0.98173 0.95685 1.21195 1.01937 0.98284 0.97756 1.17591 0.87645 0.95598 0.92230 1.43015 1.29777 1.13686 1.41493 1.20271 0.83943 0.84307 0.81798 1.90778 1.68570 1.30826 1.49054 1.19974 0.84235 0.84809 0.82662 1.90708 1.70121 1.30683 1.51183 1.45992 1.28312 1.10941 1.46424 1.19044 0.82055 0.96512 0.88788 0.94125 1.22369 0.97915 1.00639 1.00652 1.21198 1.13934 0.94321 1.28567 0.93084 1.25650 0.98656 0.98113 0.94867 1.69990 1.31639 1.23398 1.32134 0.85923 0.79789 0.80196 0.77055 1.18270 1.17664 1.21924 1.20408 0.96487 1.00280 1.03390 0.86669 0.86336 0.87263 0.89615 0.89762 0.82522 0.81190 0.82621 0.72519 0.75217 0.91772 0.92548 0.93297 0.91886 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 14.31 67.78 0.97 -0.58 16 2 C -0.18 -2.65 9.89 25.64 0.25 -2.40 16 3 C 0.08 1.23 5.15 71.23 0.37 1.59 16 4 O -0.34 -8.16 10.12 -92.51 -0.94 -9.10 16 5 C 0.13 3.18 6.68 22.48 0.15 3.33 16 6 C -0.22 -3.47 9.04 22.39 0.20 -3.27 16 7 C -0.05 -0.70 10.03 22.24 0.22 -0.48 16 8 C -0.17 -2.92 9.96 22.42 0.22 -2.70 16 9 C 0.16 4.03 6.29 38.20 0.24 4.27 16 10 N -0.63 -16.49 5.32 -304.89 -1.62 -18.11 16 11 C 0.51 17.11 7.73 87.24 0.67 17.79 16 12 O -0.52 -19.44 13.91 -3.30 -0.05 -19.49 16 13 C 0.50 18.96 7.85 87.24 0.68 19.65 16 14 O -0.55 -21.84 16.14 -3.27 -0.05 -21.89 16 15 N -0.67 -27.67 5.06 -447.52 -2.27 -29.93 16 16 C 0.24 11.25 2.15 44.24 0.10 11.35 16 17 H 0.04 2.03 6.63 -2.39 -0.02 2.02 16 18 C -0.16 -6.63 8.96 71.98 0.64 -5.98 16 19 C -0.54 -29.91 9.31 25.60 0.24 -29.68 16 20 H 0.05 3.07 7.98 -2.91 -0.02 3.05 16 21 C 0.03 1.53 5.45 84.66 0.46 1.99 16 22 N -0.93 -56.25 13.96 21.45 0.30 -55.95 16 23 Si 0.94 43.44 24.37 68.60 1.67 45.11 16 24 H -0.26 -11.05 6.88 99.48 0.68 -10.37 16 25 H -0.25 -11.17 6.52 99.48 0.65 -10.52 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 27 C -0.18 -5.32 8.63 22.50 0.19 -5.13 16 28 H 0.12 0.76 7.90 -2.91 -0.02 0.74 16 29 H 0.12 0.90 8.06 -2.91 -0.02 0.88 16 30 H 0.11 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.09 0.92 7.38 -2.39 -0.02 0.90 16 32 H 0.08 1.00 7.66 -2.39 -0.02 0.98 16 33 H 0.16 1.52 6.29 -2.91 -0.02 1.50 16 34 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 35 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.43 9.35 8.30 -92.71 -0.77 8.58 16 37 H 0.41 16.66 8.01 -92.71 -0.74 15.91 16 38 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.05 2.07 3.28 -2.39 -0.01 2.06 16 41 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 42 H 0.12 4.06 6.22 -2.91 -0.02 4.04 16 Total: -1.00 -70.93 357.30 2.15 -68.77 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: -0.52 Total: 30.83 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 5.62 Total: 9.76 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -3.59 Total: -104.00 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -1.03 Total: -50.48 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.67 Total: 45.11 kcal Total: -70.93 2.15 -68.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122894436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.453 kcal (2) G-P(sol) polarization free energy of solvation -70.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds