Wall clock time and date at job start Tue Mar 31 2020 13:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46492 * 109.47449 * 2 1 4 4 C 1.46507 * 119.99957 * 274.46217 * 3 2 1 5 5 C 1.50698 * 109.47312 * 264.95890 * 4 3 2 6 6 H 1.08001 * 119.99951 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99729 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99704 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00301 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47375 * 89.99499 * 9 7 5 11 11 H 1.48503 * 109.47101 * 209.99859 * 9 7 5 12 12 H 1.48499 * 109.47008 * 329.99396 * 9 7 5 13 13 C 1.34778 * 120.00353 * 94.46273 * 3 2 1 14 14 O 1.21356 * 120.00030 * 354.63424 * 13 3 2 15 15 C 1.49360 * 119.99898 * 174.63354 * 13 3 2 16 16 O 1.21376 * 119.99950 * 354.43392 * 15 13 3 17 17 N 1.34775 * 119.99537 * 174.44128 * 15 13 3 18 18 C 1.39766 * 119.99535 * 184.99740 * 17 15 13 19 19 C 1.39081 * 119.99050 * 215.13944 * 18 17 15 20 20 C 1.38237 * 120.27561 * 180.02562 * 19 18 17 21 21 C 1.37961 * 120.25618 * 0.02562 * 20 19 18 22 22 C 1.39858 * 119.97756 * 0.02562 * 21 20 19 23 23 C 1.47185 * 120.13452 * 180.02562 * 22 21 20 24 24 C 1.50697 * 120.00292 * 359.97438 * 23 22 21 25 25 O 1.21254 * 120.00106 * 179.97438 * 23 22 21 26 26 C 1.38582 * 119.99120 * 35.16758 * 18 17 15 27 27 H 1.09006 * 109.47565 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47415 * 300.00567 * 1 2 3 29 29 H 1.08995 * 109.47262 * 60.00499 * 1 2 3 30 30 H 1.09004 * 109.47415 * 239.99433 * 2 1 3 31 31 H 1.09007 * 109.46937 * 119.99712 * 2 1 3 32 32 H 1.09002 * 109.46752 * 24.95926 * 4 3 2 33 33 H 1.08997 * 109.46898 * 144.95146 * 4 3 2 34 34 H 0.97001 * 120.00426 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00291 * 4.99944 * 17 15 13 36 36 H 1.08004 * 119.86663 * 0.02562 * 19 18 17 37 37 H 1.08005 * 119.87477 * 179.97438 * 20 19 18 38 38 H 1.08007 * 120.01400 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.47457 * 89.99884 * 24 23 22 40 40 H 1.09002 * 109.47124 * 210.00098 * 24 23 22 41 41 H 1.09002 * 109.47025 * 329.99927 * 24 23 22 42 42 H 1.08003 * 120.13139 * 0.24453 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1695 2.1046 -1.2649 5 6 3.5922 1.9826 -1.7466 6 1 4.3120 1.4226 -1.1681 7 6 3.9749 2.5861 -2.9257 8 7 5.2166 2.4800 -3.3458 9 14 2.7302 3.5553 -3.9259 10 1 2.7388 4.9738 -3.4866 11 1 3.0862 3.4809 -5.3657 12 1 1.3759 2.9818 -3.7207 13 6 2.3286 1.9862 1.1636 14 8 2.1122 1.4235 2.2168 15 6 2.9388 3.3495 1.1569 16 8 3.2484 3.8706 0.1054 17 7 3.1458 4.0008 2.3186 18 6 3.6190 5.3158 2.3076 19 6 4.4888 5.7500 3.3023 20 6 4.9601 7.0495 3.2975 21 6 4.5708 7.9265 2.3061 22 6 3.6957 7.5015 1.3013 23 6 3.2786 8.4340 0.2417 24 6 3.7941 9.8500 0.2382 25 8 2.5202 8.0628 -0.6286 26 6 3.2210 6.1870 1.3060 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.4961 1.6795 -2.0093 33 1 1.9260 3.1562 -1.1133 34 1 5.4861 2.9048 -4.1752 35 1 2.9664 3.5568 3.1622 36 1 4.7974 5.0690 4.0817 37 1 5.6349 7.3799 4.0733 38 1 4.9417 8.9408 2.3059 39 1 4.7195 9.8985 -0.3358 40 1 3.0509 10.5061 -0.2148 41 1 3.9849 10.1697 1.2627 42 1 2.5422 5.8530 0.5352 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124004522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:45 Heat of formation + Delta-G solvation = -57.064591 kcal Electronic energy + Delta-G solvation = -26946.198782 eV Core-core repulsion = 23085.545550 eV Total energy + Delta-G solvation = -3860.653232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75728 -39.74985 -38.62500 -37.52240 -35.87034 -34.41063 -32.56075 -31.64798 -30.73314 -30.44442 -28.97864 -27.70159 -25.08428 -23.87459 -22.96153 -22.60597 -21.27928 -19.84169 -19.23220 -17.58917 -17.07731 -16.95048 -16.46809 -15.92963 -15.70948 -15.22378 -15.16831 -14.98410 -14.83218 -14.23678 -13.96663 -13.86983 -13.61452 -13.39371 -13.17108 -12.72090 -12.52271 -12.45433 -12.19449 -12.13959 -11.98719 -11.88505 -11.76196 -11.48557 -11.02240 -10.74644 -10.65886 -10.46646 -10.20674 -10.16289 -9.73982 -9.50171 -9.04961 -8.76204 -8.49518 -8.14598 -7.94275 -6.03274 -4.00282 0.64068 1.26425 2.01507 2.44333 2.75685 3.35785 3.39721 3.47743 3.64270 3.87132 3.91521 4.09321 4.46895 4.74264 4.85244 4.89706 4.97565 5.06888 5.25564 5.30695 5.30935 5.42890 5.43798 5.54042 5.58771 5.70204 5.76829 5.86839 6.07948 6.17928 6.22047 6.27195 6.31229 6.42912 6.45082 6.46437 6.82274 6.96841 7.10604 7.39687 7.56287 7.59037 7.85502 8.17994 8.46692 8.58037 8.96494 9.57354 11.10137 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010783 B = 0.005272 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.937089 B = 5309.890854 C = 6929.525668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.111 3.889 3 N -0.554 5.554 4 C 0.201 3.799 5 C -0.513 4.513 6 H 0.072 0.928 7 C 0.081 3.919 8 N -0.897 5.897 9 Si 0.869 3.131 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.511 3.489 14 O -0.555 6.555 15 C 0.487 3.513 16 O -0.428 6.428 17 N -0.664 5.664 18 C 0.150 3.850 19 C -0.116 4.116 20 C -0.113 4.113 21 C -0.096 4.096 22 C -0.152 4.152 23 C 0.390 3.610 24 C -0.198 4.198 25 O -0.448 6.448 26 C -0.063 4.063 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.051 0.949 34 H 0.263 0.737 35 H 0.418 0.582 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.717 9.607 13.542 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.284 5.284 4 C 0.081 3.919 5 C -0.551 4.551 6 H 0.090 0.910 7 C -0.121 4.121 8 N -0.536 5.536 9 Si 0.696 3.304 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.294 3.706 14 O -0.436 6.436 15 C 0.268 3.732 16 O -0.295 6.295 17 N -0.313 5.313 18 C 0.055 3.945 19 C -0.137 4.137 20 C -0.132 4.132 21 C -0.115 4.115 22 C -0.154 4.154 23 C 0.267 3.733 24 C -0.254 4.254 25 O -0.323 6.323 26 C -0.083 4.083 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.255 0.745 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.938 9.459 12.575 16.221 hybrid contribution -0.310 0.270 -0.225 0.468 sum -4.248 9.729 12.350 16.286 Atomic orbital electron populations 1.22119 0.96169 1.01804 1.02198 1.21475 0.93884 0.82322 1.03513 1.47950 1.59360 1.13594 1.07454 1.20259 0.98880 0.92893 0.79898 1.21032 0.93394 1.33636 1.07029 0.90992 1.24703 0.94974 0.95279 0.97150 1.69883 1.16588 1.44551 1.22571 0.86956 0.81984 0.81981 0.79432 1.19438 1.21276 1.19231 1.19685 0.79972 0.86474 0.84505 1.90656 1.55584 1.66579 1.30823 1.20465 0.81074 0.87656 0.83984 1.91021 1.43069 1.66279 1.29101 1.43251 1.65994 1.11829 1.10248 1.17620 0.95866 0.84093 0.96899 1.21175 0.95893 0.97121 0.99505 1.20863 1.00328 0.92941 0.99048 1.21372 0.96578 1.00003 0.93564 1.20375 1.01737 0.94991 0.98273 1.22510 0.78459 0.89699 0.82628 1.22218 1.03906 0.94843 1.04480 1.90597 1.28291 1.78974 1.34389 1.21464 0.97971 0.91092 0.97806 0.91781 0.92601 0.92393 0.89590 0.90208 0.95019 0.93153 0.92685 0.74496 0.85104 0.85062 0.85009 0.88422 0.89530 0.89558 0.83715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 10.24 37.15 0.38 -2.00 16 2 C 0.11 1.92 6.12 -4.05 -0.02 1.89 16 3 N -0.55 -11.60 2.47 -175.61 -0.43 -12.04 16 4 C 0.20 4.80 3.84 -5.19 -0.02 4.78 16 5 C -0.51 -14.48 8.29 -34.44 -0.29 -14.76 16 6 H 0.07 2.25 8.06 -52.49 -0.42 1.82 16 7 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 8 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 9 Si 0.87 22.27 27.47 -169.99 -4.67 17.60 16 10 H -0.27 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 13 C 0.51 10.51 7.68 -11.63 -0.09 10.42 16 14 O -0.56 -11.18 16.05 5.49 0.09 -11.10 16 15 C 0.49 9.89 7.42 -11.63 -0.09 9.81 16 16 O -0.43 -10.29 9.96 5.47 0.05 -10.23 16 17 N -0.66 -10.68 5.32 -10.33 -0.05 -10.73 16 18 C 0.15 2.30 6.24 -83.80 -0.52 1.78 16 19 C -0.12 -1.36 9.96 -39.27 -0.39 -1.76 16 20 C -0.11 -1.12 10.02 -39.68 -0.40 -1.52 16 21 C -0.10 -1.01 9.36 -39.08 -0.37 -1.38 16 22 C -0.15 -2.17 5.87 -105.09 -0.62 -2.79 16 23 C 0.39 5.61 7.23 -30.68 -0.22 5.39 16 24 C -0.20 -1.77 9.75 36.00 0.35 -1.42 16 25 O -0.45 -8.56 17.09 5.58 0.10 -8.47 16 26 C -0.06 -1.08 8.19 -38.89 -0.32 -1.40 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 31 H 0.08 1.34 7.37 -51.93 -0.38 0.96 16 32 H 0.03 0.74 7.09 -51.93 -0.37 0.37 16 33 H 0.05 1.26 5.35 -51.93 -0.28 0.98 16 34 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 35 H 0.42 5.60 8.30 -40.82 -0.34 5.26 16 36 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 38 H 0.13 0.91 6.35 -52.48 -0.33 0.58 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.52 6.47 -51.93 -0.34 0.19 16 42 H 0.15 2.93 6.14 -52.48 -0.32 2.61 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -35.92 357.09 -6.80 -42.72 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.33 Total: 4.68 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -2.71 Total: 9.35 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.29 Total: -49.92 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: 0.24 Total: -29.80 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.92 -6.80 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124004522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.349 kcal (2) G-P(sol) polarization free energy of solvation -35.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds