Wall clock time and date at job start Tue Mar 31 2020 13:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46866 * 2 1 4 4 C 1.46498 * 119.99707 * 274.68503 * 3 2 1 5 5 C 1.50707 * 109.47203 * 263.52638 * 4 3 2 6 6 H 1.07998 * 119.99366 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99939 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99669 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00108 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47030 * 89.99817 * 9 7 5 11 11 H 1.48503 * 109.46842 * 209.99821 * 9 7 5 12 12 H 1.48491 * 109.47073 * 329.99313 * 9 7 5 13 13 C 1.34776 * 120.00367 * 94.68274 * 3 2 1 14 14 O 1.21359 * 119.99414 * 354.52232 * 13 3 2 15 15 C 1.49351 * 120.00347 * 174.79558 * 13 3 2 16 16 O 1.21373 * 119.99851 * 1.38125 * 15 13 3 17 17 N 1.34775 * 119.99881 * 181.37946 * 15 13 3 18 18 C 1.39724 * 119.99437 * 185.05475 * 17 15 13 19 19 C 1.38959 * 120.06369 * 323.45893 * 18 17 15 20 20 C 1.38148 * 119.96665 * 179.70415 * 19 18 17 21 21 C 1.38057 * 120.01380 * 0.59964 * 20 19 18 22 22 C 1.38668 * 120.16366 * 359.67627 * 21 20 19 23 23 C 1.37836 * 120.11680 * 0.02562 * 22 21 20 24 24 C 1.51096 * 107.26341 * 180.02562 * 22 21 20 25 25 O 1.43931 * 105.95675 * 17.70611 * 24 22 21 26 26 C 1.43931 * 104.95880 * 331.51639 * 25 24 22 27 27 H 1.09004 * 109.47241 * 300.00054 * 1 2 3 28 28 H 1.08994 * 109.47473 * 60.00133 * 1 2 3 29 29 H 1.09003 * 109.46847 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47070 * 240.00557 * 2 1 3 31 31 H 1.09001 * 109.47147 * 119.99699 * 2 1 3 32 32 H 1.08999 * 109.47647 * 23.52872 * 4 3 2 33 33 H 1.09001 * 109.47116 * 143.52708 * 4 3 2 34 34 H 0.96999 * 120.00157 * 180.02562 * 8 7 5 35 35 H 0.96993 * 120.00350 * 5.05167 * 17 15 13 36 36 H 1.08005 * 120.01462 * 359.97438 * 19 18 17 37 37 H 1.07996 * 119.99170 * 180.28390 * 20 19 18 38 38 H 1.08001 * 120.07247 * 180.02562 * 23 22 21 39 39 H 1.09001 * 110.15595 * 136.83370 * 24 22 21 40 40 H 1.09007 * 110.15472 * 258.58179 * 24 22 21 41 41 H 1.09004 * 110.15689 * 147.60324 * 26 25 24 42 42 H 1.08998 * 110.16161 * 269.29123 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1647 2.1064 -1.2645 5 6 3.5940 2.0147 -1.7336 6 1 4.3204 1.4703 -1.1485 7 6 3.9738 2.6248 -2.9102 8 7 5.2211 2.5452 -3.3193 9 14 2.7171 3.5657 -3.9225 10 1 2.6913 4.9845 -3.4851 11 1 3.0872 3.4972 -5.3591 12 1 1.3738 2.9632 -3.7283 13 6 2.3328 1.9849 1.1633 14 8 2.1183 1.4215 2.2165 15 6 2.9394 3.3497 1.1563 16 8 3.1262 3.9254 0.1043 17 7 3.2795 3.9418 2.3183 18 6 3.7483 5.2581 2.3205 19 6 4.5584 5.7102 1.2860 20 6 5.0158 7.0138 1.2870 21 6 4.6784 7.8632 2.3217 22 6 3.8748 7.4135 3.3585 23 6 3.4101 6.1159 3.3604 24 6 3.6925 8.5670 4.3172 25 8 4.0530 9.7519 3.5838 26 6 5.0155 9.3077 2.6102 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.5073 1.6660 -2.0142 33 1 1.8973 3.1527 -1.1164 34 1 5.4885 2.9747 -4.1469 35 1 3.1988 3.4544 3.1529 36 1 4.8268 5.0441 0.4792 37 1 5.6417 7.3669 0.4808 38 1 2.7839 5.7665 4.1681 39 1 2.6530 8.6266 4.6397 40 1 4.3475 8.4455 5.1800 41 1 4.9311 9.9020 1.7003 42 1 6.0240 9.3851 3.0166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124073068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:28 Heat of formation + Delta-G solvation = -54.613252 kcal Electronic energy + Delta-G solvation = -26756.431321 eV Core-core repulsion = 22895.884388 eV Total energy + Delta-G solvation = -3860.546934 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.97531 -40.21552 -38.56258 -37.07149 -35.83351 -34.22504 -32.63496 -31.54391 -30.75516 -30.31545 -27.91877 -27.70090 -25.45280 -24.10433 -22.84261 -22.38565 -21.81763 -20.70892 -19.32926 -17.54180 -17.12901 -16.97077 -16.58530 -16.31678 -16.10751 -15.74690 -15.18467 -15.02196 -14.49960 -14.17198 -14.14224 -13.71678 -13.53362 -13.29900 -13.23011 -12.95222 -12.75993 -12.53187 -12.30025 -12.22442 -11.99418 -11.81581 -11.61311 -11.17490 -11.07531 -10.78205 -10.71519 -10.46337 -10.33241 -10.22257 -9.81506 -9.57258 -8.92586 -8.73271 -8.54124 -8.06234 -7.91155 -6.11040 -4.08644 1.13086 1.32850 2.00774 2.72329 3.28318 3.33062 3.36675 3.57344 3.78697 3.83077 3.89893 4.26803 4.38631 4.55070 4.78912 4.89943 5.17810 5.19262 5.23024 5.26089 5.38015 5.40812 5.45082 5.55347 5.60617 5.67020 5.71917 5.89546 6.04511 6.14606 6.20780 6.21795 6.38757 6.40517 6.42210 6.52260 6.63777 6.84257 7.02098 7.10634 7.39247 7.52428 7.82298 8.15261 8.40783 8.53809 8.88748 9.49391 11.02121 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.004203 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.037667 B = 6660.171394 C = 8198.940089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 N -0.554 5.554 4 C 0.197 3.803 5 C -0.516 4.516 6 H 0.072 0.928 7 C 0.081 3.919 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.511 3.489 14 O -0.555 6.555 15 C 0.494 3.506 16 O -0.437 6.437 17 N -0.660 5.660 18 C 0.161 3.839 19 C -0.111 4.111 20 C -0.071 4.071 21 C -0.155 4.155 22 C -0.121 4.121 23 C -0.120 4.120 24 C 0.095 3.905 25 O -0.364 6.364 26 C 0.095 3.905 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.057 0.943 34 H 0.264 0.736 35 H 0.417 0.583 36 H 0.154 0.846 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.990 6.791 12.463 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.284 5.284 4 C 0.077 3.923 5 C -0.554 4.554 6 H 0.090 0.910 7 C -0.121 4.121 8 N -0.535 5.535 9 Si 0.700 3.300 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.192 1.192 13 C 0.293 3.707 14 O -0.436 6.436 15 C 0.275 3.725 16 O -0.305 6.305 17 N -0.309 5.309 18 C 0.066 3.934 19 C -0.131 4.131 20 C -0.090 4.090 21 C -0.156 4.156 22 C -0.122 4.122 23 C -0.140 4.140 24 C 0.019 3.981 25 O -0.283 6.283 26 C 0.019 3.981 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.254 0.746 36 H 0.172 0.828 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.981 7.108 12.011 14.514 hybrid contribution -0.408 -0.015 -0.400 0.571 sum -4.389 7.093 11.611 14.297 Atomic orbital electron populations 1.22119 0.96165 1.01809 1.02197 1.21482 0.93906 0.82368 1.03488 1.47953 1.59357 1.13579 1.07509 1.20331 0.98838 0.93223 0.79891 1.21079 0.92865 1.34164 1.07339 0.90991 1.24712 0.94986 0.95326 0.97109 1.69885 1.16359 1.44383 1.22906 0.86900 0.82112 0.81466 0.79473 1.19780 1.21306 1.19235 1.19679 0.80099 0.86383 0.84489 1.90663 1.55653 1.66436 1.30834 1.20380 0.80413 0.87884 0.83781 1.90918 1.47189 1.63368 1.29008 1.43158 1.64872 1.12004 1.10873 1.17607 0.95152 0.84343 0.96309 1.21524 0.95490 0.96558 0.99490 1.20319 0.99315 0.92466 0.96894 1.20980 1.01049 0.96903 0.96631 1.20670 0.99517 0.94903 0.97094 1.20018 1.02289 0.91690 1.00050 1.21687 1.01670 0.81701 0.93042 1.89056 1.61024 1.28980 1.49220 1.21695 0.92655 0.90862 0.92931 0.92595 0.92403 0.91783 0.89646 0.90192 0.95117 0.92538 0.92615 0.74551 0.82816 0.85252 0.85388 0.88656 0.90616 0.88655 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.84 6.11 -4.04 -0.02 1.82 16 3 N -0.55 -11.19 2.47 -175.60 -0.43 -11.62 16 4 C 0.20 4.51 3.85 -5.19 -0.02 4.49 16 5 C -0.52 -13.89 8.38 -34.44 -0.29 -14.18 16 6 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 7 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 8 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 9 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 13 C 0.51 10.17 7.67 -11.63 -0.09 10.08 16 14 O -0.56 -10.93 16.05 5.49 0.09 -10.85 16 15 C 0.49 9.62 7.56 -11.63 -0.09 9.53 16 16 O -0.44 -9.80 9.65 5.48 0.05 -9.75 16 17 N -0.66 -10.43 5.31 -10.28 -0.05 -10.49 16 18 C 0.16 2.47 6.27 -83.72 -0.53 1.94 16 19 C -0.11 -1.84 8.69 -39.35 -0.34 -2.18 16 20 C -0.07 -1.02 10.03 -39.68 -0.40 -1.41 16 21 C -0.15 -2.00 6.32 -104.33 -0.66 -2.66 16 22 C -0.12 -1.50 6.32 -104.42 -0.66 -2.16 16 23 C -0.12 -1.52 9.97 -39.45 -0.39 -1.92 16 24 C 0.10 0.97 7.63 36.20 0.28 1.25 16 25 O -0.36 -4.37 11.72 -35.23 -0.41 -4.78 16 26 C 0.09 1.02 7.63 36.21 0.28 1.30 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 31 H 0.08 1.31 7.36 -51.93 -0.38 0.92 16 32 H 0.03 0.69 7.08 -51.93 -0.37 0.32 16 33 H 0.06 1.34 5.23 -51.93 -0.27 1.07 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.42 5.61 8.31 -40.82 -0.34 5.27 16 36 H 0.15 3.02 6.32 -52.48 -0.33 2.69 16 37 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -31.89 351.42 -7.52 -39.41 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.51 Total: 6.13 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -2.65 Total: 6.13 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.28 Total: -47.96 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.27 Total: -25.38 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.89 -7.52 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124073068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.204 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds