Wall clock time and date at job start Tue Mar 31 2020 13:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46492 * 109.47449 * 2 1 4 4 C 1.46507 * 119.99957 * 274.46217 * 3 2 1 5 5 C 1.50698 * 109.47312 * 264.95890 * 4 3 2 6 6 H 1.08001 * 119.99951 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99729 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99704 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00301 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47375 * 89.99499 * 9 7 5 11 11 H 1.48503 * 109.47101 * 209.99859 * 9 7 5 12 12 H 1.48499 * 109.47008 * 329.99396 * 9 7 5 13 13 C 1.34778 * 120.00353 * 94.46273 * 3 2 1 14 14 O 1.21356 * 120.00030 * 354.63424 * 13 3 2 15 15 C 1.49360 * 119.99898 * 174.63354 * 13 3 2 16 16 O 1.21376 * 119.99950 * 354.43392 * 15 13 3 17 17 N 1.34775 * 119.99537 * 174.44128 * 15 13 3 18 18 C 1.39766 * 119.99535 * 184.99740 * 17 15 13 19 19 C 1.39081 * 119.99050 * 215.13944 * 18 17 15 20 20 C 1.38237 * 120.27561 * 180.02562 * 19 18 17 21 21 C 1.37961 * 120.25618 * 0.02562 * 20 19 18 22 22 C 1.39858 * 119.97756 * 0.02562 * 21 20 19 23 23 C 1.47185 * 120.13452 * 180.02562 * 22 21 20 24 24 C 1.50697 * 120.00292 * 359.97438 * 23 22 21 25 25 O 1.21254 * 120.00106 * 179.97438 * 23 22 21 26 26 C 1.38582 * 119.99120 * 35.16758 * 18 17 15 27 27 H 1.09006 * 109.47565 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47415 * 300.00567 * 1 2 3 29 29 H 1.08995 * 109.47262 * 60.00499 * 1 2 3 30 30 H 1.09004 * 109.47415 * 239.99433 * 2 1 3 31 31 H 1.09007 * 109.46937 * 119.99712 * 2 1 3 32 32 H 1.09002 * 109.46752 * 24.95926 * 4 3 2 33 33 H 1.08997 * 109.46898 * 144.95146 * 4 3 2 34 34 H 0.97001 * 120.00426 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00291 * 4.99944 * 17 15 13 36 36 H 1.08004 * 119.86663 * 0.02562 * 19 18 17 37 37 H 1.08005 * 119.87477 * 179.97438 * 20 19 18 38 38 H 1.08007 * 120.01400 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.47457 * 89.99884 * 24 23 22 40 40 H 1.09002 * 109.47124 * 210.00098 * 24 23 22 41 41 H 1.09002 * 109.47025 * 329.99927 * 24 23 22 42 42 H 1.08003 * 120.13139 * 0.24453 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1695 2.1046 -1.2649 5 6 3.5922 1.9826 -1.7466 6 1 4.3120 1.4226 -1.1681 7 6 3.9749 2.5861 -2.9257 8 7 5.2166 2.4800 -3.3458 9 14 2.7302 3.5553 -3.9259 10 1 2.7388 4.9738 -3.4866 11 1 3.0862 3.4809 -5.3657 12 1 1.3759 2.9818 -3.7207 13 6 2.3286 1.9862 1.1636 14 8 2.1122 1.4235 2.2168 15 6 2.9388 3.3495 1.1569 16 8 3.2484 3.8706 0.1054 17 7 3.1458 4.0008 2.3186 18 6 3.6190 5.3158 2.3076 19 6 4.4888 5.7500 3.3023 20 6 4.9601 7.0495 3.2975 21 6 4.5708 7.9265 2.3061 22 6 3.6957 7.5015 1.3013 23 6 3.2786 8.4340 0.2417 24 6 3.7941 9.8500 0.2382 25 8 2.5202 8.0628 -0.6286 26 6 3.2210 6.1870 1.3060 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.4961 1.6795 -2.0093 33 1 1.9260 3.1562 -1.1133 34 1 5.4861 2.9048 -4.1752 35 1 2.9664 3.5568 3.1622 36 1 4.7974 5.0690 4.0817 37 1 5.6349 7.3799 4.0733 38 1 4.9417 8.9408 2.3059 39 1 4.7195 9.8985 -0.3358 40 1 3.0509 10.5061 -0.2148 41 1 3.9849 10.1697 1.2627 42 1 2.5422 5.8530 0.5352 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124004522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:44 Heat of formation + Delta-G solvation = -82.999858 kcal Electronic energy + Delta-G solvation = -26947.323419 eV Core-core repulsion = 23085.545550 eV Total energy + Delta-G solvation = -3861.777870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.19965 -41.00546 -40.00157 -38.87341 -37.49398 -35.78659 -34.70736 -32.67483 -32.27152 -31.49617 -30.00515 -29.61478 -26.51617 -24.89821 -24.68490 -24.11599 -22.54698 -21.04882 -20.67389 -19.18434 -18.93304 -18.46648 -17.89663 -17.22289 -16.97683 -16.72917 -16.45542 -16.34644 -16.06372 -15.92127 -15.42496 -15.25769 -14.86037 -14.78404 -14.58042 -14.42587 -13.96672 -13.79608 -13.53083 -13.29092 -13.24276 -13.06414 -12.81928 -12.78365 -12.66543 -12.49593 -12.25617 -12.14557 -11.92338 -11.72211 -11.50445 -10.84256 -10.80547 -10.42679 -10.00433 -9.72004 -9.27708 -8.31598 -6.30990 -0.39936 0.05536 0.59312 1.24626 1.31074 1.36847 1.37346 1.40974 2.12860 2.30400 2.45006 2.80094 3.04035 3.06617 3.32751 3.86609 4.00792 4.07129 4.09927 4.23514 4.28764 4.36799 4.42648 4.44168 4.59745 4.62766 4.66303 4.81464 4.86787 4.88698 4.95789 5.07383 5.21031 5.24602 5.28511 5.32494 5.38706 5.42295 5.47272 5.89879 5.98955 6.05573 6.31647 6.51882 6.64187 6.69861 6.97005 7.29607 8.85671 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010783 B = 0.005272 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.937089 B = 5309.890854 C = 6929.525668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.102 3.898 3 N -0.562 5.562 4 C 0.215 3.785 5 C -0.500 4.500 6 H 0.030 0.970 7 C 0.026 3.974 8 N -0.945 5.945 9 Si 0.929 3.071 10 H -0.291 1.291 11 H -0.276 1.276 12 H -0.236 1.236 13 C 0.508 3.492 14 O -0.551 6.551 15 C 0.483 3.517 16 O -0.478 6.478 17 N -0.645 5.645 18 C 0.115 3.885 19 C -0.104 4.104 20 C -0.102 4.102 21 C -0.071 4.071 22 C -0.178 4.178 23 C 0.383 3.617 24 C -0.188 4.188 25 O -0.516 6.516 26 C -0.099 4.099 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.430 0.570 36 H 0.161 0.839 37 H 0.182 0.818 38 H 0.181 0.819 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 11.327 16.098 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 N -0.292 5.292 4 C 0.093 3.907 5 C -0.539 4.539 6 H 0.048 0.952 7 C -0.172 4.172 8 N -0.586 5.586 9 Si 0.753 3.247 10 H -0.217 1.217 11 H -0.201 1.201 12 H -0.159 1.159 13 C 0.290 3.710 14 O -0.432 6.432 15 C 0.265 3.735 16 O -0.349 6.349 17 N -0.295 5.295 18 C 0.022 3.978 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.089 4.089 22 C -0.180 4.180 23 C 0.265 3.735 24 C -0.244 4.244 25 O -0.395 6.395 26 C -0.120 4.120 27 H 0.115 0.885 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.269 0.731 36 H 0.179 0.821 37 H 0.200 0.800 38 H 0.198 0.802 39 H 0.131 0.869 40 H 0.109 0.891 41 H 0.145 0.855 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.768 11.163 15.215 19.243 hybrid contribution -0.256 -0.229 -0.780 0.853 sum -4.024 10.934 14.435 18.550 Atomic orbital electron populations 1.22049 0.93522 1.03837 1.01823 1.21758 0.96046 0.80327 1.03759 1.47997 1.59835 1.14886 1.06489 1.19899 0.96281 0.93061 0.81473 1.21157 0.94736 1.31930 1.06086 0.95208 1.25477 0.96683 0.96450 0.98608 1.70013 1.18664 1.46438 1.23466 0.86007 0.81332 0.79159 0.78165 1.21732 1.20099 1.15926 1.19824 0.79855 0.86724 0.84568 1.90637 1.55477 1.66623 1.30420 1.20575 0.80762 0.87598 0.84609 1.91004 1.45693 1.67274 1.30886 1.43055 1.64783 1.12231 1.09388 1.17897 0.98242 0.83227 0.98439 1.21614 0.93811 0.98696 0.98282 1.21502 0.99524 0.91547 0.99419 1.21932 0.93517 1.02216 0.91249 1.20656 1.03310 0.93981 1.00023 1.23505 0.76769 0.92030 0.81225 1.22267 1.04178 0.90562 1.07377 1.90573 1.31590 1.80503 1.36867 1.21316 0.99215 0.93476 0.97979 0.88510 0.93093 0.92588 0.89563 0.89777 0.93346 0.94082 0.92643 0.73062 0.82131 0.80028 0.80174 0.86862 0.89135 0.85513 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 10.24 71.98 0.74 -3.47 16 2 C 0.10 3.50 6.12 86.38 0.53 4.03 16 3 N -0.56 -24.08 2.47 -827.85 -2.04 -26.12 16 4 C 0.21 10.54 3.84 85.63 0.33 10.87 16 5 C -0.50 -29.55 8.29 25.60 0.21 -29.33 16 6 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 7 C 0.03 1.56 5.47 84.65 0.46 2.02 16 8 N -0.94 -61.33 13.96 21.45 0.30 -61.03 16 9 Si 0.93 47.54 27.47 68.60 1.88 49.42 16 10 H -0.29 -15.87 7.11 99.48 0.71 -15.16 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 12 H -0.24 -10.78 6.54 99.48 0.65 -10.12 16 13 C 0.51 21.49 7.68 87.24 0.67 22.16 16 14 O -0.55 -22.20 16.05 -3.26 -0.05 -22.25 16 15 C 0.48 20.75 7.42 87.24 0.65 21.39 16 16 O -0.48 -24.76 9.96 -3.33 -0.03 -24.79 16 17 N -0.64 -21.43 5.32 -304.95 -1.62 -23.05 16 18 C 0.12 3.59 6.24 38.16 0.24 3.83 16 19 C -0.10 -2.14 9.96 22.47 0.22 -1.92 16 20 C -0.10 -1.50 10.02 22.20 0.22 -1.28 16 21 C -0.07 -1.20 9.36 22.60 0.21 -0.98 16 22 C -0.18 -5.06 5.87 -20.17 -0.12 -5.18 16 23 C 0.38 11.23 7.23 28.04 0.20 11.44 16 24 C -0.19 -2.87 9.75 71.23 0.69 -2.18 16 25 O -0.52 -21.39 17.09 -2.95 -0.05 -21.44 16 26 C -0.10 -3.63 8.19 22.72 0.19 -3.44 16 27 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.09 2.92 8.11 -2.39 -0.02 2.90 16 31 H 0.08 2.79 7.37 -2.38 -0.02 2.77 16 32 H 0.05 2.23 7.09 -2.39 -0.02 2.21 16 33 H 0.04 2.15 5.35 -2.39 -0.01 2.14 16 34 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 35 H 0.43 11.52 8.30 -92.71 -0.77 10.75 16 36 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.18 1.26 6.35 -2.91 -0.02 1.24 16 39 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.13 0.87 6.47 -2.39 -0.02 0.85 16 42 H 0.10 4.40 6.14 -2.91 -0.02 4.38 16 Total: -1.00 -87.87 357.09 4.07 -83.80 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.24 Total: 17.51 kcal Atomic # 6 Polarization: 22.51 SS G_CDS: 5.45 Total: 27.96 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -3.37 Total: -110.20 kcal Atomic # 8 Polarization: -68.35 SS G_CDS: -0.14 Total: -68.49 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.88 Total: 49.42 kcal Total: -87.87 4.07 -83.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124004522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.799 kcal (2) G-P(sol) polarization free energy of solvation -87.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds